Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 470 |
| AciI | CCGC | 6 cut(s) | 365, 481, 543, 920, 1023, 1098 |
| AclWI | GGATC | 3 cut(s) | 85, 746, 1030 |
| AcoI | YGGCCR | 1 cut(s) | 561 |
| AcsI | RAATTY | 2 cut(s) | 310, 896 |
| AcuI | CTGAAG | 1 cut(s) | 63 |
| AfaI | GTAC | 1 cut(s) | 1027 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 370, 374, 470, 1048 |
| AflIII | ACRYGT | 1 cut(s) | 426 |
| AgeI | ACCGGT | 1 cut(s) | 316 |
| AgsI | TTSAA | 8 cut(s) | 167, 251, 593, 624, 950, 987, 1067, 1139 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 359 |
| AleI | CACNNNNGTG | 1 cut(s) | 876 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 178, 210, 840, 872 |
| AluBI | AGCT | 5 cut(s) | 395, 531, 636, 656, 752 |
| AluI | AGCT | 5 cut(s) | 395, 531, 636, 656, 752 |
| Alw21I | GWGCWC | 1 cut(s) | 658 |
| Alw26I | GTCTC | 2 cut(s) | 112, 276 |
| AlwI | GGATC | 3 cut(s) | 85, 746, 1030 |
| Ama87I | CYCGRG | 1 cut(s) | 228 |
| AoxI | GGCC | 1 cut(s) | 561 |
| ApeKI | GCWGC | 1 cut(s) | 1145 |
| ApoI | RAATTY | 2 cut(s) | 310, 896 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 131, 163 |
| AsiGI | ACCGGT | 1 cut(s) | 316 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 48 |
| AspS9I | GGNCC | 1 cut(s) | 922 |
| AsuHPI | GGTGA | 4 cut(s) | 306, 314, 905, 916 |
| AvaI | CYCGRG | 1 cut(s) | 228 |
| AvaII | GGWCC | 1 cut(s) | 922 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1017, 1050 |
| BalI | TGGCCA | 1 cut(s) | 563 |
| BanII | GRGCYC | 2 cut(s) | 658, 694 |
| BauI | CACGAG | 1 cut(s) | 804 |
| Bbv12I | GWGCWC | 1 cut(s) | 658 |
| BbvI | GCAGC | 1 cut(s) | 1132 |
| BccI | CCATC | 1 cut(s) | 472 |
| BclI | TGATCA | 1 cut(s) | 129 |
| BcoDI | GTCTC | 2 cut(s) | 112, 276 |
| BfaI | CTAG | 5 cut(s) | 53, 183, 243, 419, 599 |
| BfmI | CTRYAG | 1 cut(s) | 1093 |
| BisI | GCNGC | 1 cut(s) | 1146 |
| BlsI | GCNGC | 1 cut(s) | 1147 |
| Bme18I | GGWCC | 1 cut(s) | 922 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 359 |
| BmeT110I | CYCGRG | 1 cut(s) | 228 |
| BmgT120I | GGNCC | 1 cut(s) | 922 |
| BmiI | GGNNCC | 5 cut(s) | 258, 345, 461, 747, 924 |
| BmrI | ACTGGG | 1 cut(s) | 744 |
| BmsI | GCATC | 1 cut(s) | 182 |
| BmuI | ACTGGG | 1 cut(s) | 744 |
| BsaWI | WCCGGW | 2 cut(s) | 93, 316 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 189, 219 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 370, 374, 470, 1048 |
| Bse118I | RCCGGY | 2 cut(s) | 69, 316 |
| Bse1I | ACTGG | 2 cut(s) | 475, 739 |
| Bse3DI | GCAATG | 2 cut(s) | 797, 1128 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 370, 374, 470, 1048 |
| BseMI | GCAATG | 2 cut(s) | 797, 1128 |
| BseMII | CTCAG | 3 cut(s) | 158, 191, 866 |
| BseNI | ACTGG | 2 cut(s) | 475, 739 |
| BseRI | GAGGAG | 7 cut(s) | 26, 29, 32, 35, 194, 197, 648 |
| BseXI | GCAGC | 1 cut(s) | 1132 |
| BsgI | GTGCAG | 1 cut(s) | 196 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1102 |
| BshFI | GGCC | 1 cut(s) | 563 |
| BshTI | ACCGGT | 1 cut(s) | 316 |
| BsiEI | CGRYCG | 1 cut(s) | 1102 |
| BsiHKAI | GWGCWC | 1 cut(s) | 658 |
| BsiHKCI | CYCGRG | 1 cut(s) | 228 |
| BsiSI | CCGG | 5 cut(s) | 70, 94, 317, 368, 787 |
| BslFI | GGGAC | 3 cut(s) | 312, 347, 908 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 370, 374, 470, 1048 |
| BsmAI | GTCTC | 2 cut(s) | 112, 276 |
| BsmFI | GGGAC | 3 cut(s) | 312, 347, 908 |
| BsmI | GAATGC | 1 cut(s) | 838 |
| BsnI | GGCC | 1 cut(s) | 563 |
| BsoBI | CYCGRG | 1 cut(s) | 228 |
| Bsp1286I | GDGCHC | 2 cut(s) | 658, 694 |
| Bsp143I | GATC | 6 cut(s) | 34, 90, 129, 738, 813, 1035 |
| BspACI | CCGC | 6 cut(s) | 365, 481, 543, 920, 1023, 1098 |
| BspANI | GGCC | 1 cut(s) | 563 |
| BspCNI | CTCAG | 3 cut(s) | 157, 190, 865 |
| BspLI | GGNNCC | 5 cut(s) | 258, 345, 461, 747, 924 |
| BspPI | GGATC | 3 cut(s) | 85, 746, 1030 |
| BsrDI | GCAATG | 2 cut(s) | 797, 1128 |
| BsrFI | RCCGGY | 2 cut(s) | 69, 316 |
| BsrI | ACTGG | 2 cut(s) | 475, 739 |
| BssAI | RCCGGY | 2 cut(s) | 69, 316 |
| BssMI | GATC | 6 cut(s) | 34, 90, 129, 738, 813, 1035 |
| BssSI | CACGAG | 1 cut(s) | 804 |
| Bst2BI | CACGAG | 1 cut(s) | 804 |
| Bst4CI | ACNGT | 6 cut(s) | 117, 326, 361, 407, 1030, 1153 |
| BstC8I | GCNNGC | 1 cut(s) | 750 |
| BstDEI | CTNAG | 3 cut(s) | 144, 177, 852 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1046 |
| BstKTI | GATC | 6 cut(s) | 37, 93, 132, 741, 816, 1038 |
| BstMAI | GTCTC | 2 cut(s) | 112, 276 |
| BstMBI | GATC | 6 cut(s) | 34, 90, 129, 738, 813, 1035 |
| BstMCI | CGRYCG | 1 cut(s) | 1102 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 758 |
| BstNSI | RCATGY | 1 cut(s) | 295 |
| BstSFI | CTRYAG | 1 cut(s) | 1093 |
| BstV1I | GCAGC | 1 cut(s) | 1132 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 683 |
| BsuRI | GGCC | 1 cut(s) | 563 |
| BtsIMutI | CAGTG | 2 cut(s) | 459, 564 |
| Cac8I | GCNNGC | 1 cut(s) | 750 |
| Cfr10I | RCCGGY | 2 cut(s) | 69, 316 |
| Cfr13I | GGNCC | 1 cut(s) | 922 |
| Csp6I | GTAC | 1 cut(s) | 1026 |
| CspAI | ACCGGT | 1 cut(s) | 316 |
| CviAII | CATG | 5 cut(s) | 292, 399, 554, 559, 639 |
| CviJI | RGCY | 9 cut(s) | 395, 531, 563, 636, 656, 692, 748, 752, 1087 |
| CviKI_1 | RGCY | 9 cut(s) | 395, 531, 563, 636, 656, 692, 748, 752, 1087 |
| CviQI | GTAC | 1 cut(s) | 1026 |
| DdeI | CTNAG | 3 cut(s) | 144, 177, 852 |
| DpnI | GATC | 6 cut(s) | 36, 92, 131, 740, 815, 1037 |
| DpnII | GATC | 6 cut(s) | 34, 90, 129, 738, 813, 1035 |
| DriI | GACNNNNNGTC | 1 cut(s) | 359 |
| EaeI | YGGCCR | 1 cut(s) | 561 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 359 |
| Ecl136II | GAGCTC | 1 cut(s) | 656 |
| Eco24I | GRGCYC | 2 cut(s) | 658, 694 |
| Eco47I | GGWCC | 1 cut(s) | 922 |
| Eco53kI | GAGCTC | 1 cut(s) | 656 |
| Eco57I | CTGAAG | 1 cut(s) | 63 |
| Eco88I | CYCGRG | 1 cut(s) | 228 |
| EcoICRI | GAGCTC | 1 cut(s) | 656 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1046 |
| EcoT38I | GRGCYC | 2 cut(s) | 658, 694 |
| FaeI | CATG | 5 cut(s) | 295, 402, 557, 562, 642 |
| FaqI | GGGAC | 3 cut(s) | 312, 347, 908 |
| FatI | CATG | 5 cut(s) | 291, 398, 553, 558, 638 |
| FauI | CCCGC | 1 cut(s) | 372 |
| FbaI | TGATCA | 1 cut(s) | 129 |
| Fnu4HI | GCNGC | 1 cut(s) | 1146 |
| FriOI | GRGCYC | 2 cut(s) | 658, 694 |
| Fsp4HI | GCNGC | 1 cut(s) | 1146 |
| FspBI | CTAG | 5 cut(s) | 53, 183, 243, 419, 599 |
| GluI | GCNGC | 1 cut(s) | 1146 |
| HaeIII | GGCC | 1 cut(s) | 563 |
| HapII | CCGG | 5 cut(s) | 70, 94, 317, 368, 787 |
| Hin1II | CATG | 5 cut(s) | 295, 402, 557, 562, 642 |
| HinfI | GANTC | 9 cut(s) | 61, 140, 156, 201, 378, 474, 493, 929, 1000 |
| HpaII | CCGG | 5 cut(s) | 70, 94, 317, 368, 787 |
| HphI | GGTGA | 4 cut(s) | 306, 314, 905, 916 |
| Hpy166II | GTNNAC | 4 cut(s) | 99, 197, 322, 613 |
| Hpy188I | TCNGA | 6 cut(s) | 129, 139, 180, 377, 653, 1061 |
| Hpy188III | TCNNGA | 5 cut(s) | 58, 109, 264, 351, 497 |
| Hpy8I | GTNNAC | 4 cut(s) | 99, 197, 322, 613 |
| Hpy99I | CGWCG | 1 cut(s) | 1153 |
| HpyAV | CCTTC | 1 cut(s) | 357 |
| HpyCH4III | ACNGT | 6 cut(s) | 117, 326, 361, 407, 1030, 1153 |
| HpyCH4IV | ACGT | 2 cut(s) | 426, 989 |
| HpyCH4V | TGCA | 8 cut(s) | 173, 213, 402, 536, 608, 836, 1121, 1126 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 758 |
| HpyF3I | CTNAG | 3 cut(s) | 144, 177, 852 |
| HpySE526I | ACGT | 2 cut(s) | 426, 989 |
| Hsp92II | CATG | 5 cut(s) | 295, 402, 557, 562, 642 |
| Ksp22I | TGATCA | 1 cut(s) | 129 |
| Kzo9I | GATC | 6 cut(s) | 34, 90, 129, 738, 813, 1035 |
| LmnI | GCTCC | 3 cut(s) | 661, 710, 745 |
| Lsp1109I | GCAGC | 1 cut(s) | 1132 |
| LweI | GCATC | 1 cut(s) | 182 |
| MaeI | CTAG | 5 cut(s) | 53, 183, 243, 419, 599 |
| MaeII | ACGT | 2 cut(s) | 426, 989 |
| MaeIII | GTNAC | 1 cut(s) | 1012 |
| MalI | GATC | 6 cut(s) | 36, 92, 131, 740, 815, 1037 |
| MboI | GATC | 6 cut(s) | 34, 90, 129, 738, 813, 1035 |
| MboII | GAAGA | 4 cut(s) | 56, 469, 531, 836 |
| MfeI | CAATTG | 1 cut(s) | 791 |
| MhlI | GDGCHC | 2 cut(s) | 658, 694 |
| MlsI | TGGCCA | 1 cut(s) | 563 |
| MluCI | AATT | 7 cut(s) | 310, 445, 714, 791, 896, 950, 1062 |
| MluNI | TGGCCA | 1 cut(s) | 563 |
| MlyI | GAGTC | 3 cut(s) | 134, 195, 502 |
| MmeI | TCCRAC | 4 cut(s) | 162, 355, 489, 977 |
| Mox20I | TGGCCA | 1 cut(s) | 563 |
| MroXI | GAANNNNTTC | 1 cut(s) | 48 |
| MscI | TGGCCA | 1 cut(s) | 563 |
| MseI | TTAA | 1 cut(s) | 939 |
| MslI | CAYNNNNRTG | 2 cut(s) | 681, 876 |
| Msp20I | TGGCCA | 1 cut(s) | 563 |
| MspI | CCGG | 5 cut(s) | 70, 94, 317, 368, 787 |
| MunI | CAATTG | 1 cut(s) | 791 |
| Mva1269I | GAATGC | 1 cut(s) | 838 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 758 |
| NdeII | GATC | 6 cut(s) | 34, 90, 129, 738, 813, 1035 |
| NlaIII | CATG | 5 cut(s) | 295, 402, 557, 562, 642 |
| NlaIV | GGNNCC | 5 cut(s) | 258, 345, 461, 747, 924 |
| NspI | RCATGY | 1 cut(s) | 295 |
| OliI | CACNNNNGTG | 1 cut(s) | 876 |
| PaeR7I | CTCGAG | 1 cut(s) | 228 |
| PctI | GAATGC | 1 cut(s) | 838 |
| PdmI | GAANNNNTTC | 1 cut(s) | 48 |
| PfeI | GAWTC | 6 cut(s) | 61, 156, 378, 474, 929, 1000 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 470 |
| PinAI | ACCGGT | 1 cut(s) | 316 |
| PkrI | GCNGC | 1 cut(s) | 1147 |
| PleI | GAGTC | 3 cut(s) | 134, 195, 501 |
| PpsI | GAGTC | 3 cut(s) | 134, 195, 501 |
| Psp124BI | GAGCTC | 1 cut(s) | 658 |
| PspN4I | GGNNCC | 5 cut(s) | 258, 345, 461, 747, 924 |
| PspPI | GGNCC | 1 cut(s) | 922 |
| PspXI | VCTCGAGB | 1 cut(s) | 228 |
| RsaI | GTAC | 1 cut(s) | 1027 |
| RsaNI | GTAC | 1 cut(s) | 1026 |
| RseI | CAYNNNNRTG | 2 cut(s) | 681, 876 |
| SacI | GAGCTC | 1 cut(s) | 658 |
| SaqAI | TTAA | 1 cut(s) | 939 |
| SatI | GCNGC | 1 cut(s) | 1146 |
| Sau3AI | GATC | 6 cut(s) | 34, 90, 129, 738, 813, 1035 |
| Sau96I | GGNCC | 1 cut(s) | 922 |
| SchI | GAGTC | 3 cut(s) | 134, 195, 502 |
| SduI | GDGCHC | 2 cut(s) | 658, 694 |
| SfaNI | GCATC | 1 cut(s) | 182 |
| SfcI | CTRYAG | 1 cut(s) | 1093 |
| Sfr274I | CTCGAG | 1 cut(s) | 228 |
| SinI | GGWCC | 1 cut(s) | 922 |
| SlaI | CTCGAG | 1 cut(s) | 228 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 681, 876 |
| SmlI | CTYRAG | 1 cut(s) | 228 |
| SmoI | CTYRAG | 1 cut(s) | 228 |
| Sse9I | AATT | 7 cut(s) | 310, 445, 714, 791, 896, 950, 1062 |
| SsiI | CCGC | 6 cut(s) | 365, 481, 543, 920, 1023, 1098 |
| SspMI | CTAG | 5 cut(s) | 53, 183, 243, 419, 599 |
| SstI | GAGCTC | 1 cut(s) | 658 |
| TaaI | ACNGT | 6 cut(s) | 117, 326, 361, 407, 1030, 1153 |
| TaiI | ACGT | 2 cut(s) | 429, 992 |
| TaqI | TCGA | 8 cut(s) | 5, 33, 110, 229, 265, 352, 381, 816 |
| TaqII | GACCGA | 1 cut(s) | 856 |
| TasI | AATT | 7 cut(s) | 310, 445, 714, 791, 896, 950, 1062 |
| TfiI | GAWTC | 6 cut(s) | 61, 156, 378, 474, 929, 1000 |
| Tru1I | TTAA | 1 cut(s) | 939 |
| Tru9I | TTAA | 1 cut(s) | 939 |
| TscAI | CASTG | 2 cut(s) | 459, 571 |
| TseI | GCWGC | 1 cut(s) | 1145 |
| TspDTI | ATGAA | 6 cut(s) | 387, 707, 837, 845, 923, 1176 |
| TspGWI | ACGGA | 2 cut(s) | 182, 1096 |
| TspRI | CASTG | 2 cut(s) | 459, 571 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 470 |
| VpaK11BI | GGWCC | 1 cut(s) | 922 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1046 |
| XapI | RAATTY | 2 cut(s) | 310, 896 |
| XceI | RCATGY | 1 cut(s) | 295 |
| XhoI | CTCGAG | 1 cut(s) | 228 |
| XmnI | GAANNNNTTC | 1 cut(s) | 48 |
| XspI | CTAG | 5 cut(s) | 53, 183, 243, 419, 599 |