Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009401

Physical Location & Seq

Genomic Coordinates Reverse (-)

21990864 .. 21992814

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGCCCTTCAAGCTGCTTCTTTGGTCTCCTCTGCTTTCTCTGTCCGCAAAGATGGAAAATTAAATGCTTCAGCATCATCATCATTCAAAGAGTCTAGTCTGTTCGGTGTTTCACTTTCGGAGCAAAGCAAAGCTGACTTTGTCTCTTCCTCATTGAGATGCAAGAGGGAACAGAGCTTGAGGAATAATAAAGCGATTATTCGAGCTCAAGCAATCGCGACTTCAACTCCATCAGTCACAAAATCTTCCTTAGACCGCAAGAAAACACTTAGAAAAGGAAACGTGGTTGTCACGGGAGCTTCTTCAGGGCTAGGTTTAGCAACGGCAAAGGCATTAGCCGAGACAGGTAAATGGCACGTGATAATGGCGTGCAGAGACTTCCTCAAGGCTGAGAGAGCCGCTCAATCTGCAGGGATGCCTAAGGACAGCTACACTGTGATGCATTTGGACTTGGCGTCTTTGGACAGCGTGAGGCAGTTTGTTGATAACTTCAGGCGAGCTGAGATGCCTCTCGATGTGTTGGTCTGCAATGCCGCAGTCTATCAGCCAACGGCTAATCAACCTACTTTCACTGCTGAAGGGTTTGAGCTTAGCGTTGGGATAAACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTGATTGATGACTTGAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATAACCGGAAACACTAATACATTGGCTGGTAATGTACCTCCAAAGGCTAATCTTGGTGATTTGAGGGGACTAGCAGGCGGGTTGAACGGGCTAAACAGCTCGGCGATGATAGATGGAGGAGATTTTGTTGGCGCAAAGGCGTATAAAGATAGCAAAGTCTGCAACATGTTGACAATGCAGGAGTTTCATAGGCGTTTCCATGAAGACACCGGCATAACTTTTGCTTCCCTTTACCCCGGTTGTATTGCAACGACTGGTTTGTTCAGAGAGCATATTCCTCTTTTCCGTACCCTCTTCCCTCCTTTCCAGAAGTACATCACAAAAGGTTACGTCTCCGAGTCAGAGGCTGGGAAAAGACTTGCTCAGGTGGTGGCTGATCCAAGCTTGACGAAGTCGGGAGTGTATTGGAGCTGGAACAAGACCTCGGCTTCATTTGAGAATCAGCTGTCTCAAGAAGCTAGCGATGTCGAGAAGGCTCGTAGAGTTTGGGAAGTCAGCGAGAAGCTCGTAGGCTTGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009527 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009639 GO:0009640 GO:0009642 GO:0009646 GO:0009647 GO:0009707 GO:0009719 GO:0009723 GO:0009725 GO:0009791 GO:0009941 GO:0010033 GO:0016020 GO:0016491 GO:0016627 GO:0016628 GO:0016630 GO:0016651 GO:0019867 GO:0019904 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0042170 GO:0042221 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050896 GO:0055035 GO:0055114 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

adh_short

Protein Analysis

405

Amino Acids

43.86

Weight (kDa)

9.42

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	8 - 117	3e-09	short chain dehydrogenase
adh_short_C2	PF13561	13 - 114	5.8e-06	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03630 AT1G03630 AT4G27440 AT4G27440 AT5G54190 AT5G54190
fragaria_vesca	FvH4_3g20600
malus_domestica	MD11G1241700.v1.1
prunus_persica	Prupe.4G185700_v2.0.a1 Prupe.4G185700_v2.0.a1 Prupe.4G185700_v2.0.a1
pyrus_communis	pycom11g21330
rosa_chinensis	RchiOBHm_Chr5g0034621
rosa_laevigata	RLG00000033559
rosa_multiflora	Rmu_sc0002460.1_g000093
rosa_roxburghii	Rroxscaffold_1G00045700
rosa_rugosa	Rorug05G0147200
rosa_samantha	Rh5AG239200 Rh5BG239900 Rh5CG270300 Rh5DG248100
rosa_wichuraiana	Rw5G021920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	401
AccII	CGCG	1 cut(s)	218
AciI	CCGC	5 cut(s)	46, 256, 399, 534, 774
AclWI	GGATC	3 cut(s)	687, 700, 1067
AcuI	CTGAAG	4 cut(s)	54, 288, 475, 597
AcvI	CACGTG	1 cut(s)	358
AcyI	GRCGYC	1 cut(s)	455
AfaI	GTAC	3 cut(s)	732, 985, 1010
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	6 cut(s)	11, 88, 225, 630, 652, 781
AhdI	GACNNNNNGTC	1 cut(s)	454
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	7 cut(s)	31, 148, 335, 369, 683, 1033, 1149
AlwI	GGATC	3 cut(s)	687, 700, 1067
AlwNI	CAGNNNCTG	1 cut(s)	1043
AoxI	GGCC	3 cut(s)	3, 613, 1212
ApeKI	GCWGC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	830
AspS9I	GGNCC	2 cut(s)	4, 613
AsuC2I	CCSGG	1 cut(s)	933
AsuHPI	GGTGA	1 cut(s)	764
AsuNHI	GCTAGC	1 cut(s)	1154
AxyI	CCTNAGG	1 cut(s)	420
BamHI	GGATCC	1 cut(s)	692
BanII	GRGCYC	1 cut(s)	208
BbrPI	CACGTG	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	906
Bbv12I	GWGCWC	1 cut(s)	208
BccI	CCATC	4 cut(s)	47, 238, 676, 803
BceAI	ACGGC	2 cut(s)	339, 567
BcnI	CCSGG	1 cut(s)	933
BcoDI	GTCTC	7 cut(s)	31, 148, 335, 369, 683, 1033, 1149
BfaI	CTAG	4 cut(s)	96, 311, 767, 1155
BfmI	CTRYAG	1 cut(s)	408
BisI	GCNGC	3 cut(s)	15, 399, 534
BlpI	GCTNAGC	1 cut(s)	590
BlsI	GCNGC	3 cut(s)	16, 400, 535
Bme1390I	CCNGG	1 cut(s)	933
BmeRI	GACNNNNNGTC	1 cut(s)	454
BmgT120I	GGNCC	2 cut(s)	4, 613
BmiI	GGNNCC	1 cut(s)	694
BmrFI	CCNGG	1 cut(s)	933
BmsI	GCATC	5 cut(s)	83, 149, 405, 429, 495
BmtI	GCTAGC	1 cut(s)	1158
BpiI	GAAGAC	1 cut(s)	906
BplI	GAGNNNNNCTC	4 cut(s)	366, 398, 385, 417
Bpu10I	CCTNAGC	1 cut(s)	1059
Bpu1102I	GCTNAGC	1 cut(s)	590
BpuEI	CTTGAG	4 cut(s)	192, 199, 368, 1131
BpuMI	CCSGG	1 cut(s)	933
BsaAI	YACGTR	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	931, 1119
BsaWI	WCCGGW	1 cut(s)	701
BsaXI	ACNNNNNCTCC	4 cut(s)	211, 241, 807, 837
Bse118I	RCCGGY	1 cut(s)	905
Bse1I	ACTGG	1 cut(s)	955
Bse21I	CCTNAGG	1 cut(s)	420
Bse3DI	GCAATG	1 cut(s)	535
BseDI	CCNNGG	2 cut(s)	931, 1119
BseGI	GGATG	1 cut(s)	420
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	3 cut(s)	381, 492, 1073
BseNI	ACTGG	1 cut(s)	955
BseRI	GAGGAG	2 cut(s)	19, 828
BseYI	CCCAGC	1 cut(s)	1043
BsgI	GTGCAG	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	3 cut(s)	5, 615, 1214
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	3 cut(s)	702, 906, 933
BslFI	GGGAC	1 cut(s)	777
BsmAI	GTCTC	7 cut(s)	31, 148, 335, 369, 683, 1033, 1149
BsmBI	CGTCTC	2 cut(s)	683, 1033
BsmFI	GGGAC	1 cut(s)	777
BsnI	GGCC	3 cut(s)	5, 615, 1214
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	692, 1072
Bsp1720I	GCTNAGC	1 cut(s)	590
Bsp68I	TCGCGA	1 cut(s)	218
BspACI	CCGC	5 cut(s)	46, 256, 399, 534, 774
BspANI	GGCC	3 cut(s)	5, 615, 1214
BspCNI	CTCAG	3 cut(s)	382, 493, 1072
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	1 cut(s)	694
BspMAI	CTGCAG	1 cut(s)	412
BspOI	GCTAGC	1 cut(s)	1158
BspPI	GGATC	3 cut(s)	687, 700, 1067
BspTNI	GGTCTC	1 cut(s)	31
BsrBI	CCGCTC	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	905
BsrI	ACTGG	1 cut(s)	955
BssAI	RCCGGY	1 cut(s)	905
BssECI	CCNNGG	2 cut(s)	931, 1119
BssMI	GATC	2 cut(s)	692, 1072
BssNI	GRCGYC	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	2 cut(s)	151, 995
BstACI	GRCGYC	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	855
BstBAI	YACGTR	1 cut(s)	358
BstC8I	GCNNGC	4 cut(s)	370, 498, 772, 1156
BstDEI	CTNAG	7 cut(s)	250, 269, 390, 420, 501, 590, 1059
BstF5I	GGATG	1 cut(s)	420
BstFNI	CGCG	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	830
BstKTI	GATC	2 cut(s)	695, 1075
BstMAI	GTCTC	7 cut(s)	31, 148, 335, 369, 683, 1033, 1149
BstMBI	GATC	2 cut(s)	692, 1072
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 395, 407, 855
BstNSI	RCATGY	1 cut(s)	865
BstSCI	CCNGG	1 cut(s)	931
BstSFI	CTRYAG	1 cut(s)	408
BstUI	CGCG	1 cut(s)	218
BstV2I	GAAGAC	1 cut(s)	906
BstX2I	RGATCY	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	692
Bsu36I	CCTNAGG	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	5, 615, 1214
BtgZI	GCGATG	2 cut(s)	815, 1173
BtsCI	GGATG	1 cut(s)	420
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	2 cut(s)	432, 570
BtuMI	TCGCGA	1 cut(s)	218
Cac8I	GCNNGC	4 cut(s)	370, 498, 772, 1156
CaiI	CAGNNNCTG	1 cut(s)	1043
CfoI	GCGC	1 cut(s)	830
Cfr10I	RCCGGY	1 cut(s)	905
Cfr13I	GGNCC	2 cut(s)	4, 613
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	731, 984, 1009
CviAII	CATG	2 cut(s)	862, 896
CviQI	GTAC	3 cut(s)	731, 984, 1009
DdeI	CTNAG	7 cut(s)	250, 269, 390, 420, 501, 590, 1059
DpnI	GATC	2 cut(s)	694, 1074
DpnII	GATC	2 cut(s)	692, 1072
DriI	GACNNNNNGTC	1 cut(s)	454
Eam1104I	CTCTTC	2 cut(s)	151, 995
Eam1105I	GACNNNNNGTC	1 cut(s)	454
EarI	CTCTTC	2 cut(s)	151, 995
Ecl136II	GAGCTC	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	208
Eco31I	GGTCTC	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	4 cut(s)	54, 288, 475, 597
Eco72I	CACGTG	1 cut(s)	358
Eco81I	CCTNAGG	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	206
EcoT22I	ATGCAT	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	208
Esp3I	CGTCTC	2 cut(s)	683, 1033
FaeI	CATG	2 cut(s)	865, 899
FaiI	YATR	7 cut(s)	698, 840, 863, 885, 897, 911, 969
FaqI	GGGAC	1 cut(s)	777
FatI	CATG	2 cut(s)	861, 895
FauI	CCCGC	1 cut(s)	767
Fnu4HI	GCNGC	3 cut(s)	15, 399, 534
FokI	GGATG	1 cut(s)	427
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	3 cut(s)	15, 399, 534
FspBI	CTAG	4 cut(s)	96, 311, 767, 1155
GlaI	GCGC	1 cut(s)	829
GluI	GCNGC	3 cut(s)	15, 399, 534
GsaI	CCCAGC	1 cut(s)	1047
HaeIII	GGCC	3 cut(s)	5, 615, 1214
HapII	CCGG	3 cut(s)	702, 906, 933
HgaI	GACGC	1 cut(s)	444
HhaI	GCGC	1 cut(s)	830
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	2 cut(s)	865, 899
Hin6I	GCGC	1 cut(s)	828
HinP1I	GCGC	1 cut(s)	828
HincII	GTYRAC	1 cut(s)	867
HindII	GTYRAC	1 cut(s)	867
HindIII	AAGCTT	1 cut(s)	1078
HinfI	GANTC	3 cut(s)	92, 1034, 1135
HpaII	CCGG	3 cut(s)	702, 906, 933
HphI	GGTGA	1 cut(s)	764
Hpy166II	GTNNAC	1 cut(s)	867
Hpy188I	TCNGA	5 cut(s)	121, 661, 962, 1033, 1039
Hpy188III	TCNNGA	7 cut(s)	217, 512, 630, 1003, 1092, 1148, 1165
Hpy8I	GTNNAC	1 cut(s)	867
HpyAV	CCTTC	3 cut(s)	17, 572, 1162
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	4 cut(s)	282, 357, 676, 1026
HpyCH4V	TGCA	8 cut(s)	162, 372, 410, 442, 528, 858, 874, 944
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 395, 407, 855
HpyF3I	CTNAG	7 cut(s)	250, 269, 390, 420, 501, 590, 1059
HpySE526I	ACGT	4 cut(s)	282, 357, 676, 1026
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	2 cut(s)	865, 899
HspAI	GCGC	1 cut(s)	828
Kzo9I	GATC	2 cut(s)	692, 1072
LmnI	GCTCC	3 cut(s)	121, 296, 1104
LweI	GCATC	5 cut(s)	83, 149, 405, 429, 495
MaeI	CTAG	4 cut(s)	96, 311, 767, 1155
MaeII	ACGT	4 cut(s)	282, 357, 676, 1026
MaeIII	GTNAC	3 cut(s)	235, 289, 1022
MalI	GATC	2 cut(s)	694, 1074
MbiI	CCGCTC	1 cut(s)	401
MboI	GATC	2 cut(s)	692, 1072
MboII	GAAGA	7 cut(s)	138, 237, 294, 614, 664, 911, 982
MflI	RGATCY	1 cut(s)	692
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	101, 1043
MmeI	TCCRAC	1 cut(s)	670
Mph1103I	ATGCAT	1 cut(s)	444
MseI	TTAA	1 cut(s)	62
MslI	CAYNNNNRTG	2 cut(s)	157, 437
MspA1I	CMGCKG	1 cut(s)	1141
MspI	CCGG	3 cut(s)	702, 906, 933
MspR9I	CCNGG	1 cut(s)	933
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	4 cut(s)	11, 395, 407, 855
NciI	CCSGG	1 cut(s)	933
NdeII	GATC	2 cut(s)	692, 1072
NheI	GCTAGC	1 cut(s)	1154
NlaIII	CATG	2 cut(s)	865, 899
NlaIV	GGNNCC	1 cut(s)	694
NmeAIII	GCCGAG	3 cut(s)	364, 776, 1100
NmuCI	GTSAC	2 cut(s)	235, 289
NruI	TCGCGA	1 cut(s)	218
NsiI	ATGCAT	1 cut(s)	444
NspI	RCATGY	1 cut(s)	865
PciI	ACATGT	1 cut(s)	861
PfeI	GAWTC	1 cut(s)	1135
PflFI	GACNNNGTC	2 cut(s)	140, 1087
PkrI	GCNGC	3 cut(s)	16, 400, 535
PleI	GAGTC	2 cut(s)	100, 1042
PmaCI	CACGTG	1 cut(s)	358
PmlI	CACGTG	1 cut(s)	358
PpsI	GAGTC	2 cut(s)	100, 1042
Ppu21I	YACGTR	1 cut(s)	358
PscI	ACATGT	1 cut(s)	861
Psp124BI	GAGCTC	1 cut(s)	208
PspCI	CACGTG	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	1043
PspN4I	GGNNCC	1 cut(s)	694
PspPI	GGNCC	2 cut(s)	4, 613
PstI	CTGCAG	1 cut(s)	412
PstNI	CAGNNNCTG	1 cut(s)	1043
PsuI	RGATCY	1 cut(s)	692
PsyI	GACNNNGTC	2 cut(s)	140, 1087
PvuII	CAGCTG	1 cut(s)	1141
RruI	TCGCGA	1 cut(s)	218
RsaI	GTAC	3 cut(s)	732, 985, 1010
RsaNI	GTAC	3 cut(s)	731, 984, 1009
RseI	CAYNNNNRTG	2 cut(s)	157, 437
SacI	GAGCTC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	62
SatI	GCNGC	3 cut(s)	15, 399, 534
Sau3AI	GATC	2 cut(s)	692, 1072
Sau96I	GGNCC	2 cut(s)	4, 613
SchI	GAGTC	2 cut(s)	101, 1043
ScrFI	CCNGG	1 cut(s)	933
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	5 cut(s)	83, 149, 405, 429, 495
SfcI	CTRYAG	1 cut(s)	408
SmiMI	CAYNNNNRTG	2 cut(s)	157, 437
SmlI	CTYRAG	4 cut(s)	178, 207, 383, 1146
SmoI	CTYRAG	4 cut(s)	178, 207, 383, 1146
Sse9I	AATT	1 cut(s)	59
SsiI	CCGC	5 cut(s)	46, 256, 399, 534, 774
SspMI	CTAG	4 cut(s)	96, 311, 767, 1155
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	931
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	4 cut(s)	285, 360, 679, 1029
TaqI	TCGA	3 cut(s)	202, 513, 1164
TasI	AATT	1 cut(s)	59
TatI	WGTACW	1 cut(s)	1008
TauI	GCSGC	2 cut(s)	401, 536
TfiI	GAWTC	1 cut(s)	1135
Tru1I	TTAA	1 cut(s)	62
Tru9I	TTAA	1 cut(s)	62
TscAI	CASTG	2 cut(s)	439, 577
TseFI	GTSAC	2 cut(s)	235, 289
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	2 cut(s)	235, 289
TspDTI	ATGAA	3 cut(s)	872, 912, 1116
TspGWI	ACGGA	1 cut(s)	971
TspRI	CASTG	2 cut(s)	439, 577
Tth111I	GACNNNGTC	2 cut(s)	140, 1087
XceI	RCATGY	1 cut(s)	865
XspI	CTAG	4 cut(s)	96, 311, 767, 1155
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.