AT1G03650

FR47-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013000
Physical Location & Seq
Reverse (-)
910023 .. 911292
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03650.1

Sequence Viewer

Length: 477 bp
ATGGACAAAGGAGTTGTGGTAGAGCTGATTAGAGGGTCGACCAGTTGGGCCAAAGTTGTGGAAGATATCGTGAAGCTGGAGAAGAAAACGTTCCCTAAACACGAATCTCTCGCTCAAACTTTCGATGCAGAGCTGCGTAAGAAAAACGCCGGTTTGCTATACGTGGATGCTGAAGGAGACACAGTAGGCTATGCCATGTATTCTTGGCCATCTTCGCTTTCCGCTTCAATCACCAAGCTCGCAGTGAAGGAGAATTGCAGAAGACAAGGTCATGGAGAAGCATTGTTGAGAGCGGCTATCGACAAGTGCAGAAGCAGAAAGGTGCAACGGGTTTCACTTCATGTCGACCCCACGAGAACTTCTGCGGTGAATCTGTACAAAAAGCTTGGGTTCCAAGTAGACTGTCTAGTGAAAAGCTACTACTCGGCTGATAGAGATGCTTACAGAATGTACCTAGATTTTGATGACTCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

158

Amino Acids

17.84

Weight (kDa)

9.06

Isoelectric Point (pI)

22.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_10 PF13673 22 - 133 3.4e-13 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 23 - 131 8.4e-19 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 53 - 132 1.6e-12 Acetyltransferase (GNAT) domain
FR47 PF08445 75 - 134 4.9e-08 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03650
fragaria_vesca FvH4_2g15130 FvH4_2g15130
malus_domestica MD09G1249800.v1.1
prunus_persica Prupe.3G155400_v2.0.a1
pyrus_communis pycom09g16660
rosa_chinensis RchiOBHm_Chr6g0277731
rosa_laevigata RLG00000013279
rosa_multiflora Rmu_sc0007109.1_g000020
rosa_roxburghii Rroxscaffold_7G00190990
rosa_rugosa Rorug06G0110500 Rorug06G0110600 Rorug06G0110700
rosa_samantha Rh6AG221200 Rh6BG225100 Rh6CG227600 Rh6DG218300
rosa_wichuraiana Rw6G019380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 293
AccI GTMKAC 3 cut(s) 38, 345, 399
AciI CCGC 3 cut(s) 222, 293, 365
AclI AACGTT 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 192
AfaI GTAC 2 cut(s) 377, 452
AgsI TTSAA 1 cut(s) 228
AluBI AGCT 6 cut(s) 25, 76, 133, 238, 385, 417
AluI AGCT 6 cut(s) 25, 76, 133, 238, 385, 417
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 2 cut(s) 48, 206
ApeKI GCWGC 1 cut(s) 133
Asp700I GAANNNNTTC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 223, 379
BalI TGGCCA 1 cut(s) 208
BauI CACGAG 1 cut(s) 352
BbsI GAAGAC 1 cut(s) 268
BbvI GCAGC 1 cut(s) 120
BccI CCATC 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 2 cut(s) 407, 455
BisI GCNGC 2 cut(s) 134, 294
BlsI GCNGC 2 cut(s) 135, 295
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 392
BmsI GCATC 3 cut(s) 115, 157, 427
BpiI GAAGAC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 98
BsaAI YACGTR 1 cut(s) 163
BsaXI ACNNNNNCTCC 3 cut(s) 33, 168, 198
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 120
BsgI GTGCAG 1 cut(s) 328
BshFI GGCC 2 cut(s) 50, 208
BsiSI CCGG 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 171
BsnI GGCC 2 cut(s) 50, 208
Bsp1407I TGTACA 1 cut(s) 375
BspACI CCGC 3 cut(s) 222, 293, 365
BspANI GGCC 2 cut(s) 50, 208
BspLI GGNNCC 1 cut(s) 392
BsrBI CCGCTC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 149
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 149
BssSI CACGAG 1 cut(s) 352
Bst2BI CACGAG 1 cut(s) 352
Bst4CI ACNGT 2 cut(s) 184, 404
BstAUI TGTACA 1 cut(s) 375
BstBAI YACGTR 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 240
BstF5I GGATG 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 58
BsuRI GGCC 2 cut(s) 50, 208
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 48
Csp6I GTAC 2 cut(s) 376, 451
CviAII CATG 3 cut(s) 196, 272, 341
CviQI GTAC 2 cut(s) 376, 451
EaeI YGGCCR 1 cut(s) 206
Eco32I GATATC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 192
EcoRV GATATC 1 cut(s) 67
FaeI CATG 3 cut(s) 199, 275, 344
FaiI YATR 5 cut(s) 160, 192, 197, 273, 342
FatI CATG 3 cut(s) 195, 271, 340
FblI GTMKAC 3 cut(s) 38, 345, 399
Fnu4HI GCNGC 2 cut(s) 134, 294
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 2 cut(s) 134, 294
FspBI CTAG 2 cut(s) 407, 455
GluI GCNGC 2 cut(s) 134, 294
GsuI CTGGAG 1 cut(s) 98
HaeIII GGCC 2 cut(s) 50, 208
HapII CCGG 1 cut(s) 150
Hin1II CATG 3 cut(s) 199, 275, 344
HincII GTYRAC 2 cut(s) 39, 346
HindII GTYRAC 2 cut(s) 39, 346
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 3 cut(s) 104, 370, 467
HpaII CCGG 1 cut(s) 150
HphI GGTGA 2 cut(s) 223, 379
Hpy166II GTNNAC 3 cut(s) 39, 346, 400
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 3 cut(s) 39, 346, 400
HpyAV CCTTC 2 cut(s) 167, 241
HpyCH4III ACNGT 2 cut(s) 184, 404
HpyCH4IV ACGT 2 cut(s) 89, 162
HpyCH4V TGCA 4 cut(s) 128, 258, 309, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpySE526I ACGT 2 cut(s) 89, 162
Hsp92II CATG 3 cut(s) 199, 275, 344
LpnPI CCDG 3 cut(s) 55, 62, 163
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 3 cut(s) 115, 157, 427
MaeI CTAG 2 cut(s) 407, 455
MaeII ACGT 2 cut(s) 89, 162
MbiI CCGCTC 1 cut(s) 293
MboII GAAGA 4 cut(s) 74, 94, 204, 273
MlsI TGGCCA 1 cut(s) 208
MluCI AATT 1 cut(s) 253
MluNI TGGCCA 1 cut(s) 208
MlyI GAGTC 1 cut(s) 461
MnlI CCTC 1 cut(s) 26
Mox20I TGGCCA 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 89
MscI TGGCCA 1 cut(s) 208
Msp20I TGGCCA 1 cut(s) 208
MspI CCGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 214
NlaIII CATG 3 cut(s) 199, 275, 344
NlaIV GGNNCC 1 cut(s) 392
NmeAIII GCCGAG 1 cut(s) 404
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 2 cut(s) 104, 370
PflFI GACNNNGTC 1 cut(s) 267
PkrI GCNGC 2 cut(s) 135, 295
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
Ppu21I YACGTR 1 cut(s) 163
Psp1406I AACGTT 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 392
PspPI GGNCC 1 cut(s) 48
PsyI GACNNNGTC 1 cut(s) 267
RsaI GTAC 2 cut(s) 377, 452
RsaNI GTAC 2 cut(s) 376, 451
SalI GTCGAC 2 cut(s) 37, 344
SatI GCNGC 2 cut(s) 134, 294
Sau96I GGNCC 1 cut(s) 48
SchI GAGTC 1 cut(s) 461
SfaNI GCATC 3 cut(s) 115, 157, 427
Sse9I AATT 1 cut(s) 253
SsiI CCGC 3 cut(s) 222, 293, 365
SspMI CTAG 2 cut(s) 407, 455
TaaI ACNGT 2 cut(s) 184, 404
TaiI ACGT 2 cut(s) 92, 165
TaqI TCGA 4 cut(s) 38, 123, 300, 345
TasI AATT 1 cut(s) 253
TatI WGTACW 1 cut(s) 375
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 2 cut(s) 104, 370
TscAI CASTG 1 cut(s) 249
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 1 cut(s) 249
Tth111I GACNNNGTC 1 cut(s) 267
XmiI GTMKAC 3 cut(s) 38, 345, 399
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 2 cut(s) 407, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.