Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 53 |
| AciI | CCGC | 3 cut(s) | 122, 170, 954 |
| AclWI | GGATC | 2 cut(s) | 96, 198 |
| AcsI | RAATTY | 1 cut(s) | 785 |
| AcyI | GRCGYC | 1 cut(s) | 372 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 53, 530 |
| AgeI | ACCGGT | 1 cut(s) | 526 |
| AgsI | TTSAA | 4 cut(s) | 22, 44, 478, 790 |
| AjnI | CCWGG | 1 cut(s) | 820 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 458, 490 |
| AluBI | AGCT | 5 cut(s) | 199, 304, 433, 611, 697 |
| AluI | AGCT | 5 cut(s) | 199, 304, 433, 611, 697 |
| Alw26I | GTCTC | 2 cut(s) | 551, 809 |
| AlwI | GGATC | 2 cut(s) | 96, 198 |
| AoxI | GGCC | 3 cut(s) | 630, 674, 905 |
| ApeKI | GCWGC | 2 cut(s) | 339, 697 |
| ApoI | RAATTY | 1 cut(s) | 785 |
| AsiGI | ACCGGT | 1 cut(s) | 526 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 254 |
| AspS9I | GGNCC | 2 cut(s) | 8, 675 |
| AsuC2I | CCSGG | 1 cut(s) | 395 |
| AsuHPI | GGTGA | 2 cut(s) | 103, 382 |
| AsuII | TTCGAA | 1 cut(s) | 248 |
| AvaII | GGWCC | 1 cut(s) | 8 |
| BbsI | GAAGAC | 1 cut(s) | 624 |
| BbvI | GCAGC | 2 cut(s) | 351, 684 |
| BccI | CCATC | 3 cut(s) | 47, 76, 476 |
| BceAI | ACGGC | 1 cut(s) | 438 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 41, 75 |
| BciT130I | CCWGG | 1 cut(s) | 822 |
| BcnI | CCSGG | 1 cut(s) | 395 |
| BcoDI | GTCTC | 2 cut(s) | 551, 809 |
| BfaI | CTAG | 1 cut(s) | 1002 |
| BfmI | CTRYAG | 1 cut(s) | 75 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1011 |
| BglII | AGATCT | 1 cut(s) | 536 |
| BisI | GCNGC | 3 cut(s) | 122, 340, 698 |
| BlsI | GCNGC | 3 cut(s) | 123, 341, 699 |
| Bme1390I | CCNGG | 2 cut(s) | 395, 822 |
| Bme18I | GGWCC | 1 cut(s) | 8 |
| BmgT120I | GGNCC | 2 cut(s) | 8, 675 |
| BmiI | GGNNCC | 3 cut(s) | 411, 916, 951 |
| BmrFI | CCNGG | 2 cut(s) | 395, 822 |
| BmsI | GCATC | 1 cut(s) | 843 |
| BoxI | GACNNNNGTC | 1 cut(s) | 845 |
| BpiI | GAAGAC | 1 cut(s) | 624 |
| BpmI | CTGGAG | 1 cut(s) | 743 |
| Bpu14I | TTCGAA | 1 cut(s) | 248 |
| BpuMI | CCSGG | 1 cut(s) | 395 |
| BsaHI | GRCGYC | 1 cut(s) | 372 |
| BsaI | GGTCTC | 1 cut(s) | 809 |
| BsaJI | CCNNGG | 5 cut(s) | 11, 393, 499, 633, 820 |
| BsaWI | WCCGGW | 1 cut(s) | 526 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 53, 530 |
| Bse118I | RCCGGY | 1 cut(s) | 526 |
| Bse1I | ACTGG | 2 cut(s) | 726, 813 |
| BseBI | CCWGG | 1 cut(s) | 822 |
| BseDI | CCNNGG | 5 cut(s) | 11, 393, 499, 633, 820 |
| BseGI | GGATG | 1 cut(s) | 487 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 53, 530 |
| BseMII | CTCAG | 2 cut(s) | 546, 959 |
| BseNI | ACTGG | 2 cut(s) | 726, 813 |
| BseXI | GCAGC | 2 cut(s) | 351, 684 |
| BshFI | GGCC | 3 cut(s) | 632, 676, 907 |
| BshTI | ACCGGT | 1 cut(s) | 526 |
| BsiSI | CCGG | 2 cut(s) | 395, 527 |
| BslFI | GGGAC | 3 cut(s) | 383, 432, 819 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 53, 530 |
| BsmAI | GTCTC | 2 cut(s) | 551, 809 |
| BsmFI | GGGAC | 3 cut(s) | 383, 432, 819 |
| BsmI | GAATGC | 1 cut(s) | 773 |
| BsnI | GGCC | 3 cut(s) | 632, 676, 907 |
| Bso31I | GGTCTC | 1 cut(s) | 809 |
| Bsp119I | TTCGAA | 1 cut(s) | 248 |
| Bsp143I | GATC | 5 cut(s) | 88, 190, 438, 536, 670 |
| BspACI | CCGC | 3 cut(s) | 122, 170, 954 |
| BspANI | GGCC | 3 cut(s) | 632, 676, 907 |
| BspCNI | CTCAG | 2 cut(s) | 547, 960 |
| BspHI | TCATGA | 2 cut(s) | 613, 849 |
| BspLI | GGNNCC | 3 cut(s) | 411, 916, 951 |
| BspPI | GGATC | 2 cut(s) | 96, 198 |
| BspT104I | TTCGAA | 1 cut(s) | 248 |
| BspTNI | GGTCTC | 1 cut(s) | 809 |
| BsrFI | RCCGGY | 1 cut(s) | 526 |
| BsrI | ACTGG | 2 cut(s) | 726, 813 |
| BssAI | RCCGGY | 1 cut(s) | 526 |
| BssECI | CCNNGG | 5 cut(s) | 11, 393, 499, 633, 820 |
| BssMI | GATC | 5 cut(s) | 88, 190, 438, 536, 670 |
| BssNI | GRCGYC | 1 cut(s) | 372 |
| BssT1I | CCWWGG | 2 cut(s) | 499, 633 |
| Bst2UI | CCWGG | 1 cut(s) | 822 |
| Bst4CI | ACNGT | 1 cut(s) | 12 |
| Bst6I | CTCTTC | 1 cut(s) | 890 |
| BstACI | GRCGYC | 1 cut(s) | 372 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 345 |
| BstBI | TTCGAA | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 4 cut(s) | 126, 376, 435, 771 |
| BstDEI | CTNAG | 2 cut(s) | 555, 968 |
| BstDSI | CCRYGG | 1 cut(s) | 11 |
| BstF5I | GGATG | 1 cut(s) | 487 |
| BstKTI | GATC | 5 cut(s) | 91, 193, 441, 539, 673 |
| BstMAI | GTCTC | 2 cut(s) | 551, 809 |
| BstMBI | GATC | 5 cut(s) | 88, 190, 438, 536, 670 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 158, 167, 339, 345, 735, 1011 |
| BstNI | CCWGG | 1 cut(s) | 822 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 845 |
| BstSCI | CCNGG | 2 cut(s) | 393, 820 |
| BstSFI | CTRYAG | 1 cut(s) | 75 |
| BstV1I | GCAGC | 2 cut(s) | 351, 684 |
| BstV2I | GAAGAC | 1 cut(s) | 624 |
| BstX2I | RGATCY | 2 cut(s) | 88, 536 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 802 |
| BstYI | RGATCY | 2 cut(s) | 88, 536 |
| BsuRI | GGCC | 3 cut(s) | 632, 676, 907 |
| BtgI | CCRYGG | 1 cut(s) | 11 |
| BtsCI | GGATG | 1 cut(s) | 487 |
| Cac8I | GCNNGC | 4 cut(s) | 126, 376, 435, 771 |
| CciI | TCATGA | 2 cut(s) | 613, 849 |
| Cfr10I | RCCGGY | 1 cut(s) | 526 |
| Cfr13I | GGNCC | 2 cut(s) | 8, 675 |
| CseI | GACGC | 1 cut(s) | 380 |
| CspAI | ACCGGT | 1 cut(s) | 526 |
| CviAII | CATG | 7 cut(s) | 239, 262, 403, 593, 614, 850, 881 |
| DdeI | CTNAG | 2 cut(s) | 555, 968 |
| DpnI | GATC | 5 cut(s) | 90, 192, 440, 538, 672 |
| DpnII | GATC | 5 cut(s) | 88, 190, 438, 536, 670 |
| Eam1104I | CTCTTC | 1 cut(s) | 890 |
| EarI | CTCTTC | 1 cut(s) | 890 |
| Eco130I | CCWWGG | 2 cut(s) | 499, 633 |
| Eco31I | GGTCTC | 1 cut(s) | 809 |
| Eco47I | GGWCC | 1 cut(s) | 8 |
| EcoRII | CCWGG | 1 cut(s) | 820 |
| EcoT14I | CCWWGG | 2 cut(s) | 499, 633 |
| EcoT22I | ATGCAT | 1 cut(s) | 628 |
| ErhI | CCWWGG | 2 cut(s) | 499, 633 |
| FaeI | CATG | 7 cut(s) | 242, 265, 406, 596, 617, 853, 884 |
| FaqI | GGGAC | 3 cut(s) | 383, 432, 819 |
| FatI | CATG | 7 cut(s) | 238, 261, 402, 592, 613, 849, 880 |
| FauI | CCCGC | 2 cut(s) | 163, 961 |
| FauNDI | CATATG | 2 cut(s) | 130, 344 |
| Fnu4HI | GCNGC | 3 cut(s) | 122, 340, 698 |
| FokI | GGATG | 1 cut(s) | 494 |
| Fsp4HI | GCNGC | 3 cut(s) | 122, 340, 698 |
| FspBI | CTAG | 1 cut(s) | 1002 |
| GluI | GCNGC | 3 cut(s) | 122, 340, 698 |
| GsuI | CTGGAG | 1 cut(s) | 743 |
| HaeIII | GGCC | 3 cut(s) | 632, 676, 907 |
| HapII | CCGG | 2 cut(s) | 395, 527 |
| HgaI | GACGC | 1 cut(s) | 380 |
| Hin1I | GRCGYC | 1 cut(s) | 372 |
| Hin1II | CATG | 7 cut(s) | 242, 265, 406, 596, 617, 853, 884 |
| HindIII | AAGCTT | 2 cut(s) | 197, 431 |
| HinfI | GANTC | 1 cut(s) | 322 |
| HpaII | CCGG | 2 cut(s) | 395, 527 |
| HphI | GGTGA | 2 cut(s) | 103, 382 |
| Hpy166II | GTNNAC | 2 cut(s) | 8, 575 |
| Hpy188I | TCNGA | 2 cut(s) | 195, 715 |
| Hpy188III | TCNNGA | 7 cut(s) | 188, 215, 464, 614, 706, 850, 967 |
| Hpy8I | GTNNAC | 2 cut(s) | 8, 575 |
| Hpy99I | CGWCG | 1 cut(s) | 424 |
| HpyAV | CCTTC | 4 cut(s) | 265, 688, 751, 873 |
| HpyCH4III | ACNGT | 1 cut(s) | 12 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 158, 167, 339, 345, 735, 1011 |
| HpyF3I | CTNAG | 2 cut(s) | 555, 968 |
| Hsp92I | GRCGYC | 1 cut(s) | 372 |
| Hsp92II | CATG | 7 cut(s) | 242, 265, 406, 596, 617, 853, 884 |
| Kzo9I | GATC | 5 cut(s) | 88, 190, 438, 536, 670 |
| LmnI | GCTCC | 4 cut(s) | 301, 415, 751, 914 |
| Lsp1109I | GCAGC | 2 cut(s) | 351, 684 |
| LweI | GCATC | 1 cut(s) | 843 |
| MaeI | CTAG | 1 cut(s) | 1002 |
| MaeIII | GTNAC | 1 cut(s) | 646 |
| MalI | GATC | 5 cut(s) | 90, 192, 440, 538, 672 |
| MboI | GATC | 5 cut(s) | 88, 190, 438, 536, 670 |
| MboII | GAAGA | 7 cut(s) | 173, 250, 546, 578, 629, 904, 907 |
| MflI | RGATCY | 2 cut(s) | 88, 536 |
| MluCI | AATT | 4 cut(s) | 219, 243, 701, 785 |
| Mph1103I | ATGCAT | 1 cut(s) | 628 |
| MroXI | GAANNNNTTC | 1 cut(s) | 254 |
| MslI | CAYNNNNRTG | 1 cut(s) | 116 |
| MspA1I | CMGCKG | 1 cut(s) | 956 |
| MspI | CCGG | 2 cut(s) | 395, 527 |
| MspR9I | CCNGG | 2 cut(s) | 395, 822 |
| Mva1269I | GAATGC | 1 cut(s) | 773 |
| MvaI | CCWGG | 1 cut(s) | 822 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 158, 167, 339, 345, 735, 1011 |
| NciI | CCSGG | 1 cut(s) | 395 |
| NdeI | CATATG | 2 cut(s) | 130, 344 |
| NdeII | GATC | 5 cut(s) | 88, 190, 438, 536, 670 |
| NlaIII | CATG | 7 cut(s) | 242, 265, 406, 596, 617, 853, 884 |
| NlaIV | GGNNCC | 3 cut(s) | 411, 916, 951 |
| NsiI | ATGCAT | 1 cut(s) | 628 |
| NspV | TTCGAA | 1 cut(s) | 248 |
| PagI | TCATGA | 2 cut(s) | 613, 849 |
| PctI | GAATGC | 1 cut(s) | 773 |
| PdmI | GAANNNNTTC | 1 cut(s) | 254 |
| PfeI | GAWTC | 1 cut(s) | 322 |
| PflFI | GACNNNGTC | 1 cut(s) | 962 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 53 |
| PinAI | ACCGGT | 1 cut(s) | 526 |
| PkrI | GCNGC | 3 cut(s) | 123, 341, 699 |
| PshAI | GACNNNNGTC | 1 cut(s) | 845 |
| Psp6I | CCWGG | 1 cut(s) | 820 |
| PspGI | CCWGG | 1 cut(s) | 820 |
| PspN4I | GGNNCC | 3 cut(s) | 411, 916, 951 |
| PspPI | GGNCC | 2 cut(s) | 8, 675 |
| PsuI | RGATCY | 2 cut(s) | 88, 536 |
| PsyI | GACNNNGTC | 1 cut(s) | 962 |
| RseI | CAYNNNNRTG | 1 cut(s) | 116 |
| SatI | GCNGC | 3 cut(s) | 122, 340, 698 |
| Sau3AI | GATC | 5 cut(s) | 88, 190, 438, 536, 670 |
| Sau96I | GGNCC | 2 cut(s) | 8, 675 |
| ScrFI | CCNGG | 2 cut(s) | 395, 822 |
| SfaNI | GCATC | 1 cut(s) | 843 |
| SfcI | CTRYAG | 1 cut(s) | 75 |
| SfuI | TTCGAA | 1 cut(s) | 248 |
| SgrAI | CRCCGGYG | 1 cut(s) | 526 |
| SinI | GGWCC | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 116 |
| Sse9I | AATT | 4 cut(s) | 219, 243, 701, 785 |
| SsiI | CCGC | 3 cut(s) | 122, 170, 954 |
| SspMI | CTAG | 1 cut(s) | 1002 |
| StyD4I | CCNGG | 2 cut(s) | 393, 820 |
| StyI | CCWWGG | 2 cut(s) | 499, 633 |
| TaaI | ACNGT | 1 cut(s) | 12 |
| TaqI | TCGA | 1 cut(s) | 248 |
| TasI | AATT | 4 cut(s) | 219, 243, 701, 785 |
| TauI | GCSGC | 1 cut(s) | 124 |
| TfiI | GAWTC | 1 cut(s) | 322 |
| TseI | GCWGC | 2 cut(s) | 339, 697 |
| TspDTI | ATGAA | 3 cut(s) | 173, 250, 630 |
| Tth111I | GACNNNGTC | 1 cut(s) | 962 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 53 |
| VpaK11BI | GGWCC | 1 cut(s) | 8 |
| XapI | RAATTY | 1 cut(s) | 785 |
| XmnI | GAANNNNTTC | 1 cut(s) | 254 |
| XspI | CTAG | 1 cut(s) | 1002 |
| Zsp2I | ATGCAT | 1 cut(s) | 628 |