ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 44 |
| AccII | CGCG | 1 cut(s) | 516 |
| AccIII | TCCGGA | 2 cut(s) | 183, 390 |
| AciI | CCGC | 2 cut(s) | 20, 407 |
| AclWI | GGATC | 3 cut(s) | 100, 276, 401 |
| AcoI | YGGCCR | 1 cut(s) | 229 |
| AcsI | RAATTY | 1 cut(s) | 461 |
| AcuI | CTGAAG | 1 cut(s) | 517 |
| AcvI | CACGTG | 1 cut(s) | 227 |
| AcyI | GRCGYC | 1 cut(s) | 41 |
| AfaI | GTAC | 1 cut(s) | 302 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 52 |
| AgsI | TTSAA | 2 cut(s) | 214, 364 |
| AjnI | CCWGG | 3 cut(s) | 45, 219, 296 |
| AluBI | AGCT | 2 cut(s) | 33, 484 |
| AluI | AGCT | 2 cut(s) | 33, 484 |
| Alw21I | GWGCWC | 1 cut(s) | 316 |
| Alw26I | GTCTC | 1 cut(s) | 523 |
| Alw44I | GTGCAC | 1 cut(s) | 312 |
| AlwI | GGATC | 3 cut(s) | 100, 276, 401 |
| Aor13HI | TCCGGA | 2 cut(s) | 183, 390 |
| AoxI | GGCC | 2 cut(s) | 3, 229 |
| ApaLI | GTGCAC | 1 cut(s) | 312 |
| ApeKI | GCWGC | 1 cut(s) | 124 |
| ApoI | RAATTY | 1 cut(s) | 461 |
| AspLEI | GCGC | 1 cut(s) | 108 |
| AspS9I | GGNCC | 1 cut(s) | 293 |
| AsuC2I | CCSGG | 1 cut(s) | 354 |
| AsuHPI | GGTGA | 2 cut(s) | 34, 433 |
| AsuNHI | GCTAGC | 1 cut(s) | 127 |
| AvaII | GGWCC | 1 cut(s) | 293 |
| BaeGI | GKGCMC | 1 cut(s) | 316 |
| BalI | TGGCCA | 1 cut(s) | 231 |
| BbrPI | CACGTG | 1 cut(s) | 227 |
| Bbv12I | GWGCWC | 1 cut(s) | 316 |
| BbvI | GCAGC | 1 cut(s) | 111 |
| BccI | CCATC | 3 cut(s) | 197, 332, 361 |
| BceAI | ACGGC | 1 cut(s) | 159 |
| BciT130I | CCWGG | 3 cut(s) | 47, 221, 298 |
| BcnI | CCSGG | 1 cut(s) | 354 |
| BcoDI | GTCTC | 1 cut(s) | 523 |
| BfaI | CTAG | 1 cut(s) | 128 |
| BglII | AGATCT | 1 cut(s) | 528 |
| BisI | GCNGC | 1 cut(s) | 125 |
| BlsI | GCNGC | 1 cut(s) | 126 |
| Bme1390I | CCNGG | 4 cut(s) | 47, 221, 298, 354 |
| Bme18I | GGWCC | 1 cut(s) | 293 |
| BmgT120I | GGNCC | 1 cut(s) | 293 |
| BmiI | GGNNCC | 2 cut(s) | 295, 351 |
| BmrFI | CCNGG | 4 cut(s) | 47, 221, 298, 354 |
| BmsI | GCATC | 3 cut(s) | 7, 117, 455 |
| BmtI | GCTAGC | 1 cut(s) | 131 |
| BpmI | CTGGAG | 1 cut(s) | 155 |
| BpuMI | CCSGG | 1 cut(s) | 354 |
| BsaAI | YACGTR | 1 cut(s) | 227 |
| BsaHI | GRCGYC | 1 cut(s) | 41 |
| BsaJI | CCNNGG | 3 cut(s) | 45, 296, 450 |
| BsaWI | WCCGGW | 2 cut(s) | 183, 390 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 52 |
| Bse118I | RCCGGY | 1 cut(s) | 409 |
| Bse1I | ACTGG | 2 cut(s) | 172, 502 |
| BseAI | TCCGGA | 2 cut(s) | 183, 390 |
| BseBI | CCWGG | 3 cut(s) | 47, 221, 298 |
| BseDI | CCNNGG | 3 cut(s) | 45, 296, 450 |
| BseGI | GGATG | 2 cut(s) | 70, 446 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BseMII | CTCAG | 1 cut(s) | 274 |
| BseNI | ACTGG | 2 cut(s) | 172, 502 |
| BseSI | GKGCMC | 1 cut(s) | 316 |
| BseXI | GCAGC | 1 cut(s) | 111 |
| BseYI | CCCAGC | 1 cut(s) | 56 |
| BsgI | GTGCAG | 1 cut(s) | 81 |
| Bsh1236I | CGCG | 1 cut(s) | 516 |
| BshFI | GGCC | 2 cut(s) | 5, 231 |
| BsiHKAI | GWGCWC | 1 cut(s) | 316 |
| BsiSI | CCGG | 4 cut(s) | 184, 354, 391, 410 |
| BslFI | GGGAC | 1 cut(s) | 28 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BsmAI | GTCTC | 1 cut(s) | 523 |
| BsmBI | CGTCTC | 1 cut(s) | 523 |
| BsmFI | GGGAC | 1 cut(s) | 28 |
| BsnI | GGCC | 2 cut(s) | 5, 231 |
| Bsp1286I | GDGCHC | 1 cut(s) | 316 |
| Bsp13I | TCCGGA | 2 cut(s) | 183, 390 |
| Bsp143I | GATC | 5 cut(s) | 92, 256, 268, 393, 528 |
| Bsp19I | CCATGG | 1 cut(s) | 450 |
| BspACI | CCGC | 2 cut(s) | 20, 407 |
| BspANI | GGCC | 2 cut(s) | 5, 231 |
| BspCNI | CTCAG | 1 cut(s) | 273 |
| BspEI | TCCGGA | 2 cut(s) | 183, 390 |
| BspFNI | CGCG | 1 cut(s) | 516 |
| BspLI | GGNNCC | 2 cut(s) | 295, 351 |
| BspOI | GCTAGC | 1 cut(s) | 131 |
| BspPI | GGATC | 3 cut(s) | 100, 276, 401 |
| BsrFI | RCCGGY | 1 cut(s) | 409 |
| BsrI | ACTGG | 2 cut(s) | 172, 502 |
| BssAI | RCCGGY | 1 cut(s) | 409 |
| BssECI | CCNNGG | 3 cut(s) | 45, 296, 450 |
| BssMI | GATC | 5 cut(s) | 92, 256, 268, 393, 528 |
| BssNI | GRCGYC | 1 cut(s) | 41 |
| BssT1I | CCWWGG | 1 cut(s) | 450 |
| Bst2UI | CCWGG | 3 cut(s) | 47, 221, 298 |
| Bst6I | CTCTTC | 1 cut(s) | 383 |
| BstACI | GRCGYC | 1 cut(s) | 41 |
| BstBAI | YACGTR | 1 cut(s) | 227 |
| BstC8I | GCNNGC | 3 cut(s) | 31, 129, 411 |
| BstDEI | CTNAG | 1 cut(s) | 260 |
| BstDSI | CCRYGG | 1 cut(s) | 450 |
| BstF5I | GGATG | 2 cut(s) | 70, 446 |
| BstFNI | CGCG | 1 cut(s) | 516 |
| BstHHI | GCGC | 1 cut(s) | 108 |
| BstKTI | GATC | 5 cut(s) | 95, 259, 271, 396, 531 |
| BstMAI | GTCTC | 1 cut(s) | 523 |
| BstMBI | GATC | 5 cut(s) | 92, 256, 268, 393, 528 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 26, 35, 133, 356, 452 |
| BstNI | CCWGG | 3 cut(s) | 47, 221, 298 |
| BstSCI | CCNGG | 4 cut(s) | 45, 219, 296, 352 |
| BstSLI | GKGCMC | 1 cut(s) | 316 |
| BstUI | CGCG | 1 cut(s) | 516 |
| BstV1I | GCAGC | 1 cut(s) | 111 |
| BstX2I | RGATCY | 2 cut(s) | 92, 528 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 227 |
| BstYI | RGATCY | 2 cut(s) | 92, 528 |
| BsuRI | GGCC | 2 cut(s) | 5, 231 |
| BtgI | CCRYGG | 1 cut(s) | 450 |
| BtsCI | GGATG | 2 cut(s) | 70, 446 |
| BtsIMutI | CAGTG | 1 cut(s) | 179 |
| Cac8I | GCNNGC | 3 cut(s) | 31, 129, 411 |
| CfoI | GCGC | 1 cut(s) | 108 |
| Cfr10I | RCCGGY | 1 cut(s) | 409 |
| Cfr13I | GGNCC | 1 cut(s) | 293 |
| CseI | GACGC | 1 cut(s) | 505 |
| Csp6I | GTAC | 1 cut(s) | 301 |
| CviAII | CATG | 3 cut(s) | 89, 451, 524 |
| CviJI | RGCY | 9 cut(s) | 5, 33, 50, 56, 136, 231, 350, 455, 484 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 33, 50, 56, 136, 231, 350, 455, 484 |
| CviQI | GTAC | 1 cut(s) | 301 |
| DdeI | CTNAG | 1 cut(s) | 260 |
| DpnI | GATC | 5 cut(s) | 94, 258, 270, 395, 530 |
| DpnII | GATC | 5 cut(s) | 92, 256, 268, 393, 528 |
| EaeI | YGGCCR | 1 cut(s) | 229 |
| Eam1104I | CTCTTC | 1 cut(s) | 383 |
| EarI | CTCTTC | 1 cut(s) | 383 |
| Eco130I | CCWWGG | 1 cut(s) | 450 |
| Eco47I | GGWCC | 1 cut(s) | 293 |
| Eco57I | CTGAAG | 1 cut(s) | 517 |
| Eco72I | CACGTG | 1 cut(s) | 227 |
| EcoO109I | RGGNCCY | 1 cut(s) | 293 |
| EcoRII | CCWGG | 3 cut(s) | 45, 219, 296 |
| EcoT14I | CCWWGG | 1 cut(s) | 450 |
| ErhI | CCWWGG | 1 cut(s) | 450 |
| Esp3I | CGTCTC | 1 cut(s) | 523 |
| FaeI | CATG | 3 cut(s) | 92, 454, 527 |
| FaiI | YATR | 7 cut(s) | 77, 90, 326, 336, 452, 525, 550 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 470, 502 |
| FaqI | GGGAC | 1 cut(s) | 28 |
| FatI | CATG | 3 cut(s) | 88, 450, 523 |
| FauI | CCCGC | 1 cut(s) | 414 |
| Fnu4HI | GCNGC | 1 cut(s) | 125 |
| FokI | GGATG | 2 cut(s) | 77, 433 |
| Fsp4HI | GCNGC | 1 cut(s) | 125 |
| FspBI | CTAG | 1 cut(s) | 128 |
| GlaI | GCGC | 1 cut(s) | 107 |
| GluI | GCNGC | 1 cut(s) | 125 |
| GsaI | CCCAGC | 1 cut(s) | 60 |
| GsuI | CTGGAG | 1 cut(s) | 155 |
| HaeIII | GGCC | 2 cut(s) | 5, 231 |
| HapII | CCGG | 4 cut(s) | 184, 354, 391, 410 |
| HgaI | GACGC | 1 cut(s) | 505 |
| HhaI | GCGC | 1 cut(s) | 108 |
| Hin1I | GRCGYC | 1 cut(s) | 41 |
| Hin1II | CATG | 3 cut(s) | 92, 454, 527 |
| Hin6I | GCGC | 1 cut(s) | 106 |
| HinP1I | GCGC | 1 cut(s) | 106 |
| HinfI | GANTC | 1 cut(s) | 371 |
| HpaII | CCGG | 4 cut(s) | 184, 354, 391, 410 |
| HphI | GGTGA | 2 cut(s) | 34, 433 |
| Hpy166II | GTNNAC | 2 cut(s) | 73, 314 |
| Hpy188I | TCNGA | 3 cut(s) | 141, 166, 536 |
| Hpy188III | TCNNGA | 5 cut(s) | 184, 200, 262, 391, 467 |
| Hpy8I | GTNNAC | 2 cut(s) | 73, 314 |
| Hpy99I | CGWCG | 1 cut(s) | 43 |
| HpyCH4IV | ACGT | 3 cut(s) | 41, 226, 441 |
| HpyCH4V | TGCA | 2 cut(s) | 98, 314 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 26, 35, 133, 356, 452 |
| HpyF3I | CTNAG | 1 cut(s) | 260 |
| HpySE526I | ACGT | 3 cut(s) | 41, 226, 441 |
| Hsp92I | GRCGYC | 1 cut(s) | 41 |
| Hsp92II | CATG | 3 cut(s) | 92, 454, 527 |
| HspAI | GCGC | 1 cut(s) | 106 |
| Kpn2I | TCCGGA | 2 cut(s) | 183, 390 |
| KroI | GCCGGC | 1 cut(s) | 409 |
| KroNI | GCCGGC | 1 cut(s) | 411 |
| Kzo9I | GATC | 5 cut(s) | 92, 256, 268, 393, 528 |
| LmnI | GCTCC | 2 cut(s) | 163, 355 |
| Lsp1109I | GCAGC | 1 cut(s) | 111 |
| LweI | GCATC | 3 cut(s) | 7, 117, 455 |
| MaeI | CTAG | 1 cut(s) | 128 |
| MaeII | ACGT | 3 cut(s) | 41, 226, 441 |
| MaeIII | GTNAC | 1 cut(s) | 22 |
| MalI | GATC | 5 cut(s) | 94, 258, 270, 395, 530 |
| MboI | GATC | 5 cut(s) | 92, 256, 268, 393, 528 |
| MboII | GAAGA | 4 cut(s) | 370, 376, 523, 535 |
| MflI | RGATCY | 2 cut(s) | 92, 528 |
| MhlI | GDGCHC | 1 cut(s) | 316 |
| MlsI | TGGCCA | 1 cut(s) | 231 |
| MluCI | AATT | 2 cut(s) | 461, 504 |
| MluNI | TGGCCA | 1 cut(s) | 231 |
| MlyI | GAGTC | 1 cut(s) | 365 |
| MmeI | TCCRAC | 1 cut(s) | 396 |
| Mox20I | TGGCCA | 1 cut(s) | 231 |
| MreI | CGCCGGCG | 1 cut(s) | 409 |
| MroI | TCCGGA | 2 cut(s) | 183, 390 |
| MroNI | GCCGGC | 1 cut(s) | 409 |
| MscI | TGGCCA | 1 cut(s) | 231 |
| MseI | TTAA | 1 cut(s) | 306 |
| Msp20I | TGGCCA | 1 cut(s) | 231 |
| MspI | CCGG | 4 cut(s) | 184, 354, 391, 410 |
| MspR9I | CCNGG | 4 cut(s) | 47, 221, 298, 354 |
| MvaI | CCWGG | 3 cut(s) | 47, 221, 298 |
| MvnI | CGCG | 1 cut(s) | 516 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 26, 35, 133, 356, 452 |
| NaeI | GCCGGC | 1 cut(s) | 411 |
| NciI | CCSGG | 1 cut(s) | 354 |
| NcoI | CCATGG | 1 cut(s) | 450 |
| NdeII | GATC | 5 cut(s) | 92, 256, 268, 393, 528 |
| NgoMIV | GCCGGC | 1 cut(s) | 409 |
| NheI | GCTAGC | 1 cut(s) | 127 |
| NlaIII | CATG | 3 cut(s) | 92, 454, 527 |
| NlaIV | GGNNCC | 2 cut(s) | 295, 351 |
| NmuCI | GTSAC | 1 cut(s) | 22 |
| PdiI | GCCGGC | 1 cut(s) | 411 |
| PkrI | GCNGC | 1 cut(s) | 126 |
| PleI | GAGTC | 1 cut(s) | 365 |
| PmaCI | CACGTG | 1 cut(s) | 227 |
| PmlI | CACGTG | 1 cut(s) | 227 |
| PpsI | GAGTC | 1 cut(s) | 365 |
| Ppu21I | YACGTR | 1 cut(s) | 227 |
| PpuMI | RGGWCCY | 1 cut(s) | 293 |
| Psp5II | RGGWCCY | 1 cut(s) | 293 |
| Psp6I | CCWGG | 3 cut(s) | 45, 219, 296 |
| PspCI | CACGTG | 1 cut(s) | 227 |
| PspFI | CCCAGC | 1 cut(s) | 56 |
| PspGI | CCWGG | 3 cut(s) | 45, 219, 296 |
| PspN4I | GGNNCC | 2 cut(s) | 295, 351 |
| PspPI | GGNCC | 1 cut(s) | 293 |
| PspPPI | RGGWCCY | 1 cut(s) | 293 |
| PsuI | RGATCY | 2 cut(s) | 92, 528 |
| RsaI | GTAC | 1 cut(s) | 302 |
| RsaNI | GTAC | 1 cut(s) | 301 |
| SaqAI | TTAA | 1 cut(s) | 306 |
| SatI | GCNGC | 1 cut(s) | 125 |
| Sau3AI | GATC | 5 cut(s) | 92, 256, 268, 393, 528 |
| Sau96I | GGNCC | 1 cut(s) | 293 |
| SchI | GAGTC | 1 cut(s) | 365 |
| ScrFI | CCNGG | 4 cut(s) | 47, 221, 298, 354 |
| SduI | GDGCHC | 1 cut(s) | 316 |
| SetI | ASST | 8 cut(s) | 35, 44, 171, 229, 423, 444, 486, 541 |
| SfaNI | GCATC | 3 cut(s) | 7, 117, 455 |
| SgrAI | CRCCGGYG | 1 cut(s) | 409 |
| SinI | GGWCC | 1 cut(s) | 293 |
| Sse9I | AATT | 2 cut(s) | 461, 504 |
| SsiI | CCGC | 2 cut(s) | 20, 407 |
| SspMI | CTAG | 1 cut(s) | 128 |
| StyD4I | CCNGG | 4 cut(s) | 45, 219, 296, 352 |
| StyI | CCWWGG | 1 cut(s) | 450 |
| TaiI | ACGT | 3 cut(s) | 44, 229, 444 |
| TaqI | TCGA | 1 cut(s) | 271 |
| TasI | AATT | 2 cut(s) | 461, 504 |
| Tru1I | TTAA | 1 cut(s) | 306 |
| Tru9I | TTAA | 1 cut(s) | 306 |
| TscAI | CASTG | 1 cut(s) | 179 |
| TseFI | GTSAC | 1 cut(s) | 22 |
| TseI | GCWGC | 1 cut(s) | 124 |
| Tsp45I | GTSAC | 1 cut(s) | 22 |
| TspDTI | ATGAA | 1 cut(s) | 77 |
| TspRI | CASTG | 1 cut(s) | 179 |
| VneI | GTGCAC | 1 cut(s) | 312 |
| VpaK11BI | GGWCC | 1 cut(s) | 293 |
| XapI | RAATTY | 1 cut(s) | 461 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 439 |
| XspI | CTAG | 1 cut(s) | 128 |
| ZraI | GACGTC | 1 cut(s) | 42 |