Rmu_sc0000554.1_g000031

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000554.1
OG0000032
Physical Location & Seq
Reverse (-)
142427 .. 143755
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000554.1_g000031.1.cds

Sequence Viewer

Length: 1329 bp
atggcaacgattgaggaggttgcagcaagctttgcatcgtcgctggctcttcttggcgacgatgtggtggatctctccaagatgccgggtgcggataccaggcgcggctctcaggcctacctccttgcacggcctctcacaacaaagccgtttaaggcacccgatctgcagcgctatttcaaacgcgtatgggttctcaatgctgctttcactgtccaagaaagggcacagaaacgctttgtgatagcgttcgatctgcgcaaggatagaaacaaggtactaaaaggaggtccttggtatttccagcgtgctccagtcgtcatccaagactatgatggcttgaaatctcccactgcaatccagatggatgaactgttcttttgggtgaagattcgtaacataccaccggccttggaggtaaagaacacaatcatgaatgttgcttcggttgccggcaggtttctggaatgggacgacaagcatttcaaggtgtctggggatgttagggttcatgtggcgcatcagatcgctaaacctttcttcctaaccaaaaccctcaaacttgcaccgggagtgattgaggaaatatcctttttctttgaaaaccttcttggccgctgtcgtgattgtggttttattgttcatgagaatggaaattgccaatttacaggaaagaacgctcaccagaactctgacccaaagtcggcagtgcatcggatggaactacctagttccttcgccggttctgcgcaatgcaatttcactggaggtgcattccgctttcaagggattcaaacacctattctacctcctgtggctcgcagcttgtttggctctggtccctccaccaagctgcgtaaacccatggtgcttcgccatactaacctgcagacagctgaggaagcaaataagcaactcgttttaatacctccaacagaacaatctcctttgaagagaggcaggcctagttctccctttacctctccaaagaagatcaagctcatgctagaggagcttagtcttggcagtattagcgcaccggcacctgcaaagaaggttaaacgactgaccaccgacattaggttttctgctaagtcactgggacttgtggagacgccggaagggatgctagtccctgcagaggggatgatgcctcaggaaaatgtctccgagggcccaaccaccaagaagaaaagaggcagacctttagggtcccgaaacaagaaccctccgaagccaaagacctcagtctctgctgaagatgtgctttcctacctccactcggggaagactgctagccctagcttcaagggcaaggaaaagatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

442

Amino Acids

48.93

Weight (kDa)

9.97

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000032)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20531 FvH4_1g22101 FvH4_1g26161 FvH4_2g06802 FvH4_2g07851 FvH4_2g07920 FvH4_2g11481 FvH4_2g14491 FvH4_2g14510 FvH4_3g02671 FvH4_3g10870 FvH4_3g16811 FvH4_3g18871 FvH4_3g20011 FvH4_3g29181 FvH4_3g30101 FvH4_3g33941 FvH4_4g08031 FvH4_4g10192 FvH4_4g20791 FvH4_5g02440 FvH4_5g03261 FvH4_5g15791 FvH4_5g22472 FvH4_5g23680 FvH4_5g26530 FvH4_5g26540 FvH4_5g30241 FvH4_5g32311 FvH4_5g38943 FvH4_6g05152 FvH4_6g10481 FvH4_6g14353 FvH4_6g17850 FvH4_6g19460 FvH4_6g23861 FvH4_6g30881 FvH4_6g31722 FvH4_6g40031 FvH4_6g46031 FvH4_6g49021 FvH4_7g12530 FvH4_7g15960
pyrus_communis pycom09g18450
rosa_chinensis RchiOBHm_Chr1g0341771 RchiOBHm_Chr1g0354791 RchiOBHm_Chr2g0095751 RchiOBHm_Chr5g0030691 RchiOBHm_Chr7g0181741 RchiOBHm_Chr7g0222721 RchiOBHm_Chr7g0243191
rosa_laevigata RLG00000001405 RLG00000001878 RLG00000002053 RLG00000002361 RLG00000003846 RLG00000012639 RLG00000013326 RLG00000014331 RLG00000017340 RLG00000017548 RLG00000018177 RLG00000018372 RLG00000019006 RLG00000019406 RLG00000019522 RLG00000019922 RLG00000020489 RLG00000022399 RLG00000023433 RLG00000027372 RLG00000028576 RLG00000028590 RLG00000028947 RLG00000032552 RLG00000033183 RLG00000033245 RLG00000033730 RLG00000034443 RLG00000034772 RLG00000036008
rosa_multiflora Rmu_co8029972.1_g000001 Rmu_co8044978.1_g000001 Rmu_co8338363.1_g000001 Rmu_co8426431.1_g000002 Rmu_co8457575.1_g000001 Rmu_sc0000010.1_g000025 Rmu_sc0000197.1_g000018 Rmu_sc0000220.1_g000009 Rmu_sc0000221.1_g000012 Rmu_sc0000258.1_g000002 Rmu_sc0000284.1_g000015 Rmu_sc0000303.1_g000021 Rmu_sc0000309.1_g000015 Rmu_sc0000317.1_g000017 Rmu_sc0000355.1_g000003 Rmu_sc0000376.1_g000035 Rmu_sc0000420.1_g000009 Rmu_sc0000493.1_g000019 Rmu_sc0000498.1_g000044 Rmu_sc0000540.1_g000015 Rmu_sc0000554.1_g000031 Rmu_sc0000577.1_g000004 Rmu_sc0000647.1_g000007 Rmu_sc0000703.1_g000002 Rmu_sc0000776.1_g000025 Rmu_sc0000924.1_g000044 Rmu_sc0000940.1_g000034 Rmu_sc0000940.1_g000036 Rmu_sc0000990.1_g000014 Rmu_sc0001004.1_g000018 Rmu_sc0001027.1_g000014 Rmu_sc0001059.1_g000004 Rmu_sc0001089.1_g000021 Rmu_sc0001118.1_g000013 Rmu_sc0001141.1_g000024 Rmu_sc0001154.1_g000002 Rmu_sc0001179.1_g000023 Rmu_sc0001230.1_g000014 Rmu_sc0001298.1_g000042 Rmu_sc0001306.1_g000030 Rmu_sc0001306.1_g000036 Rmu_sc0001341.1_g000007 Rmu_sc0001386.1_g000013 Rmu_sc0001461.1_g000019 Rmu_sc0001461.1_g000047 Rmu_sc0001476.1_g000013 Rmu_sc0001516.1_g000032 Rmu_sc0001780.1_g000007 Rmu_sc0001793.1_g000005 Rmu_sc0001911.1_g000013 Rmu_sc0001962.1_g000011 Rmu_sc0001986.1_g000004 Rmu_sc0002061.1_g000021 Rmu_sc0002119.1_g000024 Rmu_sc0002194.1_g000021 Rmu_sc0002284.1_g000019 Rmu_sc0002316.1_g000014 Rmu_sc0002322.1_g000006 Rmu_sc0002351.1_g000107 Rmu_sc0002387.1_g000008 Rmu_sc0002389.1_g000029 Rmu_sc0002507.1_g000001 Rmu_sc0002589.1_g000038 Rmu_sc0002638.1_g000041 Rmu_sc0002656.1_g000007 Rmu_sc0002882.1_g000030 Rmu_sc0002927.1_g000034 Rmu_sc0003024.1_g000020 Rmu_sc0003032.1_g000027 Rmu_sc0003069.1_g000025 Rmu_sc0003268.1_g000002 Rmu_sc0003296.1_g000007 Rmu_sc0003363.1_g000073 Rmu_sc0003527.1_g000017 Rmu_sc0003638.1_g000007 Rmu_sc0003669.1_g000007 Rmu_sc0003882.1_g000021 Rmu_sc0003941.1_g000004 Rmu_sc0003979.1_g000007 Rmu_sc0003983.1_g000007 Rmu_sc0003989.1_g000017 Rmu_sc0004016.1_g000003 Rmu_sc0004020.1_g000025 Rmu_sc0004094.1_g000016 Rmu_sc0004135.1_g000002 Rmu_sc0004154.1_g000014 Rmu_sc0004316.1_g000002 Rmu_sc0004316.1_g000015 Rmu_sc0004321.1_g000013 Rmu_sc0004467.1_g000005 Rmu_sc0004517.1_g000007 Rmu_sc0004642.1_g000012 Rmu_sc0004729.1_g000024 Rmu_sc0004757.1_g000018 Rmu_sc0004788.1_g000003 Rmu_sc0004835.1_g000026 Rmu_sc0004889.1_g000019 Rmu_sc0004991.1_g000009 Rmu_sc0005045.1_g000004 Rmu_sc0005079.1_g000004 Rmu_sc0005083.1_g000008 Rmu_sc0005170.1_g000002 Rmu_sc0005190.1_g000009 Rmu_sc0005217.1_g000010 Rmu_sc0005234.1_g000011 Rmu_sc0005608.1_g000016 Rmu_sc0005802.1_g000029 Rmu_sc0005810.1_g000006 Rmu_sc0005904.1_g000006 Rmu_sc0005967.1_g000012 Rmu_sc0006028.1_g000027 Rmu_sc0006059.1_g000040 Rmu_sc0006423.1_g000002 Rmu_sc0006467.1_g000001 Rmu_sc0006470.1_g000004 Rmu_sc0006598.1_g000003 Rmu_sc0006599.1_g000004 Rmu_sc0006632.1_g000021 Rmu_sc0006707.1_g000008 Rmu_sc0006791.1_g000008 Rmu_sc0006835.1_g000016 Rmu_sc0007100.1_g000002 Rmu_sc0007115.1_g000009 Rmu_sc0007362.1_g000012 Rmu_sc0007461.1_g000004 Rmu_sc0007474.1_g000001 Rmu_sc0007681.1_g000011 Rmu_sc0007697.1_g000003 Rmu_sc0007704.1_g000001 Rmu_sc0007722.1_g000016 Rmu_sc0007843.1_g000001 Rmu_sc0007856.1_g000009 Rmu_sc0008328.1_g000007 Rmu_sc0008780.1_g000005 Rmu_sc0009185.1_g000011 Rmu_sc0009599.1_g000021 Rmu_sc0009881.1_g000002 Rmu_sc0009891.1_g000002 Rmu_sc0010357.1_g000003 Rmu_sc0010781.1_g000005 Rmu_sc0011133.1_g000005 Rmu_sc0012334.1_g000001 Rmu_sc0012569.1_g000015 Rmu_sc0012984.1_g000001 Rmu_sc0013508.1_g000001 Rmu_sc0013550.1_g000005 Rmu_sc0013730.1_g000001 Rmu_sc0013945.1_g000001 Rmu_sc0013945.1_g000003 Rmu_sc0014005.1_g000005 Rmu_sc0014111.1_g000009 Rmu_sc0014111.1_g000010 Rmu_sc0014203.1_g000025 Rmu_sc0014839.1_g000002 Rmu_sc0015410.1_g000001 Rmu_sc0015513.1_g000003 Rmu_sc0015791.1_g000008 Rmu_sc0016657.1_g000004 Rmu_sc0017187.1_g000002 Rmu_sc0017400.1_g000001 Rmu_sc0017895.1_g000006 Rmu_sc0018221.1_g000008 Rmu_sc0018825.1_g000002 Rmu_sc0019047.1_g000001 Rmu_sc0019077.1_g000001 Rmu_sc0019171.1_g000001 Rmu_sc0019299.1_g000002 Rmu_sc0020342.1_g000008 Rmu_sc0020688.1_g000002 Rmu_sc0020688.1_g000003 Rmu_sc0021871.1_g000012 Rmu_sc0022925.1_g000001 Rmu_sc0023965.1_g000005 Rmu_sc0024968.1_g000001 Rmu_sc0024969.1_g000001 Rmu_sc0025035.1_g000002 Rmu_sc0025167.1_g000005 Rmu_sc0025567.1_g000001 Rmu_sc0026096.1_g000001 Rmu_sc0026586.1_g000001 Rmu_sc0028358.1_g000002 Rmu_sc0032171.1_g000001 Rmu_sc0034632.1_g000001 Rmu_sc0034633.1_g000001 Rmu_sc0035481.1_g000001 Rmu_sc0036303.1_g000001 Rmu_sc0039774.1_g000001 Rmu_sc0040023.1_g000002 Rmu_sc0040790.1_g000001 Rmu_sc0041574.1_g000001 Rmu_sc0042768.1_g000003 Rmu_ssc0000038.1_g000016 Rmu_ssc0000062.1_g000035 Rmu_ssc0000083.1_g000009 Rmu_ssc0000093.1_g000006 Rmu_ssc0000112.1_g000023 Rmu_ssc0000155.1_g000007 Rmu_ssc0000171.1_g000017 Rmu_ssc0000196.1_g000017 Rmu_ssc0000257.1_g000027 Rmu_ssc0000323.1_g000023 Rmu_ssc0000440.1_g000011 Rmu_ssc0000454.1_g000021 Rmu_ssc0000473.1_g000011
rosa_roxburghii Rroxscaffold_1G00014010 Rroxscaffold_1G00039470 Rroxscaffold_1G00045350 Rroxscaffold_2G00082440 Rroxscaffold_2G00096630 Rroxscaffold_2G00100560 Rroxscaffold_2G00102600 Rroxscaffold_2G00117720 Rroxscaffold_2G00120390 Rroxscaffold_2G00126010 Rroxscaffold_3G00220680 Rroxscaffold_3G00241760 Rroxscaffold_4G00309670 Rroxscaffold_4G00312380 Rroxscaffold_5G00339950 Rroxscaffold_5G00361980 Rroxscaffold_5G00370500 Rroxscaffold_5G00376480 Rroxscaffold_5G00384070 Rroxscaffold_6G00393690 Rroxscaffold_6G00396520 Rroxscaffold_6G00396850 Rroxscaffold_6G00404790 Rroxscaffold_7G00177690 Rroxscaffold_7G00178170 Rroxscaffold_7G00194330 Rroxscaffold_7G00197090 Rroxscaffold_9G00437910
rosa_rugosa Rorug01G0010100 Rorug01G0035300 Rorug01G0038600 Rorug01G0038700 Rorug01G0050300 Rorug01G0143800.1 Rorug01G0211700 Rorug01G0266600 Rorug01G0268800 Rorug01G0301200 Rorug02G0139800 Rorug02G0247100 Rorug02G0247100 Rorug02G0276800 Rorug02G0283300 Rorug02G0289800 Rorug02G0326700 Rorug02G0368100 Rorug02G0427000 Rorug02G0439100 Rorug02G0611200 Rorug02G0626600 Rorug03G0049100 Rorug03G0108000 Rorug03G0118600 Rorug03G0174300.1 Rorug03G0182300 Rorug03G0189800 Rorug03G0207000 Rorug03G0220700 Rorug03G0229400 Rorug03G0253700 Rorug03G0276500 Rorug03G0283300.1 Rorug03G0283500 Rorug03G0283600 Rorug03G0299600 Rorug04G0052200 Rorug04G0052300 Rorug04G0115800 Rorug04G0159700 Rorug04G0170900 Rorug04G0178100 Rorug04G0250800 Rorug04G0317200 Rorug04G0409500 Rorug05G0022500 Rorug05G0134900 Rorug05G0144800 Rorug05G0158200 Rorug05G0168300 Rorug05G0168400 Rorug05G0168600 Rorug05G0229800 Rorug05G0259100 Rorug05G0285700 Rorug05G0294600 Rorug05G0306400 Rorug05G0335300 Rorug05G0390100 Rorug05G0392900 Rorug05G0407100 Rorug05G0416600 Rorug05G0536900 Rorug05G0550300 Rorug06G0040900 Rorug06G0042800 Rorug06G0093000 Rorug06G0110700 Rorug06G0115600 Rorug06G0205700 Rorug07G0016900.1 Rorug07G0017000 Rorug07G0095200 Rorug07G0106400 Rorug07G0116400 Rorug07G0127300 Rorug07G0151100 Rorug07G0151200 Rorug07G0178200 Rorug07G0224300 Rorug07G0224400 Rorug07G0226400 Rorug07G0258200 Rorug07G0328000 RorugPtG0002700.1
rosa_samantha Rh1BG231600 Rh1BG235500 Rh1DG259300 Rh2AG044200 Rh2AG095600 Rh2AG164800 Rh2AG361400 Rh2AG370600 Rh2AG487800 Rh2AG620400 Rh2BG171900 Rh2BG244600 Rh2BG500300 Rh2CG189500 Rh2CG317600 Rh2CG374400 Rh2CG474300 Rh2DG170300 Rh2DG374800 Rh2DG511500 Rh3AG273400 Rh3AG331300 Rh3CG203900 Rh3CG222200 Rh3CG253800 Rh3CG269900 Rh3DG073800 Rh3DG208100 Rh3DG224000 Rh3DG265900 Rh4AG217200 Rh4BG076000 Rh4BG113200 Rh4BG240700 Rh4BG414300 Rh4CG266600 Rh4CG307600 Rh5BG088500 Rh5BG469000 Rh5CG284400 Rh5CG491200 Rh5CG557400 Rh5DG399000 Rh6AG457400 Rh6BG339800 Rh6BG443700 Rh6CG115400 Rh6CG471500 Rh6DG390100 Rh6DG457900 Rh7AG372100 Rh7AG429800 Rh7AG484600 Rh7BG176400 Rh7BG233900 Rh7BG244400 Rh7BG279800 Rh7BG285100 Rh7CG172200 Rh7CG390500 Rh7CG502600 Rh7CG518200 Rh7DG252500 Rh7DG294200 Rh7DG376400 Rh7DG390100
rosa_wichuraiana Rw0G001650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1054
Acc16I TGCGCA 2 cut(s) 260, 750
Acc36I ACCTGC 3 cut(s) 447, 894, 1054
AccB1I GGYRCC 2 cut(s) 157, 1042
AccII CGCG 2 cut(s) 105, 186
AciI CCGC 4 cut(s) 92, 105, 616, 778
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 1278
AcyI GRCGYC 1 cut(s) 1115
AfaI GTAC 1 cut(s) 279
AfeI AGCGCT 1 cut(s) 173
AfiI CCNNNNNNNGG 6 cut(s) 223, 703, 1080, 1141, 1142, 1282
AflIII ACRYGT 1 cut(s) 184
AgsI TTSAA 8 cut(s) 181, 343, 487, 602, 785, 794, 952, 1309
AhdI GACNNNNNGTC 1 cut(s) 700
AjnI CCWGG 1 cut(s) 98
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
AloI GAACNNNNNNTCC 2 cut(s) 359, 391
AluBI AGCT 7 cut(s) 30, 825, 853, 896, 1000, 1015, 1305
AluI AGCT 7 cut(s) 30, 825, 853, 896, 1000, 1015, 1305
Alw21I GWGCWC 1 cut(s) 313
Alw26I GTCTC 3 cut(s) 1106, 1171, 1255
AlwI GGATC 1 cut(s) 78
AlwNI CAGNNNCTG 1 cut(s) 1253
Ama87I CYCGRG 1 cut(s) 1282
Aor51HI AGCGCT 1 cut(s) 173
AoxI GGCC 6 cut(s) 114, 131, 408, 613, 962, 1174
ApaI GGGCCC 1 cut(s) 1178
ApeKI GCWGC 5 cut(s) 23, 169, 203, 822, 853
Asp700I GAANNNNTTC 1 cut(s) 606
AspLEI GCGC 6 cut(s) 105, 174, 261, 520, 751, 1037
AspS9I GGNCC 5 cut(s) 290, 839, 1174, 1175, 1212
AsuC2I CCSGG 2 cut(s) 87, 570
AsuHPI GGTGA 2 cut(s) 397, 674
AsuNHI GCTAGC 1 cut(s) 1295
AvaI CYCGRG 1 cut(s) 1282
AvaII GGWCC 3 cut(s) 290, 839, 1212
AxyI CCTNAGG 1 cut(s) 1155
BaeGI GKGCMC 2 cut(s) 229, 1178
BanI GGYRCC 2 cut(s) 157, 1042
BanII GRGCYC 1 cut(s) 1178
BbsI GAAGAC 1 cut(s) 1295
Bbv12I GWGCWC 1 cut(s) 313
BbvCI CCTCAGC 1 cut(s) 897
BbvI GCAGC 5 cut(s) 35, 181, 190, 834, 840
BccI CCATC 3 cut(s) 329, 358, 712
BceAI ACGGC 2 cut(s) 133, 146
BciT130I CCWGG 1 cut(s) 100
BciVI GTATCC 1 cut(s) 88
BcnI CCSGG 2 cut(s) 87, 570
BcoDI GTCTC 3 cut(s) 1106, 1171, 1255
BfaI CTAG 6 cut(s) 729, 966, 1007, 1130, 1296, 1302
BfmI CTRYAG 3 cut(s) 167, 887, 1137
BfoI RGCGCY 1 cut(s) 175
BfuAI ACCTGC 3 cut(s) 447, 894, 1054
BfuI GTATCC 1 cut(s) 88
BisI GCNGC 7 cut(s) 24, 106, 170, 204, 616, 823, 854
BlsI GCNGC 7 cut(s) 25, 107, 171, 205, 617, 824, 855
Bme1390I CCNGG 3 cut(s) 87, 100, 570
Bme18I GGWCC 3 cut(s) 290, 839, 1212
BmeRI GACNNNNNGTC 1 cut(s) 700
BmeT110I CYCGRG 1 cut(s) 1282
BmgT120I GGNCC 5 cut(s) 290, 839, 1174, 1175, 1212
BmiI GGNNCC 6 cut(s) 159, 841, 1044, 1176, 1213, 1214
BmrFI CCNGG 3 cut(s) 87, 100, 570
BmrI ACTGGG 1 cut(s) 1109
BmsI GCATC 6 cut(s) 44, 72, 529, 721, 1116, 1140
BmtI GCTAGC 1 cut(s) 1299
BmuI ACTGGG 1 cut(s) 1109
BoxI GACNNNNGTC 1 cut(s) 1247
BpiI GAAGAC 1 cut(s) 1295
BpmI CTGGAG 2 cut(s) 297, 786
Bpu10I CCTNAGC 1 cut(s) 897
BpuMI CCSGG 2 cut(s) 87, 570
BsaHI GRCGYC 1 cut(s) 1115
BsaJI CCNNGG 4 cut(s) 293, 411, 864, 1170
Bsc4I CCNNNNNNNGG 6 cut(s) 223, 703, 1080, 1141, 1142, 1282
Bse118I RCCGGY 4 cut(s) 406, 452, 740, 1039
Bse1I ACTGG 3 cut(s) 314, 769, 1104
Bse21I CCTNAGG 1 cut(s) 1155
Bse3DI GCAATG 1 cut(s) 758
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 4 cut(s) 293, 411, 864, 1170
BseGI GGATG 6 cut(s) 321, 373, 505, 723, 1131, 1152
BseLI CCNNNNNNNGG 6 cut(s) 223, 703, 1080, 1141, 1142, 1282
BseMI GCAATG 1 cut(s) 758
BseMII CTCAG 4 cut(s) 125, 888, 1169, 1260
BseNI ACTGG 3 cut(s) 314, 769, 1104
BseRI GAGGAG 2 cut(s) 29, 1025
BseSI GKGCMC 2 cut(s) 229, 1178
BseXI GCAGC 5 cut(s) 35, 181, 190, 834, 840
Bsh1236I CGCG 2 cut(s) 105, 186
BshFI GGCC 6 cut(s) 116, 133, 410, 615, 964, 1176
BshNI GGYRCC 2 cut(s) 157, 1042
BsiHKAI GWGCWC 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 1282
BsiSI CCGG 7 cut(s) 86, 407, 453, 569, 741, 1040, 1118
BslFI GGGAC 5 cut(s) 485, 825, 1116, 1118, 1198
BslI CCNNNNNNNGG 6 cut(s) 223, 703, 1080, 1141, 1142, 1282
BsmAI GTCTC 3 cut(s) 1106, 1171, 1255
BsmBI CGTCTC 1 cut(s) 1106
BsmFI GGGAC 5 cut(s) 485, 825, 1116, 1118, 1198
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 6 cut(s) 116, 133, 410, 615, 964, 1176
BsoBI CYCGRG 1 cut(s) 1282
Bsp120I GGGCCC 1 cut(s) 1174
Bsp1286I GDGCHC 3 cut(s) 229, 313, 1178
Bsp143I GATC 5 cut(s) 70, 163, 253, 525, 993
Bsp19I CCATGG 1 cut(s) 864
BspACI CCGC 4 cut(s) 92, 105, 616, 778
BspANI GGCC 6 cut(s) 116, 133, 410, 615, 964, 1176
BspCNI CTCAG 4 cut(s) 124, 889, 1168, 1259
BspFNI CGCG 2 cut(s) 105, 186
BspHI TCATGA 2 cut(s) 432, 643
BspLI GGNNCC 6 cut(s) 159, 841, 1044, 1176, 1213, 1214
BspMAI CTGCAG 3 cut(s) 171, 891, 1141
BspMI ACCTGC 3 cut(s) 447, 894, 1054
BspOI GCTAGC 1 cut(s) 1299
BspPI GGATC 1 cut(s) 78
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 2 cut(s) 157, 1042
BsrDI GCAATG 1 cut(s) 758
BsrFI RCCGGY 4 cut(s) 406, 452, 740, 1039
BsrI ACTGG 3 cut(s) 314, 769, 1104
BssAI RCCGGY 4 cut(s) 406, 452, 740, 1039
BssECI CCNNGG 4 cut(s) 293, 411, 864, 1170
BssMI GATC 5 cut(s) 70, 163, 253, 525, 993
BssNI GRCGYC 1 cut(s) 1115
BssT1I CCWWGG 3 cut(s) 293, 411, 864
Bst2UI CCWGG 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 214, 375
Bst6I CTCTTC 2 cut(s) 54, 947
BstACI GRCGYC 1 cut(s) 1115
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 7 cut(s) 28, 45, 309, 454, 820, 962, 1297
BstDEI CTNAG 6 cut(s) 111, 897, 1016, 1092, 1155, 1246
BstDSI CCRYGG 1 cut(s) 864
BstF5I GGATG 6 cut(s) 321, 373, 505, 723, 1131, 1152
BstFNI CGCG 2 cut(s) 105, 186
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 6 cut(s) 105, 174, 261, 520, 751, 1037
BstKTI GATC 5 cut(s) 73, 166, 256, 528, 996
BstMAI GTCTC 3 cut(s) 1106, 1171, 1255
BstMBI GATC 5 cut(s) 70, 163, 253, 525, 993
BstMWI GCNNNNNNNGC 8 cut(s) 32, 449, 746, 831, 902, 1012, 1032, 1311
BstNI CCWGG 1 cut(s) 100
BstPAI GACNNNNGTC 1 cut(s) 1247
BstSCI CCNGG 3 cut(s) 85, 98, 568
BstSFI CTRYAG 3 cut(s) 167, 887, 1137
BstSLI GKGCMC 2 cut(s) 229, 1178
BstUI CGCG 2 cut(s) 105, 186
BstV1I GCAGC 5 cut(s) 35, 181, 190, 834, 840
BstV2I GAAGAC 1 cut(s) 1295
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 1155
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 6 cut(s) 116, 133, 410, 615, 964, 1176
BtgI CCRYGG 1 cut(s) 864
BtsCI GGATG 6 cut(s) 321, 373, 505, 723, 1131, 1152
BtsI GCAGTG 2 cut(s) 351, 714
BtsIMutI CAGTG 5 cut(s) 210, 351, 714, 762, 1097
BveI ACCTGC 3 cut(s) 447, 894, 1054
Cac8I GCNNGC 7 cut(s) 28, 45, 309, 454, 820, 962, 1297
CaiI CAGNNNCTG 1 cut(s) 1253
CciI TCATGA 2 cut(s) 432, 643
CfoI GCGC 6 cut(s) 105, 174, 261, 520, 751, 1037
Cfr10I RCCGGY 4 cut(s) 406, 452, 740, 1039
Cfr13I GGNCC 5 cut(s) 290, 839, 1174, 1175, 1212
CseI GACGC 1 cut(s) 1123
Csp6I GTAC 1 cut(s) 278
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 5 cut(s) 433, 512, 644, 865, 1003
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 6 cut(s) 111, 897, 1016, 1092, 1155, 1246
DpnI GATC 5 cut(s) 72, 165, 255, 527, 995
DpnII GATC 5 cut(s) 70, 163, 253, 525, 993
DriI GACNNNNNGTC 1 cut(s) 700
EaeI YGGCCR 1 cut(s) 613
Eam1104I CTCTTC 2 cut(s) 54, 947
Eam1105I GACNNNNNGTC 1 cut(s) 700
EarI CTCTTC 2 cut(s) 54, 947
Eco130I CCWWGG 3 cut(s) 293, 411, 864
Eco147I AGGCCT 2 cut(s) 116, 964
Eco24I GRGCYC 1 cut(s) 1178
Eco47I GGWCC 3 cut(s) 290, 839, 1212
Eco47III AGCGCT 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 1278
Eco81I CCTNAGG 1 cut(s) 1155
Eco88I CYCGRG 1 cut(s) 1282
EcoO109I RGGNCCY 3 cut(s) 290, 1174, 1212
EcoRII CCWGG 1 cut(s) 98
EcoT14I CCWWGG 3 cut(s) 293, 411, 864
EcoT38I GRGCYC 1 cut(s) 1178
ErhI CCWWGG 3 cut(s) 293, 411, 864
Esp3I CGTCTC 1 cut(s) 1106
FaeI CATG 5 cut(s) 436, 515, 647, 868, 1006
FaiI YATR 9 cut(s) 190, 333, 401, 434, 513, 645, 866, 879, 1004
FalI AAGNNNNNCTT 2 cut(s) 1251, 1283
FaqI GGGAC 5 cut(s) 485, 825, 1116, 1118, 1198
FatI CATG 5 cut(s) 432, 511, 643, 864, 1002
Fnu4HI GCNGC 7 cut(s) 24, 106, 170, 204, 616, 823, 854
FokI GGATG 6 cut(s) 308, 380, 512, 730, 1138, 1159
FriOI GRGCYC 1 cut(s) 1178
Fsp4HI GCNGC 7 cut(s) 24, 106, 170, 204, 616, 823, 854
FspBI CTAG 6 cut(s) 729, 966, 1007, 1130, 1296, 1302
FspI TGCGCA 2 cut(s) 260, 750
GlaI GCGC 6 cut(s) 104, 173, 260, 519, 750, 1036
GluI GCNGC 7 cut(s) 24, 106, 170, 204, 616, 823, 854
GsuI CTGGAG 2 cut(s) 297, 786
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 6 cut(s) 116, 133, 410, 615, 964, 1176
HapII CCGG 7 cut(s) 86, 407, 453, 569, 741, 1040, 1118
HgaI GACGC 1 cut(s) 1123
HhaI GCGC 6 cut(s) 105, 174, 261, 520, 751, 1037
Hin1I GRCGYC 1 cut(s) 1115
Hin1II CATG 5 cut(s) 436, 515, 647, 868, 1006
Hin6I GCGC 6 cut(s) 103, 172, 259, 518, 749, 1035
HinP1I GCGC 6 cut(s) 103, 172, 259, 518, 749, 1035
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 2 cut(s) 391, 790
HpaII CCGG 7 cut(s) 86, 407, 453, 569, 741, 1040, 1118
HphI GGTGA 2 cut(s) 397, 674
Hpy166II GTNNAC 1 cut(s) 860
Hpy188I TCNGA 5 cut(s) 525, 694, 717, 1171, 1233
Hpy188III TCNNGA 7 cut(s) 361, 433, 464, 623, 644, 1157, 1215
Hpy8I GTNNAC 1 cut(s) 860
Hpy99I CGWCG 2 cut(s) 43, 62
HpyAV CCTTC 4 cut(s) 617, 745, 1048, 1115
HpyCH4III ACNGT 2 cut(s) 214, 375
HpyF10VI GCNNNNNNNGC 8 cut(s) 32, 449, 746, 831, 902, 1012, 1032, 1311
HpyF3I CTNAG 6 cut(s) 111, 897, 1016, 1092, 1155, 1246
Hsp92I GRCGYC 1 cut(s) 1115
Hsp92II CATG 5 cut(s) 436, 515, 647, 868, 1006
HspAI GCGC 6 cut(s) 103, 172, 259, 518, 749, 1035
KflI GGGWCCC 1 cut(s) 1212
KroI GCCGGC 1 cut(s) 452
KroNI GCCGGC 1 cut(s) 454
Kzo9I GATC 5 cut(s) 70, 163, 253, 525, 993
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 2 cut(s) 316, 1012
Lsp1109I GCAGC 5 cut(s) 35, 181, 190, 834, 840
LweI GCATC 6 cut(s) 44, 72, 529, 721, 1116, 1140
MaeI CTAG 6 cut(s) 729, 966, 1007, 1130, 1296, 1302
MaeIII GTNAC 2 cut(s) 395, 1095
MalI GATC 5 cut(s) 72, 165, 255, 527, 995
MboI GATC 5 cut(s) 70, 163, 253, 525, 993
MboII GAAGA 8 cut(s) 41, 400, 532, 964, 1003, 1201, 1271, 1300
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 3 cut(s) 229, 313, 1178
MluCI AATT 3 cut(s) 655, 662, 757
MluI ACGCGT 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 956
MroNI GCCGGC 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 606
MseI TTAA 3 cut(s) 153, 923, 1059
MslI CAYNNNNRTG 2 cut(s) 431, 648
MspA1I CMGCKG 2 cut(s) 618, 896
MspI CCGG 7 cut(s) 86, 407, 453, 569, 741, 1040, 1118
MspR9I CCNGG 3 cut(s) 87, 100, 570
Mva1269I GAATGC 1 cut(s) 773
MvaI CCWGG 1 cut(s) 100
MvnI CGCG 2 cut(s) 105, 186
MwoI GCNNNNNNNGC 8 cut(s) 32, 449, 746, 831, 902, 1012, 1032, 1311
NaeI GCCGGC 1 cut(s) 454
NciI CCSGG 2 cut(s) 87, 570
NcoI CCATGG 1 cut(s) 864
NdeII GATC 5 cut(s) 70, 163, 253, 525, 993
NgoMIV GCCGGC 1 cut(s) 452
NheI GCTAGC 1 cut(s) 1295
NlaIII CATG 5 cut(s) 436, 515, 647, 868, 1006
NlaIV GGNNCC 6 cut(s) 159, 841, 1044, 1176, 1213, 1214
NmuCI GTSAC 1 cut(s) 1095
NsbI TGCGCA 2 cut(s) 260, 750
PagI TCATGA 2 cut(s) 432, 643
PaqCI CACCTGC 1 cut(s) 1054
PceI AGGCCT 2 cut(s) 116, 964
PciSI GCTCTTC 1 cut(s) 54
PctI GAATGC 1 cut(s) 773
PdiI GCCGGC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 606
PfeI GAWTC 2 cut(s) 391, 790
PkrI GCNGC 7 cut(s) 25, 107, 171, 205, 617, 824, 855
PpuMI RGGWCCY 2 cut(s) 290, 1212
PshAI GACNNNNGTC 1 cut(s) 1247
Psp5II RGGWCCY 2 cut(s) 290, 1212
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 6 cut(s) 159, 841, 1044, 1176, 1213, 1214
PspOMI GGGCCC 1 cut(s) 1174
PspPI GGNCC 5 cut(s) 290, 839, 1174, 1175, 1212
PspPPI RGGWCCY 2 cut(s) 290, 1212
PstI CTGCAG 3 cut(s) 171, 891, 1141
PstNI CAGNNNCTG 1 cut(s) 1253
PsuI RGATCY 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
RseI CAYNNNNRTG 2 cut(s) 431, 648
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 153, 923, 1059
SatI GCNGC 7 cut(s) 24, 106, 170, 204, 616, 823, 854
Sau3AI GATC 5 cut(s) 70, 163, 253, 525, 993
Sau96I GGNCC 5 cut(s) 290, 839, 1174, 1175, 1212
ScrFI CCNGG 3 cut(s) 87, 100, 570
SduI GDGCHC 3 cut(s) 229, 313, 1178
SfaNI GCATC 6 cut(s) 44, 72, 529, 721, 1116, 1140
SfcI CTRYAG 3 cut(s) 167, 887, 1137
SinI GGWCC 3 cut(s) 290, 839, 1212
SmiMI CAYNNNNRTG 2 cut(s) 431, 648
Sse9I AATT 3 cut(s) 655, 662, 757
SseBI AGGCCT 2 cut(s) 116, 964
SsiI CCGC 4 cut(s) 92, 105, 616, 778
SspMI CTAG 6 cut(s) 729, 966, 1007, 1130, 1296, 1302
StuI AGGCCT 2 cut(s) 116, 964
StyD4I CCNGG 3 cut(s) 85, 98, 568
StyI CCWWGG 3 cut(s) 293, 411, 864
TaaI ACNGT 2 cut(s) 214, 375
TaqI TCGA 1 cut(s) 252
TasI AATT 3 cut(s) 655, 662, 757
TauI GCSGC 2 cut(s) 108, 618
TfiI GAWTC 2 cut(s) 391, 790
Tru1I TTAA 3 cut(s) 153, 923, 1059
Tru9I TTAA 3 cut(s) 153, 923, 1059
TscAI CASTG 5 cut(s) 217, 358, 714, 769, 1104
TseFI GTSAC 1 cut(s) 1095
TseI GCWGC 5 cut(s) 23, 169, 203, 822, 853
Tsp45I GTSAC 1 cut(s) 1095
TspDTI ATGAA 4 cut(s) 384, 449, 500, 632
TspRI CASTG 5 cut(s) 217, 358, 714, 769, 1104
VpaK11BI GGWCC 3 cut(s) 290, 839, 1212
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 606
XspI CTAG 6 cut(s) 729, 966, 1007, 1130, 1296, 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.