FR47-like protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WD40_CDC20-Fz | PF24807 | 3 - 177 | 1.8e-12 | CDC20/Fizzy WD40 domain |
| Beta-prop_WDR5 | PF25175 | 7 - 139 | 9.3e-18 | WDR5 beta-propeller domain |
| Beta-prop_TEP1_2nd | PF25047 | 12 - 155 | 4.8e-13 | TEP-1 second beta-propeller |
| Beta-prop_THOC3 | PF25174 | 13 - 197 | 4.8e-15 | THOC3 beta-propeller domain |
| Beta-prop_WDR3_2nd | PF25172 | 34 - 140 | 5.3e-07 | WDR3 second beta-propeller domain |
| Beta-prop_WDR3_1st | PF25173 | 83 - 178 | 2.2e-16 | WDR3 first beta-propeller domain |
| WD40_Gbeta | PF25391 | 84 - 176 | 8.5e-08 | G protein beta WD-40 repeat protein |
| WD40_Prp19 | PF24814 | 84 - 165 | 8.1e-11 | Prp19 WD40 domain |
| WD40_WDHD1_1st | PF24817 | 84 - 148 | 4.8e-06 | WDHD1 first WD40 domain |
| WDR55 | PF24796 | 85 - 256 | 3.8e-09 | WDR55 |
| Beta-prop_THOC3 | PF25174 | 85 - 313 | 2.4e-18 | THOC3 beta-propeller domain |
| WD40_Gbeta | PF25391 | 89 - 246 | 2.9e-10 | G protein beta WD-40 repeat protein |
| Beta-prop_WDR3_2nd | PF25172 | 119 - 222 | 4.1e-08 | WDR3 second beta-propeller domain |
| Beta-prop_WDR3_1st | PF25173 | 139 - 296 | 4e-19 | WDR3 first beta-propeller domain |
| WD40_Prp19 | PF24814 | 140 - 309 | 3.9e-14 | Prp19 WD40 domain |
| Beta-prop_WDR5 | PF25175 | 148 - 305 | 1.1e-19 | WDR5 beta-propeller domain |
| Beta-prop_SCAP | PF24017 | 149 - 297 | 5.5e-07 | SCAP Beta-propeller |
| Beta-prop_TEP1_2nd | PF25047 | 163 - 265 | 3.1e-06 | TEP-1 second beta-propeller |
| PFU | PF09070 | 341 - 450 | 5e-39 | PFU (PLAA family ubiquitin binding) |
| PUL | PF08324 | 487 - 750 | 7.1e-61 | PUL domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 473 |
| Acc36I | ACCTGC | 1 cut(s) | 334 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 765, 1142 |
| AccI | GTMKAC | 1 cut(s) | 1768 |
| AccII | CGCG | 1 cut(s) | 51 |
| AciI | CCGC | 6 cut(s) | 49, 51, 87, 95, 456, 1848 |
| AclWI | GGATC | 3 cut(s) | 1358, 1373, 2149 |
| AcoI | YGGCCR | 4 cut(s) | 3, 52, 421, 1697 |
| AcsI | RAATTY | 3 cut(s) | 75, 1649, 1978 |
| AcuI | CTGAAG | 4 cut(s) | 1301, 1640, 2063, 2262 |
| AcvI | CACGTG | 1 cut(s) | 116 |
| AfaI | GTAC | 4 cut(s) | 29, 873, 1407, 1617 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 765, 1142, 1312, 1388, 1389, 1469 |
| AflIII | ACRYGT | 1 cut(s) | 552 |
| AgeI | ACCGGT | 1 cut(s) | 656 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 731 |
| AhlI | ACTAGT | 1 cut(s) | 1862 |
| AjiI | CACGTC | 2 cut(s) | 1489, 1766 |
| AjnI | CCWGG | 7 cut(s) | 802, 891, 997, 1021, 1408, 1551, 1592 |
| AleI | CACNNNNGTG | 1 cut(s) | 281 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 594, 626, 768, 800, 809, 841 |
| Alw21I | GWGCWC | 2 cut(s) | 48, 1765 |
| Alw26I | GTCTC | 3 cut(s) | 366, 1675, 2222 |
| AlwI | GGATC | 3 cut(s) | 1358, 1373, 2149 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 575 |
| Ama87I | CYCGRG | 1 cut(s) | 1897 |
| ApaI | GGGCCC | 1 cut(s) | 212 |
| ApeKI | GCWGC | 3 cut(s) | 39, 1228, 2072 |
| ApoI | RAATTY | 3 cut(s) | 75, 1649, 1978 |
| AsiGI | ACCGGT | 1 cut(s) | 656 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1352 |
| AspLEI | GCGC | 2 cut(s) | 39, 172 |
| AspS9I | GGNCC | 9 cut(s) | 138, 145, 190, 208, 209, 316, 1133, 1392, 2041 |
| AsuC2I | CCSGG | 1 cut(s) | 2123 |
| AsuHPI | GGTGA | 4 cut(s) | 646, 671, 1223, 1673 |
| AvaI | CYCGRG | 1 cut(s) | 1897 |
| AvaII | GGWCC | 4 cut(s) | 138, 145, 316, 2041 |
| BaeGI | GKGCMC | 1 cut(s) | 212 |
| BalI | TGGCCA | 3 cut(s) | 5, 423, 1699 |
| BanII | GRGCYC | 4 cut(s) | 48, 212, 231, 652 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1217, 1249 |
| BauI | CACGAG | 1 cut(s) | 196 |
| BbrPI | CACGTG | 1 cut(s) | 116 |
| BbsI | GAAGAC | 2 cut(s) | 66, 308 |
| Bbv12I | GWGCWC | 2 cut(s) | 48, 1765 |
| BbvI | GCAGC | 3 cut(s) | 26, 1215, 2059 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 166, 200 |
| BciT130I | CCWGG | 7 cut(s) | 804, 893, 999, 1023, 1410, 1553, 1594 |
| BciVI | GTATCC | 1 cut(s) | 252 |
| BcnI | CCSGG | 1 cut(s) | 2123 |
| BcoDI | GTCTC | 3 cut(s) | 366, 1675, 2222 |
| BcuI | ACTAGT | 1 cut(s) | 1862 |
| BfaI | CTAG | 5 cut(s) | 914, 1004, 1644, 1863, 1940 |
| BfuAI | ACCTGC | 1 cut(s) | 334 |
| BfuI | GTATCC | 1 cut(s) | 252 |
| BisI | GCNGC | 6 cut(s) | 40, 52, 88, 456, 1229, 2073 |
| BlsI | GCNGC | 6 cut(s) | 41, 53, 89, 457, 1230, 2074 |
| BmcAI | AGTACT | 1 cut(s) | 1617 |
| Bme1390I | CCNGG | 8 cut(s) | 804, 893, 999, 1023, 1410, 1553, 1594, 2123 |
| Bme18I | GGWCC | 4 cut(s) | 138, 145, 316, 2041 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 731 |
| BmeT110I | CYCGRG | 1 cut(s) | 1897 |
| BmgBI | CACGTC | 2 cut(s) | 1489, 1766 |
| BmgT120I | GGNCC | 9 cut(s) | 138, 145, 190, 208, 209, 316, 1133, 1392, 2041 |
| BmiI | GGNNCC | 5 cut(s) | 147, 210, 1027, 1393, 2161 |
| BmrFI | CCNGG | 8 cut(s) | 804, 893, 999, 1023, 1410, 1553, 1594, 2123 |
| BmrI | ACTGGG | 3 cut(s) | 206, 315, 1398 |
| BmsI | GCATC | 5 cut(s) | 363, 808, 1933, 2101, 2139 |
| BmuI | ACTGGG | 3 cut(s) | 206, 315, 1398 |
| BpiI | GAAGAC | 2 cut(s) | 66, 308 |
| BpmI | CTGGAG | 1 cut(s) | 1760 |
| BpuEI | CTTGAG | 3 cut(s) | 311, 941, 1496 |
| BpuMI | CCSGG | 1 cut(s) | 2123 |
| Bsa29I | ATCGAT | 2 cut(s) | 15, 1240 |
| BsaAI | YACGTR | 3 cut(s) | 116, 875, 1405 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2177 |
| BsaJI | CCNNGG | 5 cut(s) | 6, 49, 141, 998, 2088 |
| BsaWI | WCCGGW | 1 cut(s) | 656 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 363, 393, 768, 798 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 765, 1142, 1312, 1388, 1389, 1469 |
| Bse118I | RCCGGY | 3 cut(s) | 162, 172, 656 |
| Bse3DI | GCAATG | 4 cut(s) | 97, 597, 1665, 1713 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2177 |
| BseBI | CCWGG | 7 cut(s) | 804, 893, 999, 1023, 1410, 1553, 1594 |
| BseCI | ATCGAT | 2 cut(s) | 15, 1240 |
| BseDI | CCNNGG | 5 cut(s) | 6, 49, 141, 998, 2088 |
| BseGI | GGATG | 3 cut(s) | 799, 823, 1743 |
| BseJI | GATNNNNATC | 1 cut(s) | 2177 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 765, 1142, 1312, 1388, 1389, 1469 |
| BseMI | GCAATG | 4 cut(s) | 97, 597, 1665, 1713 |
| BseMII | CTCAG | 2 cut(s) | 959, 1508 |
| BseRI | GAGGAG | 2 cut(s) | 251, 2105 |
| BseSI | GKGCMC | 1 cut(s) | 212 |
| BseXI | GCAGC | 3 cut(s) | 26, 1215, 2059 |
| BseYI | CCCAGC | 2 cut(s) | 187, 1597 |
| BsgI | GTGCAG | 1 cut(s) | 2058 |
| Bsh1236I | CGCG | 1 cut(s) | 51 |
| BshTI | ACCGGT | 1 cut(s) | 656 |
| BshVI | ATCGAT | 2 cut(s) | 15, 1240 |
| BsiHKAI | GWGCWC | 2 cut(s) | 48, 1765 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1897 |
| BsiSI | CCGG | 4 cut(s) | 163, 173, 657, 2122 |
| BsiWI | CGTACG | 1 cut(s) | 871 |
| BslFI | GGGAC | 4 cut(s) | 131, 308, 345, 1076 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 765, 1142, 1312, 1388, 1389, 1469 |
| BsmAI | GTCTC | 3 cut(s) | 366, 1675, 2222 |
| BsmFI | GGGAC | 4 cut(s) | 131, 308, 345, 1076 |
| BsmI | GAATGC | 1 cut(s) | 1479 |
| BsoBI | CYCGRG | 1 cut(s) | 1897 |
| Bsp120I | GGGCCC | 1 cut(s) | 208 |
| Bsp1286I | GDGCHC | 5 cut(s) | 48, 212, 231, 652, 1765 |
| Bsp143I | GATC | 5 cut(s) | 118, 1241, 1363, 1378, 2141 |
| Bsp19I | CCATGG | 1 cut(s) | 6 |
| BspACI | CCGC | 6 cut(s) | 49, 51, 87, 95, 456, 1848 |
| BspCNI | CTCAG | 2 cut(s) | 958, 1507 |
| BspDI | ATCGAT | 2 cut(s) | 15, 1240 |
| BspFNI | CGCG | 1 cut(s) | 51 |
| BspLI | GGNNCC | 5 cut(s) | 147, 210, 1027, 1393, 2161 |
| BspMI | ACCTGC | 1 cut(s) | 334 |
| BspPI | GGATC | 3 cut(s) | 1358, 1373, 2149 |
| BsrDI | GCAATG | 4 cut(s) | 97, 597, 1665, 1713 |
| BsrFI | RCCGGY | 3 cut(s) | 162, 172, 656 |
| BssAI | RCCGGY | 3 cut(s) | 162, 172, 656 |
| BssECI | CCNNGG | 5 cut(s) | 6, 49, 141, 998, 2088 |
| BssMI | GATC | 5 cut(s) | 118, 1241, 1363, 1378, 2141 |
| BssSI | CACGAG | 1 cut(s) | 196 |
| BssT1I | CCWWGG | 2 cut(s) | 6, 141 |
| Bst2BI | CACGAG | 1 cut(s) | 196 |
| Bst2UI | CCWGG | 7 cut(s) | 804, 893, 999, 1023, 1410, 1553, 1594 |
| Bst4CI | ACNGT | 7 cut(s) | 127, 577, 886, 1307, 1545, 1986, 2045 |
| Bst6I | CTCTTC | 1 cut(s) | 959 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2132 |
| BstBAI | YACGTR | 3 cut(s) | 116, 875, 1405 |
| BstC8I | GCNNGC | 3 cut(s) | 44, 174, 491 |
| BstDEI | CTNAG | 4 cut(s) | 945, 1044, 1464, 1494 |
| BstDSI | CCRYGG | 2 cut(s) | 6, 49 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1467 |
| BstF5I | GGATG | 3 cut(s) | 799, 823, 1743 |
| BstFNI | CGCG | 1 cut(s) | 51 |
| BstHHI | GCGC | 2 cut(s) | 39, 172 |
| BstKTI | GATC | 5 cut(s) | 121, 1244, 1366, 1381, 2144 |
| BstMAI | GTCTC | 3 cut(s) | 366, 1675, 2222 |
| BstMBI | GATC | 5 cut(s) | 118, 1241, 1363, 1378, 2141 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 43, 48, 87, 101, 452, 464, 2132, 2210 |
| BstNI | CCWGG | 7 cut(s) | 804, 893, 999, 1023, 1410, 1553, 1594 |
| BstNSI | RCATGY | 4 cut(s) | 546, 719, 858, 1784 |
| BstSCI | CCNGG | 8 cut(s) | 802, 891, 997, 1021, 1408, 1551, 1592, 2121 |
| BstSLI | GKGCMC | 1 cut(s) | 212 |
| BstSNI | TACGTA | 2 cut(s) | 875, 1405 |
| BstUI | CGCG | 1 cut(s) | 51 |
| BstV1I | GCAGC | 3 cut(s) | 26, 1215, 2059 |
| BstV2I | GAAGAC | 2 cut(s) | 66, 308 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 219, 1340 |
| Bsu15I | ATCGAT | 2 cut(s) | 15, 1240 |
| BsuI | GTATCC | 1 cut(s) | 252 |
| BsuTUI | ATCGAT | 2 cut(s) | 15, 1240 |
| BtgI | CCRYGG | 2 cut(s) | 6, 49 |
| BtgZI | GCGATG | 2 cut(s) | 340, 1910 |
| BtrI | CACGTC | 2 cut(s) | 1489, 1766 |
| BtsCI | GGATG | 3 cut(s) | 799, 823, 1743 |
| BtsI | GCAGTG | 2 cut(s) | 1260, 1936 |
| BtsIMutI | CAGTG | 8 cut(s) | 219, 498, 1036, 1260, 1386, 1402, 1936, 2144 |
| BveI | ACCTGC | 1 cut(s) | 334 |
| Cac8I | GCNNGC | 3 cut(s) | 44, 174, 491 |
| CaiI | CAGNNNCTG | 1 cut(s) | 575 |
| CfoI | GCGC | 2 cut(s) | 39, 172 |
| Cfr10I | RCCGGY | 3 cut(s) | 162, 172, 656 |
| Cfr13I | GGNCC | 9 cut(s) | 138, 145, 190, 208, 209, 316, 1133, 1392, 2041 |
| Cfr42I | CCGCGG | 1 cut(s) | 52 |
| ClaI | ATCGAT | 2 cut(s) | 15, 1240 |
| CseI | GACGC | 1 cut(s) | 1142 |
| Csp6I | GTAC | 4 cut(s) | 28, 872, 1406, 1616 |
| CspAI | ACCGGT | 1 cut(s) | 656 |
| CviQI | GTAC | 4 cut(s) | 28, 872, 1406, 1616 |
| DdeI | CTNAG | 4 cut(s) | 945, 1044, 1464, 1494 |
| DpnI | GATC | 5 cut(s) | 120, 1243, 1365, 1380, 2143 |
| DpnII | GATC | 5 cut(s) | 118, 1241, 1363, 1378, 2141 |
| DraI | TTTAAA | 2 cut(s) | 405, 522 |
| DriI | GACNNNNNGTC | 1 cut(s) | 731 |
| EaeI | YGGCCR | 4 cut(s) | 3, 52, 421, 1697 |
| Eam1104I | CTCTTC | 1 cut(s) | 959 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 731 |
| EarI | CTCTTC | 1 cut(s) | 959 |
| Ecl136II | GAGCTC | 1 cut(s) | 46 |
| Eco105I | TACGTA | 2 cut(s) | 875, 1405 |
| Eco130I | CCWWGG | 2 cut(s) | 6, 141 |
| Eco24I | GRGCYC | 4 cut(s) | 48, 212, 231, 652 |
| Eco32I | GATATC | 1 cut(s) | 13 |
| Eco47I | GGWCC | 4 cut(s) | 138, 145, 316, 2041 |
| Eco53kI | GAGCTC | 1 cut(s) | 46 |
| Eco57I | CTGAAG | 4 cut(s) | 1301, 1640, 2063, 2262 |
| Eco72I | CACGTG | 1 cut(s) | 116 |
| Eco88I | CYCGRG | 1 cut(s) | 1897 |
| EcoICRI | GAGCTC | 1 cut(s) | 46 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1467 |
| EcoRII | CCWGG | 7 cut(s) | 802, 891, 997, 1021, 1408, 1551, 1592 |
| EcoRV | GATATC | 1 cut(s) | 13 |
| EcoT14I | CCWWGG | 2 cut(s) | 6, 141 |
| EcoT22I | ATGCAT | 1 cut(s) | 1084 |
| EcoT38I | GRGCYC | 4 cut(s) | 48, 212, 231, 652 |
| ErhI | CCWWGG | 2 cut(s) | 6, 141 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1461, 1493, 1550, 1582 |
| FaqI | GGGAC | 4 cut(s) | 131, 308, 345, 1076 |
| FauI | CCCGC | 2 cut(s) | 88, 1855 |
| FauNDI | CATATG | 3 cut(s) | 1078, 1255, 1993 |
| FblI | GTMKAC | 1 cut(s) | 1768 |
| Fnu4HI | GCNGC | 6 cut(s) | 40, 52, 88, 456, 1229, 2073 |
| FokI | GGATG | 3 cut(s) | 786, 830, 1750 |
| FriOI | GRGCYC | 4 cut(s) | 48, 212, 231, 652 |
| Fsp4HI | GCNGC | 6 cut(s) | 40, 52, 88, 456, 1229, 2073 |
| FspBI | CTAG | 5 cut(s) | 914, 1004, 1644, 1863, 1940 |
| GlaI | GCGC | 2 cut(s) | 38, 171 |
| GluI | GCNGC | 6 cut(s) | 40, 52, 88, 456, 1229, 2073 |
| GsaI | CCCAGC | 2 cut(s) | 191, 1601 |
| GsuI | CTGGAG | 1 cut(s) | 1760 |
| HapII | CCGG | 4 cut(s) | 163, 173, 657, 2122 |
| HgaI | GACGC | 1 cut(s) | 1142 |
| HhaI | GCGC | 2 cut(s) | 39, 172 |
| Hin6I | GCGC | 2 cut(s) | 37, 170 |
| HinP1I | GCGC | 2 cut(s) | 37, 170 |
| HincII | GTYRAC | 2 cut(s) | 1198, 2254 |
| HindII | GTYRAC | 2 cut(s) | 1198, 2254 |
| HindIII | AAGCTT | 2 cut(s) | 476, 2217 |
| HpaII | CCGG | 4 cut(s) | 163, 173, 657, 2122 |
| HphI | GGTGA | 4 cut(s) | 646, 671, 1223, 1673 |
| Hpy166II | GTNNAC | 6 cut(s) | 394, 889, 1198, 1310, 1769, 2254 |
| Hpy8I | GTNNAC | 6 cut(s) | 394, 889, 1198, 1310, 1769, 2254 |
| Hpy99I | CGWCG | 2 cut(s) | 68, 158 |
| HpyAV | CCTTC | 9 cut(s) | 159, 242, 307, 492, 1276, 1615, 1652, 2042, 2150 |
| HpyCH4III | ACNGT | 7 cut(s) | 127, 577, 886, 1307, 1545, 1986, 2045 |
| HpyCH4IV | ACGT | 7 cut(s) | 66, 115, 554, 874, 1404, 1488, 1765 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 43, 48, 87, 101, 452, 464, 2132, 2210 |
| HpyF3I | CTNAG | 4 cut(s) | 945, 1044, 1464, 1494 |
| HpySE526I | ACGT | 7 cut(s) | 66, 115, 554, 874, 1404, 1488, 1765 |
| HspAI | GCGC | 2 cut(s) | 37, 170 |
| KroI | GCCGGC | 1 cut(s) | 172 |
| KroNI | GCCGGC | 1 cut(s) | 174 |
| KspI | CCGCGG | 1 cut(s) | 52 |
| Kzo9I | GATC | 5 cut(s) | 118, 1241, 1363, 1378, 2141 |
| LmnI | GCTCC | 3 cut(s) | 51, 1760, 2165 |
| Lsp1109I | GCAGC | 3 cut(s) | 26, 1215, 2059 |
| LweI | GCATC | 5 cut(s) | 363, 808, 1933, 2101, 2139 |
| MaeI | CTAG | 5 cut(s) | 914, 1004, 1644, 1863, 1940 |
| MaeII | ACGT | 7 cut(s) | 66, 115, 554, 874, 1404, 1488, 1765 |
| MaeIII | GTNAC | 7 cut(s) | 346, 496, 847, 1661, 1876, 1914, 2055 |
| MalI | GATC | 5 cut(s) | 120, 1243, 1365, 1380, 2143 |
| MboI | GATC | 5 cut(s) | 118, 1241, 1363, 1378, 2141 |
| MfeI | CAATTG | 2 cut(s) | 32, 1919 |
| MhlI | GDGCHC | 5 cut(s) | 48, 212, 231, 652, 1765 |
| MlsI | TGGCCA | 3 cut(s) | 5, 423, 1699 |
| MluNI | TGGCCA | 3 cut(s) | 5, 423, 1699 |
| MlyI | GAGTC | 3 cut(s) | 876, 932, 937 |
| MmeI | TCCRAC | 3 cut(s) | 177, 952, 1391 |
| Mox20I | TGGCCA | 3 cut(s) | 5, 423, 1699 |
| Mph1103I | ATGCAT | 1 cut(s) | 1084 |
| MreI | CGCCGGCG | 1 cut(s) | 172 |
| MroNI | GCCGGC | 1 cut(s) | 172 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1352 |
| MscI | TGGCCA | 3 cut(s) | 5, 423, 1699 |
| MseI | TTAA | 6 cut(s) | 404, 521, 668, 1574, 1611, 1859 |
| MslI | CAYNNNNRTG | 5 cut(s) | 281, 1081, 1755, 1929, 2261 |
| Msp20I | TGGCCA | 3 cut(s) | 5, 423, 1699 |
| MspA1I | CMGCKG | 2 cut(s) | 51, 2072 |
| MspI | CCGG | 4 cut(s) | 163, 173, 657, 2122 |
| MspR9I | CCNGG | 8 cut(s) | 804, 893, 999, 1023, 1410, 1553, 1594, 2123 |
| MunI | CAATTG | 2 cut(s) | 32, 1919 |
| Mva1269I | GAATGC | 1 cut(s) | 1479 |
| MvaI | CCWGG | 7 cut(s) | 804, 893, 999, 1023, 1410, 1553, 1594 |
| MvnI | CGCG | 1 cut(s) | 51 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 43, 48, 87, 101, 452, 464, 2132, 2210 |
| NaeI | GCCGGC | 1 cut(s) | 174 |
| NciI | CCSGG | 1 cut(s) | 2123 |
| NcoI | CCATGG | 1 cut(s) | 6 |
| NdeI | CATATG | 3 cut(s) | 1078, 1255, 1993 |
| NdeII | GATC | 5 cut(s) | 118, 1241, 1363, 1378, 2141 |
| NgoMIV | GCCGGC | 1 cut(s) | 172 |
| NlaIV | GGNNCC | 5 cut(s) | 147, 210, 1027, 1393, 2161 |
| NmeAIII | GCCGAG | 1 cut(s) | 2113 |
| NmuCI | GTSAC | 4 cut(s) | 496, 847, 1661, 2055 |
| NsiI | ATGCAT | 1 cut(s) | 1084 |
| NspI | RCATGY | 4 cut(s) | 546, 719, 858, 1784 |
| OliI | CACNNNNGTG | 1 cut(s) | 281 |
| PaeR7I | CTCGAG | 1 cut(s) | 1897 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 63, 2160 |
| PctI | GAATGC | 1 cut(s) | 1479 |
| PdiI | GCCGGC | 1 cut(s) | 174 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1352 |
| PfeI | GAWTC | 8 cut(s) | 181, 434, 710, 908, 1018, 1288, 1507, 1936 |
| Pfl23II | CGTACG | 1 cut(s) | 871 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 765, 1142 |
| PfoI | TCCNGGA | 1 cut(s) | 1021 |
| PinAI | ACCGGT | 1 cut(s) | 656 |
| PkrI | GCNGC | 6 cut(s) | 41, 53, 89, 457, 1230, 2074 |
| PleI | GAGTC | 3 cut(s) | 875, 931, 937 |
| PmaCI | CACGTG | 1 cut(s) | 116 |
| PmlI | CACGTG | 1 cut(s) | 116 |
| PpsI | GAGTC | 3 cut(s) | 875, 931, 937 |
| Ppu21I | YACGTR | 3 cut(s) | 116, 875, 1405 |
| PsiI | TTATAA | 1 cut(s) | 473 |
| Psp124BI | GAGCTC | 1 cut(s) | 48 |
| Psp6I | CCWGG | 7 cut(s) | 802, 891, 997, 1021, 1408, 1551, 1592 |
| PspCI | CACGTG | 1 cut(s) | 116 |
| PspFI | CCCAGC | 2 cut(s) | 187, 1597 |
| PspGI | CCWGG | 7 cut(s) | 802, 891, 997, 1021, 1408, 1551, 1592 |
| PspLI | CGTACG | 1 cut(s) | 871 |
| PspN4I | GGNNCC | 5 cut(s) | 147, 210, 1027, 1393, 2161 |
| PspOMI | GGGCCC | 1 cut(s) | 208 |
| PspPI | GGNCC | 9 cut(s) | 138, 145, 190, 208, 209, 316, 1133, 1392, 2041 |
| PspXI | VCTCGAGB | 1 cut(s) | 1897 |
| PstNI | CAGNNNCTG | 1 cut(s) | 575 |
| PvuII | CAGCTG | 1 cut(s) | 2072 |
| RsaI | GTAC | 4 cut(s) | 29, 873, 1407, 1617 |
| RsaNI | GTAC | 4 cut(s) | 28, 872, 1406, 1616 |
| RseI | CAYNNNNRTG | 5 cut(s) | 281, 1081, 1755, 1929, 2261 |
| SacI | GAGCTC | 1 cut(s) | 48 |
| SacII | CCGCGG | 1 cut(s) | 52 |
| SaqAI | TTAA | 6 cut(s) | 404, 521, 668, 1574, 1611, 1859 |
| SatI | GCNGC | 6 cut(s) | 40, 52, 88, 456, 1229, 2073 |
| Sau3AI | GATC | 5 cut(s) | 118, 1241, 1363, 1378, 2141 |
| Sau96I | GGNCC | 9 cut(s) | 138, 145, 190, 208, 209, 316, 1133, 1392, 2041 |
| ScaI | AGTACT | 1 cut(s) | 1617 |
| SchI | GAGTC | 3 cut(s) | 876, 932, 937 |
| ScrFI | CCNGG | 8 cut(s) | 804, 893, 999, 1023, 1410, 1553, 1594, 2123 |
| SduI | GDGCHC | 5 cut(s) | 48, 212, 231, 652, 1765 |
| SfaNI | GCATC | 5 cut(s) | 363, 808, 1933, 2101, 2139 |
| Sfr274I | CTCGAG | 1 cut(s) | 1897 |
| Sfr303I | CCGCGG | 1 cut(s) | 52 |
| SgrAI | CRCCGGYG | 2 cut(s) | 172, 656 |
| SgrBI | CCGCGG | 1 cut(s) | 52 |
| SinI | GGWCC | 4 cut(s) | 138, 145, 316, 2041 |
| SlaI | CTCGAG | 1 cut(s) | 1897 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 281, 1081, 1755, 1929, 2261 |
| SmlI | CTYRAG | 4 cut(s) | 326, 920, 1511, 1897 |
| SmoI | CTYRAG | 4 cut(s) | 326, 920, 1511, 1897 |
| SnaBI | TACGTA | 2 cut(s) | 875, 1405 |
| SpeI | ACTAGT | 1 cut(s) | 1862 |
| SsiI | CCGC | 6 cut(s) | 49, 51, 87, 95, 456, 1848 |
| SspI | AATATT | 1 cut(s) | 2200 |
| SspMI | CTAG | 5 cut(s) | 914, 1004, 1644, 1863, 1940 |
| SstI | GAGCTC | 1 cut(s) | 48 |
| StyD4I | CCNGG | 8 cut(s) | 802, 891, 997, 1021, 1408, 1551, 1592, 2121 |
| StyI | CCWWGG | 2 cut(s) | 6, 141 |
| TaaI | ACNGT | 7 cut(s) | 127, 577, 886, 1307, 1545, 1986, 2045 |
| TaiI | ACGT | 7 cut(s) | 69, 118, 557, 877, 1407, 1491, 1768 |
| TaqI | TCGA | 6 cut(s) | 15, 121, 1240, 1898, 2154, 2181 |
| TatI | WGTACW | 1 cut(s) | 1615 |
| TauI | GCSGC | 3 cut(s) | 54, 90, 458 |
| TfiI | GAWTC | 8 cut(s) | 181, 434, 710, 908, 1018, 1288, 1507, 1936 |
| Tru1I | TTAA | 6 cut(s) | 404, 521, 668, 1574, 1611, 1859 |
| Tru9I | TTAA | 6 cut(s) | 404, 521, 668, 1574, 1611, 1859 |
| TscAI | CASTG | 8 cut(s) | 219, 505, 1036, 1267, 1393, 1402, 1936, 2151 |
| TseFI | GTSAC | 4 cut(s) | 496, 847, 1661, 2055 |
| TseI | GCWGC | 3 cut(s) | 39, 1228, 2072 |
| Tsp45I | GTSAC | 4 cut(s) | 496, 847, 1661, 2055 |
| TspDTI | ATGAA | 5 cut(s) | 372, 1163, 1315, 1593, 1953 |
| TspGWI | ACGGA | 2 cut(s) | 1237, 2152 |
| TspRI | CASTG | 8 cut(s) | 219, 505, 1036, 1267, 1393, 1402, 1936, 2151 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 765, 1142 |
| VpaK11BI | GGWCC | 4 cut(s) | 138, 145, 316, 2041 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1467 |
| XapI | RAATTY | 3 cut(s) | 75, 1649, 1978 |
| XbaI | TCTAGA | 1 cut(s) | 1939 |
| XceI | RCATGY | 4 cut(s) | 546, 719, 858, 1784 |
| XhoI | CTCGAG | 1 cut(s) | 1897 |
| XmiI | GTMKAC | 1 cut(s) | 1768 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1352 |
| XspI | CTAG | 5 cut(s) | 914, 1004, 1644, 1863, 1940 |
| ZrmI | AGTACT | 1 cut(s) | 1617 |
| Zsp2I | ATGCAT | 1 cut(s) | 1084 |