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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 468 |
| AccII | CGCG | 1 cut(s) | 780 |
| AciI | CCGC | 2 cut(s) | 374, 637 |
| AclWI | GGATC | 3 cut(s) | 417, 1073, 1392 |
| AcoI | YGGCCR | 1 cut(s) | 483 |
| AcsI | RAATTY | 6 cut(s) | 145, 302, 437, 655, 1627, 1717 |
| AcuI | CTGAAG | 4 cut(s) | 843, 1026, 1575, 1590 |
| AfaI | GTAC | 1 cut(s) | 1306 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 99, 232, 728, 1333 |
| AjnI | CCWGG | 2 cut(s) | 480, 721 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 945, 977 |
| Alw21I | GWGCWC | 1 cut(s) | 363 |
| Alw26I | GTCTC | 2 cut(s) | 907, 1115 |
| AlwI | GGATC | 3 cut(s) | 417, 1073, 1392 |
| AoxI | GGCC | 3 cut(s) | 483, 1035, 1158 |
| ApeKI | GCWGC | 9 cut(s) | 266, 350, 469, 515, 555, 851, 854, 1250, 1253 |
| ApoI | RAATTY | 6 cut(s) | 145, 302, 437, 655, 1627, 1717 |
| AspLEI | GCGC | 2 cut(s) | 469, 782 |
| AspS9I | GGNCC | 4 cut(s) | 580, 634, 968, 1018 |
| AsuHPI | GGTGA | 5 cut(s) | 388, 608, 1579, 1669, 1719 |
| AsuII | TTCGAA | 1 cut(s) | 149 |
| AsuNHI | GCTAGC | 1 cut(s) | 472 |
| AvaII | GGWCC | 4 cut(s) | 580, 634, 968, 1018 |
| BalI | TGGCCA | 1 cut(s) | 485 |
| BanII | GRGCYC | 1 cut(s) | 363 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1456, 1488 |
| Bbv12I | GWGCWC | 1 cut(s) | 363 |
| BbvI | GCAGC | 9 cut(s) | 253, 337, 481, 527, 542, 841, 863, 1237, 1265 |
| BccI | CCATC | 6 cut(s) | 236, 397, 571, 721, 941, 1648 |
| BciT130I | CCWGG | 2 cut(s) | 482, 723 |
| BciVI | GTATCC | 2 cut(s) | 189, 1435 |
| BclI | TGATCA | 1 cut(s) | 1042 |
| BcoDI | GTCTC | 2 cut(s) | 907, 1115 |
| BfaI | CTAG | 3 cut(s) | 473, 542, 1065 |
| BfmI | CTRYAG | 3 cut(s) | 855, 1200, 1251 |
| BfuI | GTATCC | 2 cut(s) | 189, 1435 |
| BglII | AGATCT | 3 cut(s) | 13, 836, 1115 |
| BisI | GCNGC | 9 cut(s) | 267, 351, 470, 516, 556, 852, 855, 1251, 1254 |
| BlsI | GCNGC | 9 cut(s) | 268, 352, 471, 517, 557, 853, 856, 1252, 1255 |
| Bme1390I | CCNGG | 2 cut(s) | 482, 723 |
| Bme18I | GGWCC | 4 cut(s) | 580, 634, 968, 1018 |
| BmgT120I | GGNCC | 4 cut(s) | 580, 634, 968, 1018 |
| BmiI | GGNNCC | 1 cut(s) | 1020 |
| BmrFI | CCNGG | 2 cut(s) | 482, 723 |
| BmrI | ACTGGG | 3 cut(s) | 221, 282, 1047 |
| BmsI | GCATC | 3 cut(s) | 15, 79, 454 |
| BmtI | GCTAGC | 1 cut(s) | 476 |
| BmuI | ACTGGG | 3 cut(s) | 221, 282, 1047 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1072 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 370, 402 |
| Bpu14I | TTCGAA | 1 cut(s) | 149 |
| Bsa29I | ATCGAT | 1 cut(s) | 1485 |
| BsaBI | GATNNNNATC | 1 cut(s) | 537 |
| BsaI | GGTCTC | 1 cut(s) | 907 |
| BsaJI | CCNNGG | 2 cut(s) | 750, 964 |
| BsaWI | WCCGGW | 1 cut(s) | 192 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1297, 1327 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 99, 232, 728, 1333 |
| Bse118I | RCCGGY | 1 cut(s) | 68 |
| Bse1I | ACTGG | 7 cut(s) | 227, 277, 486, 1053, 1059, 1217, 1461 |
| Bse3DI | GCAATG | 4 cut(s) | 256, 324, 598, 993 |
| Bse8I | GATNNNNATC | 1 cut(s) | 537 |
| BseBI | CCWGG | 2 cut(s) | 482, 723 |
| BseCI | ATCGAT | 1 cut(s) | 1485 |
| BseDI | CCNNGG | 2 cut(s) | 750, 964 |
| BseGI | GGATG | 3 cut(s) | 283, 1531, 1659 |
| BseJI | GATNNNNATC | 1 cut(s) | 537 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 99, 232, 728, 1333 |
| BseMI | GCAATG | 4 cut(s) | 256, 324, 598, 993 |
| BseMII | CTCAG | 5 cut(s) | 34, 410, 519, 1110, 1628 |
| BseNI | ACTGG | 7 cut(s) | 227, 277, 486, 1053, 1059, 1217, 1461 |
| BseRI | GAGGAG | 1 cut(s) | 8 |
| BseXI | GCAGC | 9 cut(s) | 253, 337, 481, 527, 542, 841, 863, 1237, 1265 |
| BsgI | GTGCAG | 1 cut(s) | 1122 |
| Bsh1236I | CGCG | 1 cut(s) | 780 |
| BshFI | GGCC | 3 cut(s) | 485, 1037, 1160 |
| BshVI | ATCGAT | 1 cut(s) | 1485 |
| BsiHKAI | GWGCWC | 1 cut(s) | 363 |
| BsiSI | CCGG | 2 cut(s) | 69, 193 |
| BslFI | GGGAC | 1 cut(s) | 925 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 99, 232, 728, 1333 |
| BsmAI | GTCTC | 2 cut(s) | 907, 1115 |
| BsmFI | GGGAC | 1 cut(s) | 925 |
| BsnI | GGCC | 3 cut(s) | 485, 1037, 1160 |
| Bso31I | GGTCTC | 1 cut(s) | 907 |
| Bsp119I | TTCGAA | 1 cut(s) | 149 |
| Bsp1286I | GDGCHC | 1 cut(s) | 363 |
| Bsp143I | GATC | 9 cut(s) | 13, 422, 538, 775, 836, 1042, 1078, 1115, 1384 |
| BspACI | CCGC | 2 cut(s) | 374, 637 |
| BspANI | GGCC | 3 cut(s) | 485, 1037, 1160 |
| BspCNI | CTCAG | 5 cut(s) | 33, 411, 520, 1111, 1627 |
| BspDI | ATCGAT | 1 cut(s) | 1485 |
| BspFNI | CGCG | 1 cut(s) | 780 |
| BspHI | TCATGA | 1 cut(s) | 307 |
| BspLI | GGNNCC | 1 cut(s) | 1020 |
| BspMAI | CTGCAG | 2 cut(s) | 859, 1255 |
| BspOI | GCTAGC | 1 cut(s) | 476 |
| BspPI | GGATC | 3 cut(s) | 417, 1073, 1392 |
| BspT104I | TTCGAA | 1 cut(s) | 149 |
| BspTNI | GGTCTC | 1 cut(s) | 907 |
| BsrDI | GCAATG | 4 cut(s) | 256, 324, 598, 993 |
| BsrFI | RCCGGY | 1 cut(s) | 68 |
| BsrI | ACTGG | 7 cut(s) | 227, 277, 486, 1053, 1059, 1217, 1461 |
| BssAI | RCCGGY | 1 cut(s) | 68 |
| BssECI | CCNNGG | 2 cut(s) | 750, 964 |
| BssMI | GATC | 9 cut(s) | 13, 422, 538, 775, 836, 1042, 1078, 1115, 1384 |
| BssT1I | CCWWGG | 2 cut(s) | 750, 964 |
| Bst2UI | CCWGG | 2 cut(s) | 482, 723 |
| Bst4CI | ACNGT | 1 cut(s) | 1132 |
| Bst6I | CTCTTC | 1 cut(s) | 1670 |
| BstBI | TTCGAA | 1 cut(s) | 149 |
| BstC8I | GCNNGC | 5 cut(s) | 70, 474, 697, 870, 1345 |
| BstDEI | CTNAG | 8 cut(s) | 20, 419, 528, 759, 772, 1119, 1614, 1632 |
| BstF5I | GGATG | 3 cut(s) | 283, 1531, 1659 |
| BstFNI | CGCG | 1 cut(s) | 780 |
| BstHHI | GCGC | 2 cut(s) | 469, 782 |
| BstKTI | GATC | 9 cut(s) | 16, 425, 541, 778, 839, 1045, 1081, 1118, 1387 |
| BstMAI | GTCTC | 2 cut(s) | 907, 1115 |
| BstMBI | GATC | 9 cut(s) | 13, 422, 538, 775, 836, 1042, 1078, 1115, 1384 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 473, 482, 1642 |
| BstNI | CCWGG | 2 cut(s) | 482, 723 |
| BstNSI | RCATGY | 1 cut(s) | 872 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1072 |
| BstSCI | CCNGG | 2 cut(s) | 480, 721 |
| BstSFI | CTRYAG | 3 cut(s) | 855, 1200, 1251 |
| BstUI | CGCG | 1 cut(s) | 780 |
| BstV1I | GCAGC | 9 cut(s) | 253, 337, 481, 527, 542, 841, 863, 1237, 1265 |
| BstX2I | RGATCY | 5 cut(s) | 13, 422, 836, 1078, 1115 |
| BstYI | RGATCY | 5 cut(s) | 13, 422, 836, 1078, 1115 |
| Bsu15I | ATCGAT | 1 cut(s) | 1485 |
| BsuI | GTATCC | 2 cut(s) | 189, 1435 |
| BsuRI | GGCC | 3 cut(s) | 485, 1037, 1160 |
| BsuTUI | ATCGAT | 1 cut(s) | 1485 |
| BtsCI | GGATG | 3 cut(s) | 283, 1531, 1659 |
| BtsIMutI | CAGTG | 3 cut(s) | 234, 270, 525 |
| Cac8I | GCNNGC | 5 cut(s) | 70, 474, 697, 870, 1345 |
| CciI | TCATGA | 1 cut(s) | 307 |
| CfoI | GCGC | 2 cut(s) | 469, 782 |
| Cfr10I | RCCGGY | 1 cut(s) | 68 |
| Cfr13I | GGNCC | 4 cut(s) | 580, 634, 968, 1018 |
| ClaI | ATCGAT | 1 cut(s) | 1485 |
| Csp6I | GTAC | 1 cut(s) | 1305 |
| CviAII | CATG | 8 cut(s) | 99, 123, 130, 215, 258, 308, 401, 869 |
| CviQI | GTAC | 1 cut(s) | 1305 |
| DdeI | CTNAG | 8 cut(s) | 20, 419, 528, 759, 772, 1119, 1614, 1632 |
| DpnI | GATC | 9 cut(s) | 15, 424, 540, 777, 838, 1044, 1080, 1117, 1386 |
| DpnII | GATC | 9 cut(s) | 13, 422, 538, 775, 836, 1042, 1078, 1115, 1384 |
| EaeI | YGGCCR | 1 cut(s) | 483 |
| Eam1104I | CTCTTC | 1 cut(s) | 1670 |
| EarI | CTCTTC | 1 cut(s) | 1670 |
| Ecl136II | GAGCTC | 1 cut(s) | 361 |
| Eco130I | CCWWGG | 2 cut(s) | 750, 964 |
| Eco147I | AGGCCT | 1 cut(s) | 1037 |
| Eco24I | GRGCYC | 1 cut(s) | 363 |
| Eco31I | GGTCTC | 1 cut(s) | 907 |
| Eco47I | GGWCC | 4 cut(s) | 580, 634, 968, 1018 |
| Eco53kI | GAGCTC | 1 cut(s) | 361 |
| Eco57I | CTGAAG | 4 cut(s) | 843, 1026, 1575, 1590 |
| EcoICRI | GAGCTC | 1 cut(s) | 361 |
| EcoRI | GAATTC | 1 cut(s) | 145 |
| EcoRII | CCWGG | 2 cut(s) | 480, 721 |
| EcoT14I | CCWWGG | 2 cut(s) | 750, 964 |
| EcoT38I | GRGCYC | 1 cut(s) | 363 |
| ErhI | CCWWGG | 2 cut(s) | 750, 964 |
| FaeI | CATG | 8 cut(s) | 102, 126, 133, 218, 261, 311, 404, 872 |
| FaqI | GGGAC | 1 cut(s) | 925 |
| FatI | CATG | 8 cut(s) | 98, 122, 129, 214, 257, 307, 400, 868 |
| FauNDI | CATATG | 4 cut(s) | 201, 454, 550, 909 |
| FbaI | TGATCA | 1 cut(s) | 1042 |
| Fnu4HI | GCNGC | 9 cut(s) | 267, 351, 470, 516, 556, 852, 855, 1251, 1254 |
| FokI | GGATG | 3 cut(s) | 290, 1538, 1666 |
| FriOI | GRGCYC | 1 cut(s) | 363 |
| Fsp4HI | GCNGC | 9 cut(s) | 267, 351, 470, 516, 556, 852, 855, 1251, 1254 |
| FspBI | CTAG | 3 cut(s) | 473, 542, 1065 |
| FspI | TGCGCA | 1 cut(s) | 468 |
| GlaI | GCGC | 2 cut(s) | 468, 781 |
| GluI | GCNGC | 9 cut(s) | 267, 351, 470, 516, 556, 852, 855, 1251, 1254 |
| HaeIII | GGCC | 3 cut(s) | 485, 1037, 1160 |
| HapII | CCGG | 2 cut(s) | 69, 193 |
| HhaI | GCGC | 2 cut(s) | 469, 782 |
| Hin1II | CATG | 8 cut(s) | 102, 126, 133, 218, 261, 311, 404, 872 |
| Hin6I | GCGC | 2 cut(s) | 467, 780 |
| HinP1I | GCGC | 2 cut(s) | 467, 780 |
| HindIII | AAGCTT | 1 cut(s) | 741 |
| HinfI | GANTC | 7 cut(s) | 24, 415, 884, 938, 1213, 1586, 1610 |
| HpaII | CCGG | 2 cut(s) | 69, 193 |
| HphI | GGTGA | 5 cut(s) | 388, 608, 1579, 1669, 1719 |
| Hpy166II | GTNNAC | 1 cut(s) | 634 |
| Hpy188III | TCNNGA | 8 cut(s) | 58, 308, 491, 1065, 1357, 1550, 1616, 1714 |
| Hpy8I | GTNNAC | 1 cut(s) | 634 |
| HpyCH4III | ACNGT | 1 cut(s) | 1132 |
| HpyCH4IV | ACGT | 1 cut(s) | 1467 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 473, 482, 1642 |
| HpyF3I | CTNAG | 8 cut(s) | 20, 419, 528, 759, 772, 1119, 1614, 1632 |
| HpySE526I | ACGT | 1 cut(s) | 1467 |
| Hsp92II | CATG | 8 cut(s) | 102, 126, 133, 218, 261, 311, 404, 872 |
| HspAI | GCGC | 2 cut(s) | 467, 780 |
| KroI | GCCGGC | 1 cut(s) | 68 |
| KroNI | GCCGGC | 1 cut(s) | 70 |
| Ksp22I | TGATCA | 1 cut(s) | 1042 |
| Kzo9I | GATC | 9 cut(s) | 13, 422, 538, 775, 836, 1042, 1078, 1115, 1384 |
| LmnI | GCTCC | 4 cut(s) | 113, 133, 454, 1318 |
| Lsp1109I | GCAGC | 9 cut(s) | 253, 337, 481, 527, 542, 841, 863, 1237, 1265 |
| LweI | GCATC | 3 cut(s) | 15, 79, 454 |
| MaeI | CTAG | 3 cut(s) | 473, 542, 1065 |
| MaeII | ACGT | 1 cut(s) | 1467 |
| MaeIII | GTNAC | 6 cut(s) | 382, 596, 603, 1294, 1463, 1567 |
| MalI | GATC | 9 cut(s) | 15, 424, 540, 777, 838, 1044, 1080, 1117, 1386 |
| MboI | GATC | 9 cut(s) | 13, 422, 538, 775, 836, 1042, 1078, 1115, 1384 |
| MboII | GAAGA | 6 cut(s) | 310, 344, 836, 1464, 1581, 1687 |
| MfeI | CAATTG | 2 cut(s) | 999, 1416 |
| MflI | RGATCY | 5 cut(s) | 13, 422, 836, 1078, 1115 |
| MhlI | GDGCHC | 1 cut(s) | 363 |
| MlsI | TGGCCA | 1 cut(s) | 485 |
| MluNI | TGGCCA | 1 cut(s) | 485 |
| MlyI | GAGTC | 2 cut(s) | 878, 947 |
| MnlI | CCTC | 7 cut(s) | 29, 363, 451, 523, 1027, 1465, 1644 |
| Mox20I | TGGCCA | 1 cut(s) | 485 |
| MroNI | GCCGGC | 1 cut(s) | 68 |
| MscI | TGGCCA | 1 cut(s) | 485 |
| MseI | TTAA | 4 cut(s) | 573, 624, 1025, 1086 |
| MslI | CAYNNNNRTG | 3 cut(s) | 121, 1524, 1732 |
| Msp20I | TGGCCA | 1 cut(s) | 485 |
| MspA1I | CMGCKG | 2 cut(s) | 854, 1686 |
| MspI | CCGG | 2 cut(s) | 69, 193 |
| MspR9I | CCNGG | 2 cut(s) | 482, 723 |
| MunI | CAATTG | 2 cut(s) | 999, 1416 |
| MvaI | CCWGG | 2 cut(s) | 482, 723 |
| MvnI | CGCG | 1 cut(s) | 780 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 473, 482, 1642 |
| NaeI | GCCGGC | 1 cut(s) | 70 |
| NdeI | CATATG | 4 cut(s) | 201, 454, 550, 909 |
| NdeII | GATC | 9 cut(s) | 13, 422, 538, 775, 836, 1042, 1078, 1115, 1384 |
| NgoMIV | GCCGGC | 1 cut(s) | 68 |
| NheI | GCTAGC | 1 cut(s) | 472 |
| NlaIII | CATG | 8 cut(s) | 102, 126, 133, 218, 261, 311, 404, 872 |
| NlaIV | GGNNCC | 1 cut(s) | 1020 |
| NmuCI | GTSAC | 3 cut(s) | 596, 1294, 1567 |
| NsbI | TGCGCA | 1 cut(s) | 468 |
| NspI | RCATGY | 1 cut(s) | 872 |
| NspV | TTCGAA | 1 cut(s) | 149 |
| PaeI | GCATGC | 1 cut(s) | 872 |
| PagI | TCATGA | 1 cut(s) | 307 |
| PceI | AGGCCT | 1 cut(s) | 1037 |
| PdiI | GCCGGC | 1 cut(s) | 70 |
| PfeI | GAWTC | 5 cut(s) | 24, 415, 1213, 1586, 1610 |
| PfoI | TCCNGGA | 1 cut(s) | 721 |
| PkrI | GCNGC | 9 cut(s) | 268, 352, 471, 517, 557, 853, 856, 1252, 1255 |
| PleI | GAGTC | 2 cut(s) | 878, 946 |
| PpsI | GAGTC | 2 cut(s) | 878, 946 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1072 |
| Psp124BI | GAGCTC | 1 cut(s) | 363 |
| Psp6I | CCWGG | 2 cut(s) | 480, 721 |
| PspGI | CCWGG | 2 cut(s) | 480, 721 |
| PspN4I | GGNNCC | 1 cut(s) | 1020 |
| PspPI | GGNCC | 4 cut(s) | 580, 634, 968, 1018 |
| PstI | CTGCAG | 2 cut(s) | 859, 1255 |
| PsuI | RGATCY | 5 cut(s) | 13, 422, 836, 1078, 1115 |
| PvuII | CAGCTG | 2 cut(s) | 854, 1686 |
| RsaI | GTAC | 1 cut(s) | 1306 |
| RsaNI | GTAC | 1 cut(s) | 1305 |
| RseI | CAYNNNNRTG | 3 cut(s) | 121, 1524, 1732 |
| SacI | GAGCTC | 1 cut(s) | 363 |
| SaqAI | TTAA | 4 cut(s) | 573, 624, 1025, 1086 |
| SatI | GCNGC | 9 cut(s) | 267, 351, 470, 516, 556, 852, 855, 1251, 1254 |
| Sau3AI | GATC | 9 cut(s) | 13, 422, 538, 775, 836, 1042, 1078, 1115, 1384 |
| Sau96I | GGNCC | 4 cut(s) | 580, 634, 968, 1018 |
| SchI | GAGTC | 2 cut(s) | 878, 947 |
| ScrFI | CCNGG | 2 cut(s) | 482, 723 |
| SduI | GDGCHC | 1 cut(s) | 363 |
| SfaNI | GCATC | 3 cut(s) | 15, 79, 454 |
| SfcI | CTRYAG | 3 cut(s) | 855, 1200, 1251 |
| SfuI | TTCGAA | 1 cut(s) | 149 |
| SinI | GGWCC | 4 cut(s) | 580, 634, 968, 1018 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 121, 1524, 1732 |
| SphI | GCATGC | 1 cut(s) | 872 |
| SseBI | AGGCCT | 1 cut(s) | 1037 |
| SsiI | CCGC | 2 cut(s) | 374, 637 |
| SspMI | CTAG | 3 cut(s) | 473, 542, 1065 |
| SstI | GAGCTC | 1 cut(s) | 363 |
| StuI | AGGCCT | 1 cut(s) | 1037 |
| StyD4I | CCNGG | 2 cut(s) | 480, 721 |
| StyI | CCWWGG | 2 cut(s) | 750, 964 |
| TaaI | ACNGT | 1 cut(s) | 1132 |
| TaiI | ACGT | 1 cut(s) | 1470 |
| TaqI | TCGA | 3 cut(s) | 149, 1280, 1485 |
| TaqII | GACCGA | 1 cut(s) | 1062 |
| TfiI | GAWTC | 5 cut(s) | 24, 415, 1213, 1586, 1610 |
| Tru1I | TTAA | 4 cut(s) | 573, 624, 1025, 1086 |
| Tru9I | TTAA | 4 cut(s) | 573, 624, 1025, 1086 |
| TscAI | CASTG | 3 cut(s) | 234, 277, 532 |
| TseFI | GTSAC | 3 cut(s) | 596, 1294, 1567 |
| TseI | GCWGC | 9 cut(s) | 266, 350, 469, 515, 555, 851, 854, 1250, 1253 |
| Tsp45I | GTSAC | 3 cut(s) | 596, 1294, 1567 |
| TspRI | CASTG | 3 cut(s) | 234, 277, 532 |
| VpaK11BI | GGWCC | 4 cut(s) | 580, 634, 968, 1018 |
| XapI | RAATTY | 6 cut(s) | 145, 302, 437, 655, 1627, 1717 |
| XbaI | TCTAGA | 1 cut(s) | 1064 |
| XceI | RCATGY | 1 cut(s) | 872 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 590 |
| XspI | CTAG | 3 cut(s) | 473, 542, 1065 |