ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 519 |
| Acc36I | ACCTGC | 1 cut(s) | 447 |
| AccI | GTMKAC | 2 cut(s) | 69, 672 |
| AccII | CGCG | 1 cut(s) | 130 |
| AciI | CCGC | 2 cut(s) | 134, 288 |
| AclWI | GGATC | 1 cut(s) | 273 |
| AcsI | RAATTY | 1 cut(s) | 604 |
| AfaI | GTAC | 1 cut(s) | 299 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 181, 262, 562, 667 |
| AgsI | TTSAA | 5 cut(s) | 199, 211, 326, 367, 487 |
| AjiI | CACGTC | 1 cut(s) | 104 |
| AluBI | AGCT | 3 cut(s) | 30, 116, 481 |
| AluI | AGCT | 3 cut(s) | 30, 116, 481 |
| AlwI | GGATC | 1 cut(s) | 273 |
| AoxI | GGCC | 1 cut(s) | 337 |
| ApeKI | GCWGC | 3 cut(s) | 169, 618, 621 |
| ApoI | RAATTY | 1 cut(s) | 604 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 149 |
| AspLEI | GCGC | 6 cut(s) | 92, 130, 229, 237, 261, 520 |
| AsuC2I | CCSGG | 1 cut(s) | 87 |
| AsuHPI | GGTGA | 3 cut(s) | 68, 397, 509 |
| AsuII | TTCGAA | 1 cut(s) | 143 |
| AsuNHI | GCTAGC | 1 cut(s) | 26 |
| BbsI | GAAGAC | 1 cut(s) | 235 |
| BbvI | GCAGC | 3 cut(s) | 181, 605, 633 |
| BccI | CCATC | 3 cut(s) | 329, 365, 406 |
| BcnI | CCSGG | 1 cut(s) | 87 |
| BfaI | CTAG | 3 cut(s) | 27, 53, 125 |
| BfmI | CTRYAG | 2 cut(s) | 429, 619 |
| BfoI | RGCGCY | 2 cut(s) | 93, 238 |
| BfuAI | ACCTGC | 1 cut(s) | 447 |
| BglII | AGATCT | 1 cut(s) | 585 |
| BisI | GCNGC | 3 cut(s) | 170, 619, 622 |
| BlsI | GCNGC | 3 cut(s) | 171, 620, 623 |
| Bme1390I | CCNGG | 1 cut(s) | 87 |
| BmgBI | CACGTC | 1 cut(s) | 104 |
| BmrFI | CCNGG | 1 cut(s) | 87 |
| BmsI | GCATC | 2 cut(s) | 195, 639 |
| BmtI | GCTAGC | 1 cut(s) | 30 |
| BpiI | GAAGAC | 1 cut(s) | 235 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 572, 604 |
| Bpu14I | TTCGAA | 1 cut(s) | 143 |
| BpuEI | CTTGAG | 1 cut(s) | 96 |
| BpuMI | CCSGG | 1 cut(s) | 87 |
| Bsa29I | ATCGAT | 1 cut(s) | 12 |
| BsaWI | WCCGGW | 1 cut(s) | 349 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 181, 262, 562, 667 |
| Bse118I | RCCGGY | 1 cut(s) | 406 |
| Bse1I | ACTGG | 2 cut(s) | 499, 567 |
| Bse3DI | GCAATG | 1 cut(s) | 525 |
| BseCI | ATCGAT | 1 cut(s) | 12 |
| BseGI | GGATG | 3 cut(s) | 357, 478, 630 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 181, 262, 562, 667 |
| BseMI | GCAATG | 1 cut(s) | 525 |
| BseNI | ACTGG | 2 cut(s) | 499, 567 |
| BseRI | GAGGAG | 1 cut(s) | 596 |
| BseXI | GCAGC | 3 cut(s) | 181, 605, 633 |
| BsgI | GTGCAG | 2 cut(s) | 188, 236 |
| Bsh1236I | CGCG | 1 cut(s) | 130 |
| Bsh1285I | CGRYCG | 2 cut(s) | 12, 450 |
| BshFI | GGCC | 1 cut(s) | 339 |
| BshVI | ATCGAT | 1 cut(s) | 12 |
| BsiEI | CGRYCG | 2 cut(s) | 12, 450 |
| BsiSI | CCGG | 3 cut(s) | 86, 350, 407 |
| BslFI | GGGAC | 1 cut(s) | 627 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 181, 262, 562, 667 |
| BsmFI | GGGAC | 1 cut(s) | 627 |
| BsnI | GGCC | 1 cut(s) | 339 |
| Bsp119I | TTCGAA | 1 cut(s) | 143 |
| Bsp143I | GATC | 5 cut(s) | 9, 265, 447, 585, 693 |
| BspACI | CCGC | 2 cut(s) | 134, 288 |
| BspANI | GGCC | 1 cut(s) | 339 |
| BspDI | ATCGAT | 1 cut(s) | 12 |
| BspFNI | CGCG | 1 cut(s) | 130 |
| BspMAI | CTGCAG | 1 cut(s) | 623 |
| BspMI | ACCTGC | 1 cut(s) | 447 |
| BspOI | GCTAGC | 1 cut(s) | 30 |
| BspPI | GGATC | 1 cut(s) | 273 |
| BspQI | GCTCTTC | 1 cut(s) | 54 |
| BspT104I | TTCGAA | 1 cut(s) | 143 |
| BsrDI | GCAATG | 1 cut(s) | 525 |
| BsrFI | RCCGGY | 1 cut(s) | 406 |
| BsrI | ACTGG | 2 cut(s) | 499, 567 |
| BssAI | RCCGGY | 1 cut(s) | 406 |
| BssMI | GATC | 5 cut(s) | 9, 265, 447, 585, 693 |
| Bst4CI | ACNGT | 2 cut(s) | 157, 294 |
| Bst6I | CTCTTC | 1 cut(s) | 54 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 627 |
| BstBI | TTCGAA | 1 cut(s) | 143 |
| BstC8I | GCNNGC | 3 cut(s) | 28, 45, 454 |
| BstF5I | GGATG | 3 cut(s) | 357, 478, 630 |
| BstFNI | CGCG | 1 cut(s) | 130 |
| BstH2I | RGCGCY | 2 cut(s) | 93, 238 |
| BstHHI | GCGC | 6 cut(s) | 92, 130, 229, 237, 261, 520 |
| BstKTI | GATC | 5 cut(s) | 12, 268, 450, 588, 696 |
| BstMBI | GATC | 5 cut(s) | 9, 265, 447, 585, 693 |
| BstMCI | CGRYCG | 2 cut(s) | 12, 450 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 449, 627 |
| BstSCI | CCNGG | 1 cut(s) | 85 |
| BstSFI | CTRYAG | 2 cut(s) | 429, 619 |
| BstUI | CGCG | 1 cut(s) | 130 |
| BstV1I | GCAGC | 3 cut(s) | 181, 605, 633 |
| BstV2I | GAAGAC | 1 cut(s) | 235 |
| BstX2I | RGATCY | 1 cut(s) | 585 |
| BstYI | RGATCY | 1 cut(s) | 585 |
| Bsu15I | ATCGAT | 1 cut(s) | 12 |
| BsuRI | GGCC | 1 cut(s) | 339 |
| BsuTUI | ATCGAT | 1 cut(s) | 12 |
| BtgZI | GCGATG | 2 cut(s) | 424, 425 |
| BtrI | CACGTC | 1 cut(s) | 104 |
| BtsCI | GGATG | 3 cut(s) | 357, 478, 630 |
| BtsIMutI | CAGTG | 2 cut(s) | 311, 492 |
| BveI | ACCTGC | 1 cut(s) | 447 |
| Cac8I | GCNNGC | 3 cut(s) | 28, 45, 454 |
| CfoI | GCGC | 6 cut(s) | 92, 130, 229, 237, 261, 520 |
| Cfr10I | RCCGGY | 1 cut(s) | 406 |
| ClaI | ATCGAT | 1 cut(s) | 12 |
| CseI | GACGC | 2 cut(s) | 119, 624 |
| Csp6I | GTAC | 1 cut(s) | 298 |
| CviAII | CATG | 1 cut(s) | 644 |
| CviJI | RGCY | 6 cut(s) | 30, 47, 116, 339, 481, 491 |
| CviKI_1 | RGCY | 6 cut(s) | 30, 47, 116, 339, 481, 491 |
| CviQI | GTAC | 1 cut(s) | 298 |
| DpnI | GATC | 5 cut(s) | 11, 267, 449, 587, 695 |
| DpnII | GATC | 5 cut(s) | 9, 265, 447, 585, 693 |
| Eam1104I | CTCTTC | 1 cut(s) | 54 |
| EarI | CTCTTC | 1 cut(s) | 54 |
| EciI | GGCGGA | 1 cut(s) | 303 |
| FaeI | CATG | 1 cut(s) | 647 |
| FaiI | YATR | 8 cut(s) | 333, 401, 431, 513, 592, 638, 645, 658 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 105, 137 |
| FaqI | GGGAC | 1 cut(s) | 627 |
| FatI | CATG | 1 cut(s) | 643 |
| FblI | GTMKAC | 2 cut(s) | 69, 672 |
| Fnu4HI | GCNGC | 3 cut(s) | 170, 619, 622 |
| FokI | GGATG | 3 cut(s) | 344, 485, 617 |
| Fsp4HI | GCNGC | 3 cut(s) | 170, 619, 622 |
| FspBI | CTAG | 3 cut(s) | 27, 53, 125 |
| FspI | TGCGCA | 1 cut(s) | 519 |
| GlaI | GCGC | 6 cut(s) | 91, 129, 228, 236, 260, 519 |
| GluI | GCNGC | 3 cut(s) | 170, 619, 622 |
| HaeII | RGCGCY | 2 cut(s) | 93, 238 |
| HaeIII | GGCC | 1 cut(s) | 339 |
| HapII | CCGG | 3 cut(s) | 86, 350, 407 |
| HgaI | GACGC | 2 cut(s) | 119, 624 |
| HhaI | GCGC | 6 cut(s) | 92, 130, 229, 237, 261, 520 |
| Hin1II | CATG | 1 cut(s) | 647 |
| Hin6I | GCGC | 6 cut(s) | 90, 128, 227, 235, 259, 518 |
| HinP1I | GCGC | 6 cut(s) | 90, 128, 227, 235, 259, 518 |
| HincII | GTYRAC | 2 cut(s) | 436, 673 |
| HindII | GTYRAC | 2 cut(s) | 436, 673 |
| HindIII | AAGCTT | 2 cut(s) | 114, 479 |
| HpaII | CCGG | 3 cut(s) | 86, 350, 407 |
| HphI | GGTGA | 3 cut(s) | 68, 397, 509 |
| Hpy166II | GTNNAC | 3 cut(s) | 70, 436, 673 |
| Hpy188I | TCNGA | 3 cut(s) | 163, 270, 693 |
| Hpy188III | TCNNGA | 2 cut(s) | 196, 326 |
| Hpy8I | GTNNAC | 3 cut(s) | 70, 436, 673 |
| Hpy99I | CGWCG | 1 cut(s) | 105 |
| HpyAV | CCTTC | 3 cut(s) | 131, 217, 547 |
| HpyCH4III | ACNGT | 2 cut(s) | 157, 294 |
| HpyCH4IV | ACGT | 1 cut(s) | 103 |
| HpyCH4V | TGCA | 5 cut(s) | 169, 217, 530, 621, 630 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 449, 627 |
| HpySE526I | ACGT | 1 cut(s) | 103 |
| Hsp92II | CATG | 1 cut(s) | 647 |
| HspAI | GCGC | 6 cut(s) | 90, 128, 227, 235, 259, 518 |
| Kzo9I | GATC | 5 cut(s) | 9, 265, 447, 585, 693 |
| LguI | GCTCTTC | 1 cut(s) | 54 |
| Lsp1109I | GCAGC | 3 cut(s) | 181, 605, 633 |
| LweI | GCATC | 2 cut(s) | 195, 639 |
| MaeI | CTAG | 3 cut(s) | 27, 53, 125 |
| MaeII | ACGT | 1 cut(s) | 103 |
| MaeIII | GTNAC | 1 cut(s) | 81 |
| MalI | GATC | 5 cut(s) | 11, 267, 449, 587, 695 |
| MboI | GATC | 5 cut(s) | 9, 265, 447, 585, 693 |
| MboII | GAAGA | 5 cut(s) | 41, 235, 272, 370, 433 |
| MflI | RGATCY | 1 cut(s) | 585 |
| MluCI | AATT | 3 cut(s) | 149, 389, 604 |
| MnlI | CCTC | 2 cut(s) | 574, 671 |
| MroXI | GAANNNNTTC | 1 cut(s) | 149 |
| MspA1I | CMGCKG | 1 cut(s) | 136 |
| MspI | CCGG | 3 cut(s) | 86, 350, 407 |
| MspR9I | CCNGG | 1 cut(s) | 87 |
| MvnI | CGCG | 1 cut(s) | 130 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 449, 627 |
| NciI | CCSGG | 1 cut(s) | 87 |
| NdeII | GATC | 5 cut(s) | 9, 265, 447, 585, 693 |
| NheI | GCTAGC | 1 cut(s) | 26 |
| NlaIII | CATG | 1 cut(s) | 647 |
| NsbI | TGCGCA | 1 cut(s) | 519 |
| NspV | TTCGAA | 1 cut(s) | 143 |
| PciSI | GCTCTTC | 1 cut(s) | 54 |
| PdmI | GAANNNNTTC | 1 cut(s) | 149 |
| PkrI | GCNGC | 3 cut(s) | 171, 620, 623 |
| Ple19I | CGATCG | 2 cut(s) | 12, 450 |
| PstI | CTGCAG | 1 cut(s) | 623 |
| PsuI | RGATCY | 1 cut(s) | 585 |
| PvuI | CGATCG | 2 cut(s) | 12, 450 |
| RsaI | GTAC | 1 cut(s) | 299 |
| RsaNI | GTAC | 1 cut(s) | 298 |
| SalI | GTCGAC | 1 cut(s) | 671 |
| SapI | GCTCTTC | 1 cut(s) | 54 |
| SatI | GCNGC | 3 cut(s) | 170, 619, 622 |
| Sau3AI | GATC | 5 cut(s) | 9, 265, 447, 585, 693 |
| ScrFI | CCNGG | 1 cut(s) | 87 |
| SetI | ASST | 9 cut(s) | 32, 58, 106, 118, 123, 209, 216, 461, 483 |
| SfaNI | GCATC | 2 cut(s) | 195, 639 |
| SfcI | CTRYAG | 2 cut(s) | 429, 619 |
| SfuI | TTCGAA | 1 cut(s) | 143 |
| SgrAI | CRCCGGYG | 1 cut(s) | 406 |
| SmlI | CTYRAG | 1 cut(s) | 111 |
| SmoI | CTYRAG | 1 cut(s) | 111 |
| Sse9I | AATT | 3 cut(s) | 149, 389, 604 |
| SsiI | CCGC | 2 cut(s) | 134, 288 |
| SspMI | CTAG | 3 cut(s) | 27, 53, 125 |
| StyD4I | CCNGG | 1 cut(s) | 85 |
| TaaI | ACNGT | 2 cut(s) | 157, 294 |
| TaiI | ACGT | 1 cut(s) | 106 |
| TaqI | TCGA | 5 cut(s) | 12, 143, 252, 446, 672 |
| TaqII | GACCGA | 1 cut(s) | 304 |
| TasI | AATT | 3 cut(s) | 149, 389, 604 |
| TscAI | CASTG | 2 cut(s) | 311, 499 |
| TseI | GCWGC | 3 cut(s) | 169, 618, 621 |
| TspDTI | ATGAA | 2 cut(s) | 632, 695 |
| TspRI | CASTG | 2 cut(s) | 311, 499 |
| XapI | RAATTY | 1 cut(s) | 604 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 460 |
| XmiI | GTMKAC | 2 cut(s) | 69, 672 |
| XmnI | GAANNNNTTC | 1 cut(s) | 149 |
| XspI | CTAG | 3 cut(s) | 27, 53, 125 |