pycom09g16660

FR47-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0013000
Physical Location & Seq
Forward (+)
16970889 .. 16972181
1293 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g16660.3

Sequence Viewer

Length: 606 bp
ATGAGAAAGAATAACGGTATTTGGTCGTGTAGGGAGAATTGCTTCTTAAAACAGAGTCATATATACCGAAATAAAGAAAAACAAAACCTCAAACTCCTCCCATATTCTTGCTTAATGGCGGCAGCTACAGGGGCCATCGTGGAGCTTCAGAGAAACTCTCCCAACTGGGCGACGATAGTGGAAGAAATAGTGAAGCTAGAGCGGAAGATTTTCCCGAAACACGAATCCCTTGCCCGAAGCTTTGACGAAGAACTGAGAAAGAAAAACAGCGGGCTTCTATATTACAGGGAACAACAAGTAGATGGTGAAGAAGTTGCAGGCTATGTCATGTACTCTTGGCCTTCTTCCCTGTACGCTTCCATCACAAAGCTGGCAGTGAAGGATACTTGTCGGAAGCAAGGCTACGGAGAAGCACTACTGACAGCAGCCATTCAGAAATGTAGAACAAGAAATGTCCAGCGCATAACACTTCACGTTGATCCCTTGAGAGCTCCTGCTGTGAATCTTTACAAGAAATTCGGTTTCAAAGTTGACAACCTCATACAAGGTTACTACTCTTCGGATCGAAATGCCTATAGAATGTACCTGGACTTTGATGCCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

202

Amino Acids

23.32

Weight (kDa)

9.43

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013000)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03650
fragaria_vesca FvH4_2g15130 FvH4_2g15130
malus_domestica MD09G1249800.v1.1
prunus_persica Prupe.3G155400_v2.0.a1
pyrus_communis pycom09g16660
rosa_chinensis RchiOBHm_Chr6g0277731
rosa_laevigata RLG00000013279
rosa_multiflora Rmu_sc0007109.1_g000020
rosa_roxburghii Rroxscaffold_7G00190990
rosa_rugosa Rorug06G0110500 Rorug06G0110600 Rorug06G0110700
rosa_samantha Rh6AG221200 Rh6BG225100 Rh6CG227600 Rh6DG218300
rosa_wichuraiana Rw6G019380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 202
AciI CCGC 3 cut(s) 119, 202, 270
AclWI GGATC 2 cut(s) 473, 570
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 3 cut(s) 332, 353, 584
AgsI TTSAA 1 cut(s) 526
AjnI CCWGG 1 cut(s) 585
AluBI AGCT 7 cut(s) 125, 145, 196, 240, 370, 491, 603
AluI AGCT 7 cut(s) 125, 145, 196, 240, 370, 491, 603
Alw21I GWGCWC 1 cut(s) 493
AlwI GGATC 2 cut(s) 473, 570
AoxI GGCC 2 cut(s) 132, 338
ApeKI GCWGC 2 cut(s) 122, 425
ApoI RAATTY 1 cut(s) 515
Asp700I GAANNNNTTC 2 cut(s) 41, 209
AspLEI GCGC 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 317
BanII GRGCYC 1 cut(s) 493
BarI GAAGNNNNNNTAC 2 cut(s) 386, 418
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 2 cut(s) 134, 437
BccI CCATC 3 cut(s) 143, 296, 368
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BciT130I CCWGG 1 cut(s) 587
BciVI GTATCC 1 cut(s) 376
BfaI CTAG 2 cut(s) 197, 604
BfmI CTRYAG 2 cut(s) 126, 574
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 3 cut(s) 120, 123, 426
BlsI GCNGC 3 cut(s) 121, 124, 427
Bme1390I CCNGG 1 cut(s) 587
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 587
BmrI ACTGGG 1 cut(s) 175
BmsI GCATC 1 cut(s) 586
BmuI ACTGGG 1 cut(s) 175
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BpuEI CTTGAG 1 cut(s) 505
Bse1I ACTGG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 587
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 134, 437
BshFI GGCC 2 cut(s) 134, 340
BsiHKAI GWGCWC 1 cut(s) 493
BsnI GGCC 2 cut(s) 134, 340
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 2 cut(s) 478, 562
BspACI CCGC 3 cut(s) 119, 202, 270
BspANI GGCC 2 cut(s) 134, 340
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 133
BspPI GGATC 2 cut(s) 473, 570
BsrBI CCGCTC 1 cut(s) 202
BsrI ACTGG 1 cut(s) 170
BssMI GATC 2 cut(s) 478, 562
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 562
BstC8I GCNNGC 4 cut(s) 272, 319, 372, 601
BstDEI CTNAG 1 cut(s) 254
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 2 cut(s) 481, 565
BstMBI GATC 2 cut(s) 478, 562
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 587
BstSCI CCNGG 1 cut(s) 585
BstSFI CTRYAG 2 cut(s) 126, 574
BstV1I GCAGC 2 cut(s) 134, 437
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 2 cut(s) 134, 340
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 4 cut(s) 272, 319, 372, 601
CfoI GCGC 1 cut(s) 462
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 3 cut(s) 331, 352, 583
CviAII CATG 1 cut(s) 328
CviQI GTAC 3 cut(s) 331, 352, 583
DdeI CTNAG 1 cut(s) 254
DpnI GATC 2 cut(s) 480, 564
DpnII GATC 2 cut(s) 478, 562
Eam1104I CTCTTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 562
Ecl136II GAGCTC 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 493
Eco53kI GAGCTC 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 585
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 1 cut(s) 331
FatI CATG 1 cut(s) 327
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 3 cut(s) 120, 123, 426
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 3 cut(s) 120, 123, 426
FspBI CTAG 2 cut(s) 197, 604
GlaI GCGC 1 cut(s) 461
GluI GCNGC 3 cut(s) 120, 123, 426
HaeIII GGCC 2 cut(s) 134, 340
HhaI GCGC 1 cut(s) 462
Hin1II CATG 1 cut(s) 331
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 238
HinfI GANTC 3 cut(s) 55, 224, 502
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 4 cut(s) 150, 393, 435, 562
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 532
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 351, 373
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 1 cut(s) 331
HspAI GCGC 1 cut(s) 460
Kzo9I GATC 2 cut(s) 478, 562
LmnI GCTCC 2 cut(s) 142, 496
Lsp1109I GCAGC 2 cut(s) 134, 437
LweI GCATC 1 cut(s) 586
MaeI CTAG 2 cut(s) 197, 604
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 548
MalI GATC 2 cut(s) 480, 564
MbiI CCGCTC 1 cut(s) 202
MboI GATC 2 cut(s) 478, 562
MboII GAAGA 6 cut(s) 194, 217, 260, 320, 336, 549
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 2 cut(s) 37, 515
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 3 cut(s) 98, 107, 548
MroXI GAANNNNTTC 2 cut(s) 41, 209
MseI TTAA 2 cut(s) 47, 113
MspA1I CMGCKG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 587
MvaI CCWGG 1 cut(s) 587
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 2 cut(s) 478, 562
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 133
PdmI GAANNNNTTC 2 cut(s) 41, 209
PfeI GAWTC 2 cut(s) 224, 502
PkrI GCNGC 3 cut(s) 121, 124, 427
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 493
Psp6I CCWGG 1 cut(s) 585
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 132
RsaI GTAC 3 cut(s) 332, 353, 584
RsaNI GTAC 3 cut(s) 331, 352, 583
SacI GAGCTC 1 cut(s) 493
SaqAI TTAA 2 cut(s) 47, 113
SatI GCNGC 3 cut(s) 120, 123, 426
Sau3AI GATC 2 cut(s) 478, 562
Sau96I GGNCC 1 cut(s) 132
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 587
SduI GDGCHC 1 cut(s) 493
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 2 cut(s) 126, 574
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 2 cut(s) 37, 515
SsiI CCGC 3 cut(s) 119, 202, 270
SspMI CTAG 2 cut(s) 197, 604
SstI GAGCTC 1 cut(s) 493
StyD4I CCNGG 1 cut(s) 585
TaaI ACNGT 1 cut(s) 17
TaiI ACGT 1 cut(s) 477
TaqI TCGA 1 cut(s) 565
TasI AATT 2 cut(s) 37, 515
TatI WGTACW 1 cut(s) 330
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 2 cut(s) 224, 502
Tru1I TTAA 2 cut(s) 47, 113
Tru9I TTAA 2 cut(s) 47, 113
TscAI CASTG 1 cut(s) 381
TseI GCWGC 2 cut(s) 122, 425
TspGWI ACGGA 1 cut(s) 420
TspRI CASTG 1 cut(s) 381
XapI RAATTY 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XmnI GAANNNNTTC 2 cut(s) 41, 209
XspI CTAG 2 cut(s) 197, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.