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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 235 |
| AccB1I | GGYRCC | 1 cut(s) | 235 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 313 |
| AciI | CCGC | 1 cut(s) | 524 |
| AclI | AACGTT | 1 cut(s) | 327 |
| AclWI | GGATC | 1 cut(s) | 114 |
| AfaI | GTAC | 4 cut(s) | 133, 237, 312, 472 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 313, 406 |
| AflIII | ACRYGT | 1 cut(s) | 172 |
| AgsI | TTSAA | 2 cut(s) | 101, 123 |
| AjnI | CCWGG | 1 cut(s) | 336 |
| AluBI | AGCT | 6 cut(s) | 14, 75, 222, 230, 517, 548 |
| AluI | AGCT | 6 cut(s) | 14, 75, 222, 230, 517, 548 |
| Alw26I | GTCTC | 3 cut(s) | 146, 450, 581 |
| AlwI | GGATC | 1 cut(s) | 114 |
| Ama87I | CYCGRG | 2 cut(s) | 225, 568 |
| AoxI | GGCC | 1 cut(s) | 425 |
| Asp718I | GGTACC | 1 cut(s) | 235 |
| AsuC2I | CCSGG | 2 cut(s) | 569, 570 |
| AvaI | CYCGRG | 2 cut(s) | 225, 568 |
| BanI | GGYRCC | 1 cut(s) | 235 |
| BccI | CCATC | 2 cut(s) | 271, 458 |
| BciT130I | CCWGG | 1 cut(s) | 338 |
| BcnI | CCSGG | 2 cut(s) | 569, 570 |
| BcoDI | GTCTC | 3 cut(s) | 146, 450, 581 |
| BmcAI | AGTACT | 1 cut(s) | 312 |
| Bme1390I | CCNGG | 3 cut(s) | 338, 569, 570 |
| BmeT110I | CYCGRG | 2 cut(s) | 225, 568 |
| BmiI | GGNNCC | 1 cut(s) | 237 |
| BmrFI | CCNGG | 3 cut(s) | 338, 569, 570 |
| BmsI | GCATC | 1 cut(s) | 440 |
| BpmI | CTGGAG | 1 cut(s) | 56 |
| BpuEI | CTTGAG | 1 cut(s) | 503 |
| BpuMI | CCSGG | 2 cut(s) | 569, 570 |
| BsaI | GGTCTC | 1 cut(s) | 581 |
| BsaJI | CCNNGG | 2 cut(s) | 567, 568 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 313, 406 |
| Bse1I | ACTGG | 2 cut(s) | 318, 597 |
| BseBI | CCWGG | 1 cut(s) | 338 |
| BseDI | CCNNGG | 2 cut(s) | 567, 568 |
| BseGI | GGATG | 4 cut(s) | 217, 322, 469, 502 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 313, 406 |
| BseNI | ACTGG | 2 cut(s) | 318, 597 |
| BshFI | GGCC | 1 cut(s) | 427 |
| BshNI | GGYRCC | 1 cut(s) | 235 |
| BsiHKCI | CYCGRG | 2 cut(s) | 225, 568 |
| BsiSI | CCGG | 1 cut(s) | 569 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 313, 406 |
| BsmAI | GTCTC | 3 cut(s) | 146, 450, 581 |
| BsnI | GGCC | 1 cut(s) | 427 |
| Bso31I | GGTCTC | 1 cut(s) | 581 |
| BsoBI | CYCGRG | 2 cut(s) | 225, 568 |
| Bsp143I | GATC | 2 cut(s) | 106, 354 |
| BspACI | CCGC | 1 cut(s) | 524 |
| BspANI | GGCC | 1 cut(s) | 427 |
| BspHI | TCATGA | 1 cut(s) | 183 |
| BspLI | GGNNCC | 1 cut(s) | 237 |
| BspPI | GGATC | 1 cut(s) | 114 |
| BspT107I | GGYRCC | 1 cut(s) | 235 |
| BspTNI | GGTCTC | 1 cut(s) | 581 |
| BsrI | ACTGG | 2 cut(s) | 318, 597 |
| BssECI | CCNNGG | 2 cut(s) | 567, 568 |
| BssMI | GATC | 2 cut(s) | 106, 354 |
| Bst2UI | CCWGG | 1 cut(s) | 338 |
| Bst4CI | ACNGT | 1 cut(s) | 196 |
| BstC8I | GCNNGC | 1 cut(s) | 429 |
| BstF5I | GGATG | 4 cut(s) | 217, 322, 469, 502 |
| BstKTI | GATC | 2 cut(s) | 109, 357 |
| BstMAI | GTCTC | 3 cut(s) | 146, 450, 581 |
| BstMBI | GATC | 2 cut(s) | 106, 354 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 424, 523 |
| BstNI | CCWGG | 1 cut(s) | 338 |
| BstNSI | RCATGY | 1 cut(s) | 176 |
| BstSCI | CCNGG | 3 cut(s) | 336, 567, 568 |
| BsuRI | GGCC | 1 cut(s) | 427 |
| BtsCI | GGATG | 4 cut(s) | 217, 322, 469, 502 |
| BtsIMutI | CAGTG | 1 cut(s) | 390 |
| Cac8I | GCNNGC | 1 cut(s) | 429 |
| CciI | TCATGA | 1 cut(s) | 183 |
| Cfr9I | CCCGGG | 1 cut(s) | 568 |
| Csp6I | GTAC | 4 cut(s) | 132, 236, 311, 471 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 279, 314 |
| CviAII | CATG | 2 cut(s) | 173, 184 |
| CviQI | GTAC | 4 cut(s) | 132, 236, 311, 471 |
| DpnI | GATC | 2 cut(s) | 108, 356 |
| DpnII | GATC | 2 cut(s) | 106, 354 |
| Eco147I | AGGCCT | 1 cut(s) | 427 |
| Eco31I | GGTCTC | 1 cut(s) | 581 |
| Eco32I | GATATC | 1 cut(s) | 397 |
| Eco88I | CYCGRG | 2 cut(s) | 225, 568 |
| EcoRII | CCWGG | 1 cut(s) | 336 |
| EcoRV | GATATC | 1 cut(s) | 397 |
| FaeI | CATG | 2 cut(s) | 176, 187 |
| FaiI | YATR | 7 cut(s) | 78, 174, 185, 296, 405, 492, 494 |
| FatI | CATG | 2 cut(s) | 172, 183 |
| FauNDI | CATATG | 1 cut(s) | 492 |
| FokI | GGATG | 4 cut(s) | 224, 329, 476, 509 |
| GsuI | CTGGAG | 1 cut(s) | 56 |
| HaeIII | GGCC | 1 cut(s) | 427 |
| HapII | CCGG | 1 cut(s) | 569 |
| Hin1II | CATG | 2 cut(s) | 176, 187 |
| HindIII | AAGCTT | 1 cut(s) | 546 |
| HinfI | GANTC | 1 cut(s) | 487 |
| HpaII | CCGG | 1 cut(s) | 569 |
| Hpy166II | GTNNAC | 2 cut(s) | 325, 537 |
| Hpy188III | TCNNGA | 2 cut(s) | 184, 225 |
| Hpy8I | GTNNAC | 2 cut(s) | 325, 537 |
| HpyAV | CCTTC | 4 cut(s) | 129, 202, 417, 454 |
| HpyCH4III | ACNGT | 1 cut(s) | 196 |
| HpyCH4IV | ACGT | 1 cut(s) | 327 |
| HpyCH4V | TGCA | 4 cut(s) | 19, 80, 290, 431 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 424, 523 |
| HpySE526I | ACGT | 1 cut(s) | 327 |
| Hsp92II | CATG | 2 cut(s) | 176, 187 |
| KpnI | GGTACC | 1 cut(s) | 239 |
| Kzo9I | GATC | 2 cut(s) | 106, 354 |
| LmnI | GCTCC | 2 cut(s) | 11, 72 |
| LpnPI | CCDG | 8 cut(s) | 20, 299, 323, 350, 365, 441, 487, 582 |
| LweI | GCATC | 1 cut(s) | 440 |
| MaeII | ACGT | 1 cut(s) | 327 |
| MaeIII | GTNAC | 1 cut(s) | 388 |
| MalI | GATC | 2 cut(s) | 108, 356 |
| MboI | GATC | 2 cut(s) | 106, 354 |
| MfeI | CAATTG | 1 cut(s) | 81 |
| MluCI | AATT | 2 cut(s) | 81, 366 |
| MnlI | CCTC | 6 cut(s) | 80, 138, 174, 214, 376, 566 |
| MseI | TTAA | 3 cut(s) | 146, 363, 510 |
| MslI | CAYNNNNRTG | 1 cut(s) | 495 |
| MspI | CCGG | 1 cut(s) | 569 |
| MspR9I | CCNGG | 3 cut(s) | 338, 569, 570 |
| MunI | CAATTG | 1 cut(s) | 81 |
| MvaI | CCWGG | 1 cut(s) | 338 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 424, 523 |
| NciI | CCSGG | 2 cut(s) | 569, 570 |
| NdeI | CATATG | 1 cut(s) | 492 |
| NdeII | GATC | 2 cut(s) | 106, 354 |
| NlaIII | CATG | 2 cut(s) | 176, 187 |
| NlaIV | GGNNCC | 1 cut(s) | 237 |
| NmuCI | GTSAC | 1 cut(s) | 388 |
| NspI | RCATGY | 1 cut(s) | 176 |
| PaeR7I | CTCGAG | 1 cut(s) | 225 |
| PagI | TCATGA | 1 cut(s) | 183 |
| PceI | AGGCCT | 1 cut(s) | 427 |
| PciI | ACATGT | 1 cut(s) | 172 |
| PfeI | GAWTC | 1 cut(s) | 487 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 313 |
| PscI | ACATGT | 1 cut(s) | 172 |
| Psp1406I | AACGTT | 1 cut(s) | 327 |
| Psp6I | CCWGG | 1 cut(s) | 336 |
| PspGI | CCWGG | 1 cut(s) | 336 |
| PspN4I | GGNNCC | 1 cut(s) | 237 |
| RsaI | GTAC | 4 cut(s) | 133, 237, 312, 472 |
| RsaNI | GTAC | 4 cut(s) | 132, 236, 311, 471 |
| RseI | CAYNNNNRTG | 1 cut(s) | 495 |
| SaqAI | TTAA | 3 cut(s) | 146, 363, 510 |
| Sau3AI | GATC | 2 cut(s) | 106, 354 |
| ScaI | AGTACT | 1 cut(s) | 312 |
| ScrFI | CCNGG | 3 cut(s) | 338, 569, 570 |
| SfaNI | GCATC | 1 cut(s) | 440 |
| Sfr274I | CTCGAG | 1 cut(s) | 225 |
| SlaI | CTCGAG | 1 cut(s) | 225 |
| SmaI | CCCGGG | 1 cut(s) | 570 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 495 |
| SmlI | CTYRAG | 2 cut(s) | 225, 482 |
| SmoI | CTYRAG | 2 cut(s) | 225, 482 |
| Sse9I | AATT | 2 cut(s) | 81, 366 |
| SseBI | AGGCCT | 1 cut(s) | 427 |
| SsiI | CCGC | 1 cut(s) | 524 |
| StuI | AGGCCT | 1 cut(s) | 427 |
| StyD4I | CCNGG | 3 cut(s) | 336, 567, 568 |
| TaaI | ACNGT | 1 cut(s) | 196 |
| TaiI | ACGT | 1 cut(s) | 330 |
| TaqI | TCGA | 3 cut(s) | 206, 226, 357 |
| TasI | AATT | 2 cut(s) | 81, 366 |
| TatI | WGTACW | 1 cut(s) | 310 |
| TfiI | GAWTC | 1 cut(s) | 487 |
| Tru1I | TTAA | 3 cut(s) | 146, 363, 510 |
| Tru9I | TTAA | 3 cut(s) | 146, 363, 510 |
| TscAI | CASTG | 1 cut(s) | 397 |
| TseFI | GTSAC | 1 cut(s) | 388 |
| Tsp45I | GTSAC | 1 cut(s) | 388 |
| TspDTI | ATGAA | 4 cut(s) | 17, 200, 204, 473 |
| TspMI | CCCGGG | 1 cut(s) | 568 |
| TspRI | CASTG | 1 cut(s) | 397 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 313 |
| XceI | RCATGY | 1 cut(s) | 176 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 344 |
| XhoI | CTCGAG | 1 cut(s) | 225 |
| XmaI | CCCGGG | 1 cut(s) | 568 |
| ZrmI | AGTACT | 1 cut(s) | 312 |