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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 233 |
| AccB1I | GGYRCC | 1 cut(s) | 520 |
| AcoI | YGGCCR | 1 cut(s) | 31 |
| AcsI | RAATTY | 2 cut(s) | 91, 551 |
| AfaI | GTAC | 3 cut(s) | 178, 367, 546 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 356 |
| AjnI | CCWGG | 1 cut(s) | 435 |
| AluBI | AGCT | 7 cut(s) | 156, 162, 325, 343, 536, 560, 578 |
| AluI | AGCT | 7 cut(s) | 156, 162, 325, 343, 536, 560, 578 |
| Alw21I | GWGCWC | 1 cut(s) | 202 |
| Alw26I | GTCTC | 2 cut(s) | 116, 434 |
| Alw44I | GTGCAC | 1 cut(s) | 198 |
| AoxI | GGCC | 1 cut(s) | 31 |
| ApaLI | GTGCAC | 1 cut(s) | 198 |
| ApeKI | GCWGC | 5 cut(s) | 156, 159, 533, 557, 571 |
| ApoI | RAATTY | 2 cut(s) | 91, 551 |
| AspLEI | GCGC | 1 cut(s) | 234 |
| AsuHPI | GGTGA | 1 cut(s) | 182 |
| BaeGI | GKGCMC | 1 cut(s) | 202 |
| BalI | TGGCCA | 1 cut(s) | 33 |
| BanI | GGYRCC | 1 cut(s) | 520 |
| BanII | GRGCYC | 1 cut(s) | 76 |
| Bbv12I | GWGCWC | 1 cut(s) | 202 |
| BbvI | GCAGC | 5 cut(s) | 143, 171, 545, 569, 583 |
| BccI | CCATC | 3 cut(s) | 99, 358, 500 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 522, 556 |
| BciT130I | CCWGG | 1 cut(s) | 437 |
| BcoDI | GTCTC | 2 cut(s) | 116, 434 |
| BfaI | CTAG | 2 cut(s) | 413, 589 |
| BfmI | CTRYAG | 2 cut(s) | 157, 387 |
| BisI | GCNGC | 5 cut(s) | 157, 160, 534, 558, 572 |
| BlsI | GCNGC | 5 cut(s) | 158, 161, 535, 559, 573 |
| Bme1390I | CCNGG | 1 cut(s) | 437 |
| BmiI | GGNNCC | 2 cut(s) | 303, 522 |
| BmrFI | CCNGG | 1 cut(s) | 437 |
| BmsI | GCATC | 2 cut(s) | 208, 406 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 94, 126 |
| BpuEI | CTTGAG | 2 cut(s) | 140, 347 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 356 |
| Bse1I | ACTGG | 2 cut(s) | 239, 552 |
| BseBI | CCWGG | 1 cut(s) | 437 |
| BseGI | GGATG | 1 cut(s) | 511 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 356 |
| BseMII | CTCAG | 1 cut(s) | 345 |
| BseNI | ACTGG | 2 cut(s) | 239, 552 |
| BseRI | GAGGAG | 1 cut(s) | 344 |
| BseSI | GKGCMC | 1 cut(s) | 202 |
| BseXI | GCAGC | 5 cut(s) | 143, 171, 545, 569, 583 |
| BsgI | GTGCAG | 1 cut(s) | 590 |
| BshFI | GGCC | 1 cut(s) | 33 |
| BshNI | GGYRCC | 1 cut(s) | 520 |
| BsiHKAI | GWGCWC | 1 cut(s) | 202 |
| BslFI | GGGAC | 2 cut(s) | 172, 395 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 356 |
| BsmAI | GTCTC | 2 cut(s) | 116, 434 |
| BsmBI | CGTCTC | 1 cut(s) | 434 |
| BsmFI | GGGAC | 2 cut(s) | 172, 395 |
| BsmI | GAATGC | 1 cut(s) | 403 |
| BsnI | GGCC | 1 cut(s) | 33 |
| Bsp1286I | GDGCHC | 2 cut(s) | 76, 202 |
| Bsp1407I | TGTACA | 1 cut(s) | 365 |
| Bsp143I | GATC | 1 cut(s) | 172 |
| BspANI | GGCC | 1 cut(s) | 33 |
| BspCNI | CTCAG | 1 cut(s) | 346 |
| BspLI | GGNNCC | 2 cut(s) | 303, 522 |
| BspMAI | CTGCAG | 1 cut(s) | 161 |
| BspT107I | GGYRCC | 1 cut(s) | 520 |
| BsrGI | TGTACA | 1 cut(s) | 365 |
| BsrI | ACTGG | 2 cut(s) | 239, 552 |
| BssMI | GATC | 1 cut(s) | 172 |
| Bst2UI | CCWGG | 1 cut(s) | 437 |
| Bst4CI | ACNGT | 2 cut(s) | 127, 424 |
| BstAUI | TGTACA | 1 cut(s) | 365 |
| BstC8I | GCNNGC | 2 cut(s) | 512, 576 |
| BstDEI | CTNAG | 1 cut(s) | 354 |
| BstF5I | GGATG | 1 cut(s) | 511 |
| BstHHI | GCGC | 1 cut(s) | 234 |
| BstKTI | GATC | 1 cut(s) | 175 |
| BstMAI | GTCTC | 2 cut(s) | 116, 434 |
| BstMBI | GATC | 1 cut(s) | 172 |
| BstNI | CCWGG | 1 cut(s) | 437 |
| BstSCI | CCNGG | 1 cut(s) | 435 |
| BstSFI | CTRYAG | 2 cut(s) | 157, 387 |
| BstSLI | GKGCMC | 1 cut(s) | 202 |
| BstV1I | GCAGC | 5 cut(s) | 143, 171, 545, 569, 583 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 55 |
| BsuRI | GGCC | 1 cut(s) | 33 |
| BtsCI | GGATG | 1 cut(s) | 511 |
| BtsIMutI | CAGTG | 1 cut(s) | 246 |
| Cac8I | GCNNGC | 2 cut(s) | 512, 576 |
| CfoI | GCGC | 1 cut(s) | 234 |
| Csp6I | GTAC | 3 cut(s) | 177, 366, 545 |
| CviAII | CATG | 1 cut(s) | 149 |
| CviQI | GTAC | 3 cut(s) | 177, 366, 545 |
| DdeI | CTNAG | 1 cut(s) | 354 |
| DpnI | GATC | 1 cut(s) | 174 |
| DpnII | GATC | 1 cut(s) | 172 |
| DraI | TTTAAA | 1 cut(s) | 166 |
| EaeI | YGGCCR | 1 cut(s) | 31 |
| Eco24I | GRGCYC | 1 cut(s) | 76 |
| EcoRII | CCWGG | 1 cut(s) | 435 |
| EcoT38I | GRGCYC | 1 cut(s) | 76 |
| Esp3I | CGTCTC | 1 cut(s) | 434 |
| FaeI | CATG | 1 cut(s) | 152 |
| FaiI | YATR | 6 cut(s) | 21, 50, 150, 347, 362, 566 |
| FaqI | GGGAC | 2 cut(s) | 172, 395 |
| FatI | CATG | 1 cut(s) | 148 |
| Fnu4HI | GCNGC | 5 cut(s) | 157, 160, 534, 558, 572 |
| FokI | GGATG | 1 cut(s) | 518 |
| FriOI | GRGCYC | 1 cut(s) | 76 |
| Fsp4HI | GCNGC | 5 cut(s) | 157, 160, 534, 558, 572 |
| FspBI | CTAG | 2 cut(s) | 413, 589 |
| FspI | TGCGCA | 1 cut(s) | 233 |
| GlaI | GCGC | 1 cut(s) | 233 |
| GluI | GCNGC | 5 cut(s) | 157, 160, 534, 558, 572 |
| HaeIII | GGCC | 1 cut(s) | 33 |
| HhaI | GCGC | 1 cut(s) | 234 |
| Hin1II | CATG | 1 cut(s) | 152 |
| Hin6I | GCGC | 1 cut(s) | 232 |
| HinP1I | GCGC | 1 cut(s) | 232 |
| HincII | GTYRAC | 1 cut(s) | 433 |
| HindII | GTYRAC | 1 cut(s) | 433 |
| HinfI | GANTC | 4 cut(s) | 5, 109, 383, 526 |
| HphI | GGTGA | 1 cut(s) | 182 |
| Hpy166II | GTNNAC | 4 cut(s) | 200, 290, 366, 433 |
| Hpy188I | TCNGA | 3 cut(s) | 274, 306, 355 |
| Hpy8I | GTNNAC | 4 cut(s) | 200, 290, 366, 433 |
| HpyAV | CCTTC | 2 cut(s) | 271, 578 |
| HpyCH4III | ACNGT | 2 cut(s) | 127, 424 |
| HpyCH4V | TGCA | 8 cut(s) | 148, 159, 200, 338, 373, 401, 557, 571 |
| HpyF3I | CTNAG | 1 cut(s) | 354 |
| Hsp92II | CATG | 1 cut(s) | 152 |
| HspAI | GCGC | 1 cut(s) | 232 |
| Kzo9I | GATC | 1 cut(s) | 172 |
| LmnI | GCTCC | 1 cut(s) | 153 |
| LpnPI | CCDG | 8 cut(s) | 193, 252, 363, 422, 449, 467, 515, 533 |
| Lsp1109I | GCAGC | 5 cut(s) | 143, 171, 545, 569, 583 |
| LweI | GCATC | 2 cut(s) | 208, 406 |
| MaeI | CTAG | 2 cut(s) | 413, 589 |
| MaeIII | GTNAC | 1 cut(s) | 451 |
| MalI | GATC | 1 cut(s) | 174 |
| MboI | GATC | 1 cut(s) | 172 |
| MhlI | GDGCHC | 2 cut(s) | 76, 202 |
| MlsI | TGGCCA | 1 cut(s) | 33 |
| MluCI | AATT | 4 cut(s) | 12, 91, 538, 551 |
| MluNI | TGGCCA | 1 cut(s) | 33 |
| MlyI | GAGTC | 2 cut(s) | 103, 377 |
| MnlI | CCTC | 4 cut(s) | 200, 322, 325, 349 |
| Mox20I | TGGCCA | 1 cut(s) | 33 |
| MscI | TGGCCA | 1 cut(s) | 33 |
| MseI | TTAA | 1 cut(s) | 165 |
| MslI | CAYNNNNRTG | 1 cut(s) | 53 |
| Msp20I | TGGCCA | 1 cut(s) | 33 |
| MspR9I | CCNGG | 1 cut(s) | 437 |
| Mva1269I | GAATGC | 1 cut(s) | 403 |
| MvaI | CCWGG | 1 cut(s) | 437 |
| NdeII | GATC | 1 cut(s) | 172 |
| NlaIII | CATG | 1 cut(s) | 152 |
| NlaIV | GGNNCC | 2 cut(s) | 303, 522 |
| NmuCI | GTSAC | 1 cut(s) | 451 |
| NsbI | TGCGCA | 1 cut(s) | 233 |
| PctI | GAATGC | 1 cut(s) | 403 |
| PfeI | GAWTC | 2 cut(s) | 5, 526 |
| PkrI | GCNGC | 5 cut(s) | 158, 161, 535, 559, 573 |
| PleI | GAGTC | 2 cut(s) | 103, 377 |
| PpsI | GAGTC | 2 cut(s) | 103, 377 |
| Psp6I | CCWGG | 1 cut(s) | 435 |
| PspGI | CCWGG | 1 cut(s) | 435 |
| PspN4I | GGNNCC | 2 cut(s) | 303, 522 |
| PstI | CTGCAG | 1 cut(s) | 161 |
| RsaI | GTAC | 3 cut(s) | 178, 367, 546 |
| RsaNI | GTAC | 3 cut(s) | 177, 366, 545 |
| RseI | CAYNNNNRTG | 1 cut(s) | 53 |
| SaqAI | TTAA | 1 cut(s) | 165 |
| SatI | GCNGC | 5 cut(s) | 157, 160, 534, 558, 572 |
| Sau3AI | GATC | 1 cut(s) | 172 |
| SchI | GAGTC | 2 cut(s) | 103, 377 |
| ScrFI | CCNGG | 1 cut(s) | 437 |
| SduI | GDGCHC | 2 cut(s) | 76, 202 |
| SfaNI | GCATC | 2 cut(s) | 208, 406 |
| SfcI | CTRYAG | 2 cut(s) | 157, 387 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 53 |
| SmlI | CTYRAG | 2 cut(s) | 119, 326 |
| SmoI | CTYRAG | 2 cut(s) | 119, 326 |
| Sse9I | AATT | 4 cut(s) | 12, 91, 538, 551 |
| SspI | AATATT | 1 cut(s) | 319 |
| SspMI | CTAG | 2 cut(s) | 413, 589 |
| StyD4I | CCNGG | 1 cut(s) | 435 |
| TaaI | ACNGT | 2 cut(s) | 127, 424 |
| TasI | AATT | 4 cut(s) | 12, 91, 538, 551 |
| TatI | WGTACW | 1 cut(s) | 365 |
| TfiI | GAWTC | 2 cut(s) | 5, 526 |
| Tru1I | TTAA | 1 cut(s) | 165 |
| Tru9I | TTAA | 1 cut(s) | 165 |
| TscAI | CASTG | 1 cut(s) | 246 |
| TseFI | GTSAC | 1 cut(s) | 451 |
| TseI | GCWGC | 5 cut(s) | 156, 159, 533, 557, 571 |
| Tsp45I | GTSAC | 1 cut(s) | 451 |
| TspRI | CASTG | 1 cut(s) | 246 |
| VneI | GTGCAC | 1 cut(s) | 198 |
| XapI | RAATTY | 2 cut(s) | 91, 551 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 26 |
| XspI | CTAG | 2 cut(s) | 413, 589 |