Prupe.4G185700_v2.0.a1

Protochlorophyllide reductase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
11016061 .. 11018972
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G185700.1

Sequence Viewer

Length: 1188 bp
ATGGCTCTTCAGGCTGCTTCTGTGGTTTCCTCTGCTTTCTCGGTTCCCAAAGAGGGAAAGTCCAGTGCATCTTTCAAGGAATCAAGCCTGTTTGGAGTGTCATTCTCAGACAATCTCAAGGCTGAATTCAGCTCTGTTGCATTAAGCTGCAAGAGAGAATTCAAGCCTGTCAGAGCCCAGACAGCGGCCACGGCATCCCCAGCAATCACCAGGGGTGCATCAGAGGGGAAGAAAACTCTCAGAAAGGGCAGTGTGGTGGTCACTGGTGCCTCCTCTGGACTGGGTCTAGCCACAGCCAAGGCTTTGGCTGAATCAGGGAAATGGCATGTTATAATGGCCTGCAGGGATTTCCTCAAGGCTGAAAGAGCTGCCAAGTCCGCTGGCATGCCCAAAGAAAACTACACAATTATGCATCTAGACCTTGCTTCCCTCGACAGTGTGCGCCAATTTGTCGATAACTTCAGGCGATCGGAGAGGCCACTTGATGTGCTTGTGTGCAATGCTGCTGTTTATCAGCCAACTGCTAAGGAACCTTCATTCACTGCTGAAGGCTTTGAACTCAGTGTTGGGACTAACCATCTCGGGCACTTCCTTCTTTCGCGGTTGCTGCTTGAAGATTTGAACAAATCTGACTACCCATCAAGGAGGCTCATCATTGTTGGCTCAATTACAGGGAACACAAACACCTTGGCCGGTAATGTGCCTCCAAAGGCCAACCTTGGGGACTTGAGGGGACTTGCAGGGGGCTTAAACGGTCTAAACAGTTCGTCCATGATCGATGGTGGAGACTTTGATGGTGCCAAGGCCTACAAGGACAGCAAAGTCTGCAACATGCTCACAATGCAGGAGTTCCACAGGCGCTACCATGAGGACACCGGAATAACCTTTACTTCCCTTTACCCGGGTTGTATTGCCACAACCGGTCTGTTTAGAGAGCACATTCCCTTGTTCAGACTTCTGTTCCCTCCATTCCAAAAGTACATCACCAAGGGCTACGTCTCAGAAGAAGAAGCCGGAAAGAGACTTGCTCAGGTTGTGAGCGACCCAAGCTTGACAAAGTCTGGAGTCTACTGGAGCTGGAACAAGGATTCGGCTTCCTTCGAGAACCAACTCTCCCAAGAAGCTAGTGATGCAGAGAAGGCTCGCAAGGTGTGGGAAGTCAGTGAGAAGCTTGTGGGTTTGGTCTAG

Protein Analysis

396

Amino Acids

42.76

Weight (kDa)

9.01

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 332
AasI GACNNNNNNGTC 1 cut(s) 821
AccB1I GGYRCC 2 cut(s) 266, 797
AccI GTMKAC 1 cut(s) 1068
AccII CGCG 1 cut(s) 601
AciI CCGC 3 cut(s) 185, 378, 601
AcoI YGGCCR 2 cut(s) 186, 690
AcsI RAATTY 2 cut(s) 125, 158
AcuI CTGAAG 2 cut(s) 445, 567
AfaI GTAC 1 cut(s) 980
AfiI CCNNNNNNNGG 4 cut(s) 53, 184, 720, 901
AgeI ACCGGT 1 cut(s) 920
AgsI TTSAA 5 cut(s) 76, 163, 557, 614, 622
AjnI CCWGG 1 cut(s) 209
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AloI GAACNNNNNNTCC 2 cut(s) 1097, 1129
AluBI AGCT 7 cut(s) 132, 147, 368, 1050, 1077, 1124, 1171
AluI AGCT 7 cut(s) 132, 147, 368, 1050, 1077, 1124, 1171
Alw21I GWGCWC 1 cut(s) 939
Alw26I GTCTC 3 cut(s) 780, 1003, 1015
Ama87I CYCGRG 2 cut(s) 581, 901
AoxI GGCC 6 cut(s) 186, 336, 476, 690, 711, 804
ApeKI GCWGC 5 cut(s) 14, 147, 368, 503, 607
ApoI RAATTY 2 cut(s) 125, 158
AsiGI ACCGGT 1 cut(s) 920
AspLEI GCGC 2 cut(s) 444, 861
AsuC2I CCSGG 2 cut(s) 902, 903
AsuHPI GGTGA 2 cut(s) 199, 976
AvaI CYCGRG 2 cut(s) 581, 901
BaeGI GKGCMC 1 cut(s) 588
BanI GGYRCC 2 cut(s) 266, 797
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 939
BbvI GCAGC 4 cut(s) 134, 355, 490, 594
BccI CCATC 4 cut(s) 585, 646, 773, 788
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 1 cut(s) 211
BcnI CCSGG 2 cut(s) 902, 903
BcoDI GTCTC 3 cut(s) 780, 1003, 1015
BfaI CTAG 4 cut(s) 287, 416, 1125, 1186
BfmI CTRYAG 1 cut(s) 340
BfoI RGCGCY 1 cut(s) 862
BisI GCNGC 6 cut(s) 15, 148, 186, 369, 504, 608
BlsI GCNGC 6 cut(s) 16, 149, 187, 370, 505, 609
Bme1390I CCNGG 3 cut(s) 211, 902, 903
BmeT110I CYCGRG 2 cut(s) 581, 901
BmiI GGNNCC 4 cut(s) 45, 268, 531, 799
BmrFI CCNGG 3 cut(s) 211, 902, 903
BmrI ACTGGG 1 cut(s) 290
BmsI GCATC 5 cut(s) 77, 203, 227, 421, 1120
BmuI ACTGGG 1 cut(s) 290
BplI GAGNNNNNCTC 2 cut(s) 1012, 1044
BpmI CTGGAG 2 cut(s) 1083, 1093
Bpu10I CCTNAGC 2 cut(s) 525, 1029
BpuEI CTTGAG 3 cut(s) 101, 338, 748
BpuMI CCSGG 2 cut(s) 902, 903
Bsa29I ATCGAT 1 cut(s) 777
BsaJI CCNNGG 8 cut(s) 189, 210, 297, 687, 718, 801, 901, 987
BsaWI WCCGGW 2 cut(s) 875, 920
BsaXI ACNNNNNCTCC 2 cut(s) 1097, 1127
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 184, 720, 901
Bse118I RCCGGY 2 cut(s) 692, 920
Bse1I ACTGG 4 cut(s) 63, 268, 285, 1076
Bse3DI GCAATG 1 cut(s) 505
BseBI CCWGG 1 cut(s) 211
BseCI ATCGAT 1 cut(s) 777
BseDI CCNNGG 8 cut(s) 189, 210, 297, 687, 718, 801, 901, 987
BseGI GGATG 1 cut(s) 194
BseLI CCNNNNNNNGG 4 cut(s) 53, 184, 720, 901
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 5 cut(s) 120, 253, 574, 1014, 1043
BseNI ACTGG 4 cut(s) 63, 268, 285, 1076
BseRI GAGGAG 1 cut(s) 262
BseSI GKGCMC 1 cut(s) 588
BseXI GCAGC 4 cut(s) 134, 355, 490, 594
BseYI CCCAGC 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 601
Bsh1285I CGRYCG 1 cut(s) 470
BshFI GGCC 6 cut(s) 188, 338, 478, 692, 713, 806
BshNI GGYRCC 2 cut(s) 266, 797
BshTI ACCGGT 1 cut(s) 920
BshVI ATCGAT 1 cut(s) 777
BsiEI CGRYCG 1 cut(s) 470
BsiHKAI GWGCWC 1 cut(s) 939
BsiHKCI CYCGRG 2 cut(s) 581, 901
BsiSI CCGG 5 cut(s) 693, 876, 902, 921, 1014
BslFI GGGAC 3 cut(s) 583, 737, 747
BslI CCNNNNNNNGG 4 cut(s) 53, 184, 720, 901
BsmAI GTCTC 3 cut(s) 780, 1003, 1015
BsmBI CGTCTC 1 cut(s) 1003
BsmFI GGGAC 3 cut(s) 583, 737, 747
BsnI GGCC 6 cut(s) 188, 338, 478, 692, 713, 806
BsoBI CYCGRG 2 cut(s) 581, 901
Bsp1286I GDGCHC 3 cut(s) 178, 588, 939
Bsp143I GATC 2 cut(s) 467, 774
BspACI CCGC 3 cut(s) 185, 378, 601
BspANI GGCC 6 cut(s) 188, 338, 478, 692, 713, 806
BspCNI CTCAG 5 cut(s) 119, 252, 573, 1013, 1042
BspDI ATCGAT 1 cut(s) 777
BspFNI CGCG 1 cut(s) 601
BspLI GGNNCC 4 cut(s) 45, 268, 531, 799
BspMAI CTGCAG 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 2 cut(s) 266, 797
BsrDI GCAATG 1 cut(s) 505
BsrFI RCCGGY 2 cut(s) 692, 920
BsrI ACTGG 4 cut(s) 63, 268, 285, 1076
BssAI RCCGGY 2 cut(s) 692, 920
BssECI CCNNGG 8 cut(s) 189, 210, 297, 687, 718, 801, 901, 987
BssMI GATC 2 cut(s) 467, 774
BssT1I CCWWGG 5 cut(s) 297, 687, 718, 801, 987
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 3 cut(s) 437, 755, 764
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 825
BstC8I GCNNGC 4 cut(s) 340, 382, 386, 1144
BstDEI CTNAG 6 cut(s) 106, 239, 525, 560, 1000, 1029
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 194
BstFNI CGCG 1 cut(s) 601
BstH2I RGCGCY 1 cut(s) 862
BstHHI GCGC 2 cut(s) 444, 861
BstKTI GATC 2 cut(s) 470, 777
BstMAI GTCTC 3 cut(s) 780, 1003, 1015
BstMBI GATC 2 cut(s) 467, 774
BstMCI CGRYCG 1 cut(s) 470
BstNI CCWGG 1 cut(s) 211
BstNSI RCATGY 3 cut(s) 329, 388, 835
BstSCI CCNGG 3 cut(s) 209, 900, 901
BstSFI CTRYAG 1 cut(s) 340
BstSLI GKGCMC 1 cut(s) 588
BstUI CGCG 1 cut(s) 601
BstV1I GCAGC 4 cut(s) 134, 355, 490, 594
BstXI CCANNNNNNTGG 1 cut(s) 304
Bsu15I ATCGAT 1 cut(s) 777
BsuRI GGCC 6 cut(s) 188, 338, 478, 692, 713, 806
BsuTUI ATCGAT 1 cut(s) 777
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 194
BtsI GCAGTG 2 cut(s) 256, 540
BtsIMutI CAGTG 7 cut(s) 70, 256, 261, 442, 540, 568, 1168
Cac8I GCNNGC 4 cut(s) 340, 382, 386, 1144
CfoI GCGC 2 cut(s) 444, 861
Cfr10I RCCGGY 2 cut(s) 692, 920
Cfr9I CCCGGG 1 cut(s) 901
ClaI ATCGAT 1 cut(s) 777
Csp6I GTAC 1 cut(s) 979
CspAI ACCGGT 1 cut(s) 920
CviAII CATG 5 cut(s) 326, 385, 772, 832, 866
CviQI GTAC 1 cut(s) 979
DdeI CTNAG 6 cut(s) 106, 239, 525, 560, 1000, 1029
DpnI GATC 2 cut(s) 469, 776
DpnII GATC 2 cut(s) 467, 774
DrdI GACNNNNNNGTC 1 cut(s) 821
DseDI GACNNNNNNGTC 1 cut(s) 821
EaeI YGGCCR 2 cut(s) 186, 690
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 5 cut(s) 297, 687, 718, 801, 987
Eco147I AGGCCT 1 cut(s) 806
Eco24I GRGCYC 1 cut(s) 178
Eco57I CTGAAG 2 cut(s) 445, 567
Eco88I CYCGRG 2 cut(s) 581, 901
EcoRI GAATTC 2 cut(s) 125, 158
EcoRII CCWGG 1 cut(s) 209
EcoT14I CCWWGG 5 cut(s) 297, 687, 718, 801, 987
EcoT22I ATGCAT 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 5 cut(s) 297, 687, 718, 801, 987
Esp3I CGTCTC 1 cut(s) 1003
FaeI CATG 5 cut(s) 329, 388, 775, 835, 869
FaiI YATR 7 cut(s) 327, 332, 386, 410, 773, 833, 867
FaqI GGGAC 3 cut(s) 583, 737, 747
FatI CATG 5 cut(s) 325, 384, 771, 831, 865
FblI GTMKAC 1 cut(s) 1068
Fnu4HI GCNGC 6 cut(s) 15, 148, 186, 369, 504, 608
FokI GGATG 1 cut(s) 181
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 6 cut(s) 15, 148, 186, 369, 504, 608
FspBI CTAG 4 cut(s) 287, 416, 1125, 1186
GlaI GCGC 2 cut(s) 443, 860
GluI GCNGC 6 cut(s) 15, 148, 186, 369, 504, 608
GsaI CCCAGC 1 cut(s) 203
GsuI CTGGAG 2 cut(s) 1083, 1093
HaeII RGCGCY 1 cut(s) 862
HaeIII GGCC 6 cut(s) 188, 338, 478, 692, 713, 806
HapII CCGG 5 cut(s) 693, 876, 902, 921, 1014
HhaI GCGC 2 cut(s) 444, 861
Hin1II CATG 5 cut(s) 329, 388, 775, 835, 869
Hin6I GCGC 2 cut(s) 442, 859
HinP1I GCGC 2 cut(s) 442, 859
HindIII AAGCTT 2 cut(s) 1048, 1169
HinfI GANTC 4 cut(s) 80, 311, 1065, 1088
HpaII CCGG 5 cut(s) 693, 876, 902, 921, 1014
HphI GGTGA 2 cut(s) 199, 976
Hpy166II GTNNAC 1 cut(s) 1069
Hpy188I TCNGA 8 cut(s) 109, 173, 223, 242, 472, 631, 953, 1003
Hpy188III TCNNGA 4 cut(s) 276, 416, 1062, 1102
Hpy8I GTNNAC 1 cut(s) 1069
HpyAV CCTTC 5 cut(s) 542, 543, 602, 1108, 1132
HpyCH4III ACNGT 3 cut(s) 437, 755, 764
HpyCH4IV ACGT 1 cut(s) 996
HpyF3I CTNAG 6 cut(s) 106, 239, 525, 560, 1000, 1029
HpySE526I ACGT 1 cut(s) 996
Hsp92II CATG 5 cut(s) 329, 388, 775, 835, 869
HspAI GCGC 2 cut(s) 442, 859
Kzo9I GATC 2 cut(s) 467, 774
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 1074
Lsp1109I GCAGC 4 cut(s) 134, 355, 490, 594
LweI GCATC 5 cut(s) 77, 203, 227, 421, 1120
MaeI CTAG 4 cut(s) 287, 416, 1125, 1186
MaeII ACGT 1 cut(s) 996
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 469, 776
MboI GATC 2 cut(s) 467, 774
MboII GAAGA 4 cut(s) 241, 626, 1016, 1019
MhlI GDGCHC 3 cut(s) 178, 588, 939
MluCI AATT 5 cut(s) 125, 158, 405, 446, 666
MlyI GAGTC 1 cut(s) 1074
Mph1103I ATGCAT 1 cut(s) 414
MseI TTAA 2 cut(s) 143, 749
MslI CAYNNNNRTG 1 cut(s) 407
MspA1I CMGCKG 2 cut(s) 185, 380
MspI CCGG 5 cut(s) 693, 876, 902, 921, 1014
MspR9I CCNGG 3 cut(s) 211, 902, 903
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 1 cut(s) 601
NciI CCSGG 2 cut(s) 902, 903
NdeII GATC 2 cut(s) 467, 774
NlaIII CATG 5 cut(s) 329, 388, 775, 835, 869
NlaIV GGNNCC 4 cut(s) 45, 268, 531, 799
NmuCI GTSAC 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 414
NspI RCATGY 3 cut(s) 329, 388, 835
PaeI GCATGC 1 cut(s) 388
PceI AGGCCT 1 cut(s) 806
PciSI GCTCTTC 1 cut(s) 12
PfeI GAWTC 3 cut(s) 80, 311, 1088
PflFI GACNNNGTC 2 cut(s) 282, 1057
PinAI ACCGGT 1 cut(s) 920
PkrI GCNGC 6 cut(s) 16, 149, 187, 370, 505, 609
Ple19I CGATCG 1 cut(s) 470
PleI GAGTC 1 cut(s) 1073
PpsI GAGTC 1 cut(s) 1073
PsiI TTATAA 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 209
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 4 cut(s) 45, 268, 531, 799
PstI CTGCAG 1 cut(s) 344
PsyI GACNNNGTC 2 cut(s) 282, 1057
PvuI CGATCG 1 cut(s) 470
RsaI GTAC 1 cut(s) 980
RsaNI GTAC 1 cut(s) 979
RseI CAYNNNNRTG 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 143, 749
SatI GCNGC 6 cut(s) 15, 148, 186, 369, 504, 608
Sau3AI GATC 2 cut(s) 467, 774
SbfI CCTGCAGG 1 cut(s) 344
SchI GAGTC 1 cut(s) 1074
ScrFI CCNGG 3 cut(s) 211, 902, 903
SdaI CCTGCAGG 1 cut(s) 344
SduI GDGCHC 3 cut(s) 178, 588, 939
SfaNI GCATC 5 cut(s) 77, 203, 227, 421, 1120
SfcI CTRYAG 1 cut(s) 340
SmaI CCCGGG 1 cut(s) 903
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 3 cut(s) 116, 353, 727
SmoI CTYRAG 3 cut(s) 116, 353, 727
SphI GCATGC 1 cut(s) 388
Sse8387I CCTGCAGG 1 cut(s) 344
Sse9I AATT 5 cut(s) 125, 158, 405, 446, 666
SseBI AGGCCT 1 cut(s) 806
SsiI CCGC 3 cut(s) 185, 378, 601
SspMI CTAG 4 cut(s) 287, 416, 1125, 1186
StuI AGGCCT 1 cut(s) 806
StyD4I CCNGG 3 cut(s) 209, 900, 901
StyI CCWWGG 5 cut(s) 297, 687, 718, 801, 987
TaaI ACNGT 3 cut(s) 437, 755, 764
TaiI ACGT 1 cut(s) 999
TaqI TCGA 4 cut(s) 432, 453, 777, 1101
TasI AATT 5 cut(s) 125, 158, 405, 446, 666
TatI WGTACW 1 cut(s) 978
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 3 cut(s) 80, 311, 1088
Tru1I TTAA 2 cut(s) 143, 749
Tru9I TTAA 2 cut(s) 143, 749
TscAI CASTG 7 cut(s) 70, 256, 268, 442, 547, 568, 1168
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 5 cut(s) 14, 147, 368, 503, 607
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 525
TspMI CCCGGG 1 cut(s) 901
TspRI CASTG 7 cut(s) 70, 256, 268, 442, 547, 568, 1168
Tth111I GACNNNGTC 2 cut(s) 282, 1057
XapI RAATTY 2 cut(s) 125, 158
XbaI TCTAGA 1 cut(s) 415
XceI RCATGY 3 cut(s) 329, 388, 835
XmaI CCCGGG 1 cut(s) 901
XmiI GTMKAC 1 cut(s) 1068
XspI CTAG 4 cut(s) 287, 416, 1125, 1186
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.