Rmu_sc0020342.1_g000008

Rhamnogalacturonate lyase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020342.1
Physical Location & Seq
Forward (+)
23053 .. 29170
6118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020342.1_g000008.1.cds

Sequence Viewer

Length: 1464 bp
atgccaagagccaacgaccgtaaacatggtcagcaacttgcctatcctgaagccgttcgtttgaccaaaccaagtaatcaggcctttaaaggacaggtcgatgacaagtaccagtactcaatggaggacaaagataacaaggtccatggatggatttctacagaccatttggtgggattctggatgatcacacccagtgatgaatttcgttccgctggacccatgaagcagggcctaacatcccatgttggtccaactaccctctcgatgtttgttagtactcattatgctgggaagcgagcggggatagaattgaaaaagggtgaggcatggaaaaaggtctttgggcctgtctttgtgtatcttaattccgctccaagatcaaaaaataccaccggtacactctggaatgatgcgaaggagcagggataccaattctggattcgagctgacaaacaaagttattttctcattaaagatgttcgacctgggaactatagtctgtatgcttgggtcccaggtattgttggagattacaaatatggggctgatattaccattaaaccaggaagtaaaatcaatttgggtaatcttacttatgagcctccaagaaatggtcctaccttgtgggaaatcggtatccccgatcgaagtgccgctgagttctatgtaccggatccatatccaactctcatgaacaaattcaggtttagacaatacgggttgtggaaacgttatgaagagctgtacccccaccatgatcttatctacaccattggcattaatgattatcgttatgattggttctatgctcatgtgaccaggaatattggaaagcaaaagtatgtgggaaccacctggcaaattcgatttaaacttaacaacgtcatgagtcaaggaaattatacactccaattagcattggcgtcagctacttcttcagaaatacagaacataataaaccctaaaggctctcatggccgcgcaaacctagaaaccttagcatccaaattccgacatctgtgtcggcgccttctgcaaccacacccactgatcttctaccctatctcgctacctatcatggcaaacatcgactctgttaccaggaactttgctactttgcttgccattgcaagcaatgacgttgttgacatctctagcatgactgagggaggtgcacagcgtacttcccagtcctatcttttggcacgacccctcaccacgaagccaacaacagcgatggatctcaagcgacatttccggcgtgtttgggttttgaatcaaggctttaatgttcagcaaaggacaccagataggtttctgttctctttttatctcaggagttactggaggaaggtgttgatgggtggactatggaattttaaccggacacttgtggttgtgcagccctatgatggtatcgcaccgttgagatcggtgcctatgtttgatctattcttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

487

Amino Acids

56.11

Weight (kDa)

9.76

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000032)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20531 FvH4_1g22101 FvH4_1g26161 FvH4_2g06802 FvH4_2g07851 FvH4_2g07920 FvH4_2g11481 FvH4_2g14491 FvH4_2g14510 FvH4_3g02671 FvH4_3g10870 FvH4_3g16811 FvH4_3g18871 FvH4_3g20011 FvH4_3g29181 FvH4_3g30101 FvH4_3g33941 FvH4_4g08031 FvH4_4g10192 FvH4_4g20791 FvH4_5g02440 FvH4_5g03261 FvH4_5g15791 FvH4_5g22472 FvH4_5g23680 FvH4_5g26530 FvH4_5g26540 FvH4_5g30241 FvH4_5g32311 FvH4_5g38943 FvH4_6g05152 FvH4_6g10481 FvH4_6g14353 FvH4_6g17850 FvH4_6g19460 FvH4_6g23861 FvH4_6g30881 FvH4_6g31722 FvH4_6g40031 FvH4_6g46031 FvH4_6g49021 FvH4_7g12530 FvH4_7g15960
pyrus_communis pycom09g18450
rosa_chinensis RchiOBHm_Chr1g0341771 RchiOBHm_Chr1g0354791 RchiOBHm_Chr2g0095751 RchiOBHm_Chr5g0030691 RchiOBHm_Chr7g0181741 RchiOBHm_Chr7g0222721 RchiOBHm_Chr7g0243191
rosa_laevigata RLG00000001405 RLG00000001878 RLG00000002053 RLG00000002361 RLG00000003846 RLG00000012639 RLG00000013326 RLG00000014331 RLG00000017340 RLG00000017548 RLG00000018177 RLG00000018372 RLG00000019006 RLG00000019406 RLG00000019522 RLG00000019922 RLG00000020489 RLG00000022399 RLG00000023433 RLG00000027372 RLG00000028576 RLG00000028590 RLG00000028947 RLG00000032552 RLG00000033183 RLG00000033245 RLG00000033730 RLG00000034443 RLG00000034772 RLG00000036008
rosa_multiflora Rmu_co8029972.1_g000001 Rmu_co8044978.1_g000001 Rmu_co8338363.1_g000001 Rmu_co8426431.1_g000002 Rmu_co8457575.1_g000001 Rmu_sc0000010.1_g000025 Rmu_sc0000197.1_g000018 Rmu_sc0000220.1_g000009 Rmu_sc0000221.1_g000012 Rmu_sc0000258.1_g000002 Rmu_sc0000284.1_g000015 Rmu_sc0000303.1_g000021 Rmu_sc0000309.1_g000015 Rmu_sc0000317.1_g000017 Rmu_sc0000355.1_g000003 Rmu_sc0000376.1_g000035 Rmu_sc0000420.1_g000009 Rmu_sc0000493.1_g000019 Rmu_sc0000498.1_g000044 Rmu_sc0000540.1_g000015 Rmu_sc0000554.1_g000031 Rmu_sc0000577.1_g000004 Rmu_sc0000647.1_g000007 Rmu_sc0000703.1_g000002 Rmu_sc0000776.1_g000025 Rmu_sc0000924.1_g000044 Rmu_sc0000940.1_g000034 Rmu_sc0000940.1_g000036 Rmu_sc0000990.1_g000014 Rmu_sc0001004.1_g000018 Rmu_sc0001027.1_g000014 Rmu_sc0001059.1_g000004 Rmu_sc0001089.1_g000021 Rmu_sc0001118.1_g000013 Rmu_sc0001141.1_g000024 Rmu_sc0001154.1_g000002 Rmu_sc0001179.1_g000023 Rmu_sc0001230.1_g000014 Rmu_sc0001298.1_g000042 Rmu_sc0001306.1_g000030 Rmu_sc0001306.1_g000036 Rmu_sc0001341.1_g000007 Rmu_sc0001386.1_g000013 Rmu_sc0001461.1_g000019 Rmu_sc0001461.1_g000047 Rmu_sc0001476.1_g000013 Rmu_sc0001516.1_g000032 Rmu_sc0001780.1_g000007 Rmu_sc0001793.1_g000005 Rmu_sc0001911.1_g000013 Rmu_sc0001962.1_g000011 Rmu_sc0001986.1_g000004 Rmu_sc0002061.1_g000021 Rmu_sc0002119.1_g000024 Rmu_sc0002194.1_g000021 Rmu_sc0002284.1_g000019 Rmu_sc0002316.1_g000014 Rmu_sc0002322.1_g000006 Rmu_sc0002351.1_g000107 Rmu_sc0002387.1_g000008 Rmu_sc0002389.1_g000029 Rmu_sc0002507.1_g000001 Rmu_sc0002589.1_g000038 Rmu_sc0002638.1_g000041 Rmu_sc0002656.1_g000007 Rmu_sc0002882.1_g000030 Rmu_sc0002927.1_g000034 Rmu_sc0003024.1_g000020 Rmu_sc0003032.1_g000027 Rmu_sc0003069.1_g000025 Rmu_sc0003268.1_g000002 Rmu_sc0003296.1_g000007 Rmu_sc0003363.1_g000073 Rmu_sc0003527.1_g000017 Rmu_sc0003638.1_g000007 Rmu_sc0003669.1_g000007 Rmu_sc0003882.1_g000021 Rmu_sc0003941.1_g000004 Rmu_sc0003979.1_g000007 Rmu_sc0003983.1_g000007 Rmu_sc0003989.1_g000017 Rmu_sc0004016.1_g000003 Rmu_sc0004020.1_g000025 Rmu_sc0004094.1_g000016 Rmu_sc0004135.1_g000002 Rmu_sc0004154.1_g000014 Rmu_sc0004316.1_g000002 Rmu_sc0004316.1_g000015 Rmu_sc0004321.1_g000013 Rmu_sc0004467.1_g000005 Rmu_sc0004517.1_g000007 Rmu_sc0004642.1_g000012 Rmu_sc0004729.1_g000024 Rmu_sc0004757.1_g000018 Rmu_sc0004788.1_g000003 Rmu_sc0004835.1_g000026 Rmu_sc0004889.1_g000019 Rmu_sc0004991.1_g000009 Rmu_sc0005045.1_g000004 Rmu_sc0005079.1_g000004 Rmu_sc0005083.1_g000008 Rmu_sc0005170.1_g000002 Rmu_sc0005190.1_g000009 Rmu_sc0005217.1_g000010 Rmu_sc0005234.1_g000011 Rmu_sc0005608.1_g000016 Rmu_sc0005802.1_g000029 Rmu_sc0005810.1_g000006 Rmu_sc0005904.1_g000006 Rmu_sc0005967.1_g000012 Rmu_sc0006028.1_g000027 Rmu_sc0006059.1_g000040 Rmu_sc0006423.1_g000002 Rmu_sc0006467.1_g000001 Rmu_sc0006470.1_g000004 Rmu_sc0006598.1_g000003 Rmu_sc0006599.1_g000004 Rmu_sc0006632.1_g000021 Rmu_sc0006707.1_g000008 Rmu_sc0006791.1_g000008 Rmu_sc0006835.1_g000016 Rmu_sc0007100.1_g000002 Rmu_sc0007115.1_g000009 Rmu_sc0007362.1_g000012 Rmu_sc0007461.1_g000004 Rmu_sc0007474.1_g000001 Rmu_sc0007681.1_g000011 Rmu_sc0007697.1_g000003 Rmu_sc0007704.1_g000001 Rmu_sc0007722.1_g000016 Rmu_sc0007843.1_g000001 Rmu_sc0007856.1_g000009 Rmu_sc0008328.1_g000007 Rmu_sc0008780.1_g000005 Rmu_sc0009185.1_g000011 Rmu_sc0009599.1_g000021 Rmu_sc0009881.1_g000002 Rmu_sc0009891.1_g000002 Rmu_sc0010357.1_g000003 Rmu_sc0010781.1_g000005 Rmu_sc0011133.1_g000005 Rmu_sc0012334.1_g000001 Rmu_sc0012569.1_g000015 Rmu_sc0012984.1_g000001 Rmu_sc0013508.1_g000001 Rmu_sc0013550.1_g000005 Rmu_sc0013730.1_g000001 Rmu_sc0013945.1_g000001 Rmu_sc0013945.1_g000003 Rmu_sc0014005.1_g000005 Rmu_sc0014111.1_g000009 Rmu_sc0014111.1_g000010 Rmu_sc0014203.1_g000025 Rmu_sc0014839.1_g000002 Rmu_sc0015410.1_g000001 Rmu_sc0015513.1_g000003 Rmu_sc0015791.1_g000008 Rmu_sc0016657.1_g000004 Rmu_sc0017187.1_g000002 Rmu_sc0017400.1_g000001 Rmu_sc0017895.1_g000006 Rmu_sc0018221.1_g000008 Rmu_sc0018825.1_g000002 Rmu_sc0019047.1_g000001 Rmu_sc0019077.1_g000001 Rmu_sc0019171.1_g000001 Rmu_sc0019299.1_g000002 Rmu_sc0020342.1_g000008 Rmu_sc0020688.1_g000002 Rmu_sc0020688.1_g000003 Rmu_sc0021871.1_g000012 Rmu_sc0022925.1_g000001 Rmu_sc0023965.1_g000005 Rmu_sc0024968.1_g000001 Rmu_sc0024969.1_g000001 Rmu_sc0025035.1_g000002 Rmu_sc0025167.1_g000005 Rmu_sc0025567.1_g000001 Rmu_sc0026096.1_g000001 Rmu_sc0026586.1_g000001 Rmu_sc0028358.1_g000002 Rmu_sc0032171.1_g000001 Rmu_sc0034632.1_g000001 Rmu_sc0034633.1_g000001 Rmu_sc0035481.1_g000001 Rmu_sc0036303.1_g000001 Rmu_sc0039774.1_g000001 Rmu_sc0040023.1_g000002 Rmu_sc0040790.1_g000001 Rmu_sc0041574.1_g000001 Rmu_sc0042768.1_g000003 Rmu_ssc0000038.1_g000016 Rmu_ssc0000062.1_g000035 Rmu_ssc0000083.1_g000009 Rmu_ssc0000093.1_g000006 Rmu_ssc0000112.1_g000023 Rmu_ssc0000155.1_g000007 Rmu_ssc0000171.1_g000017 Rmu_ssc0000196.1_g000017 Rmu_ssc0000257.1_g000027 Rmu_ssc0000323.1_g000023 Rmu_ssc0000440.1_g000011 Rmu_ssc0000454.1_g000021 Rmu_ssc0000473.1_g000011
rosa_roxburghii Rroxscaffold_1G00014010 Rroxscaffold_1G00039470 Rroxscaffold_1G00045350 Rroxscaffold_2G00082440 Rroxscaffold_2G00096630 Rroxscaffold_2G00100560 Rroxscaffold_2G00102600 Rroxscaffold_2G00117720 Rroxscaffold_2G00120390 Rroxscaffold_2G00126010 Rroxscaffold_3G00220680 Rroxscaffold_3G00241760 Rroxscaffold_4G00309670 Rroxscaffold_4G00312380 Rroxscaffold_5G00339950 Rroxscaffold_5G00361980 Rroxscaffold_5G00370500 Rroxscaffold_5G00376480 Rroxscaffold_5G00384070 Rroxscaffold_6G00393690 Rroxscaffold_6G00396520 Rroxscaffold_6G00396850 Rroxscaffold_6G00404790 Rroxscaffold_7G00177690 Rroxscaffold_7G00178170 Rroxscaffold_7G00194330 Rroxscaffold_7G00197090 Rroxscaffold_9G00437910
rosa_rugosa Rorug01G0010100 Rorug01G0035300 Rorug01G0038600 Rorug01G0038700 Rorug01G0050300 Rorug01G0143800.1 Rorug01G0211700 Rorug01G0266600 Rorug01G0268800 Rorug01G0301200 Rorug02G0139800 Rorug02G0247100 Rorug02G0247100 Rorug02G0276800 Rorug02G0283300 Rorug02G0289800 Rorug02G0326700 Rorug02G0368100 Rorug02G0427000 Rorug02G0439100 Rorug02G0611200 Rorug02G0626600 Rorug03G0049100 Rorug03G0108000 Rorug03G0118600 Rorug03G0174300.1 Rorug03G0182300 Rorug03G0189800 Rorug03G0207000 Rorug03G0220700 Rorug03G0229400 Rorug03G0253700 Rorug03G0276500 Rorug03G0283300.1 Rorug03G0283500 Rorug03G0283600 Rorug03G0299600 Rorug04G0052200 Rorug04G0052300 Rorug04G0115800 Rorug04G0159700 Rorug04G0170900 Rorug04G0178100 Rorug04G0250800 Rorug04G0317200 Rorug04G0409500 Rorug05G0022500 Rorug05G0134900 Rorug05G0144800 Rorug05G0158200 Rorug05G0168300 Rorug05G0168400 Rorug05G0168600 Rorug05G0229800 Rorug05G0259100 Rorug05G0285700 Rorug05G0294600 Rorug05G0306400 Rorug05G0335300 Rorug05G0390100 Rorug05G0392900 Rorug05G0407100 Rorug05G0416600 Rorug05G0536900 Rorug05G0550300 Rorug06G0040900 Rorug06G0042800 Rorug06G0093000 Rorug06G0110700 Rorug06G0115600 Rorug06G0205700 Rorug07G0016900.1 Rorug07G0017000 Rorug07G0095200 Rorug07G0106400 Rorug07G0116400 Rorug07G0127300 Rorug07G0151100 Rorug07G0151200 Rorug07G0178200 Rorug07G0224300 Rorug07G0224400 Rorug07G0226400 Rorug07G0258200 Rorug07G0328000 RorugPtG0002700.1
rosa_samantha Rh1BG231600 Rh1BG235500 Rh1DG259300 Rh2AG044200 Rh2AG095600 Rh2AG164800 Rh2AG361400 Rh2AG370600 Rh2AG487800 Rh2AG620400 Rh2BG171900 Rh2BG244600 Rh2BG500300 Rh2CG189500 Rh2CG317600 Rh2CG374400 Rh2CG474300 Rh2DG170300 Rh2DG374800 Rh2DG511500 Rh3AG273400 Rh3AG331300 Rh3CG203900 Rh3CG222200 Rh3CG253800 Rh3CG269900 Rh3DG073800 Rh3DG208100 Rh3DG224000 Rh3DG265900 Rh4AG217200 Rh4BG076000 Rh4BG113200 Rh4BG240700 Rh4BG414300 Rh4CG266600 Rh4CG307600 Rh5BG088500 Rh5BG469000 Rh5CG284400 Rh5CG491200 Rh5CG557400 Rh5DG399000 Rh6AG457400 Rh6BG339800 Rh6BG443700 Rh6CG115400 Rh6CG471500 Rh6DG390100 Rh6DG457900 Rh7AG372100 Rh7AG429800 Rh7AG484600 Rh7BG176400 Rh7BG233900 Rh7BG244400 Rh7BG279800 Rh7BG285100 Rh7CG172200 Rh7CG390500 Rh7CG502600 Rh7CG518200 Rh7DG252500 Rh7DG294200 Rh7DG376400 Rh7DG390100
rosa_wichuraiana Rw0G001650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1023
AccB1I GGYRCC 2 cut(s) 1029, 1438
AccB7I CCANNNNNTGG 2 cut(s) 172, 614
AccBSI CCGCTC 2 cut(s) 302, 374
AccII CGCG 1 cut(s) 984
AciI CCGC 5 cut(s) 213, 302, 372, 657, 982
AclI AACGTT 1 cut(s) 733
AclWI GGATC 3 cut(s) 671, 684, 1251
AcoI YGGCCR 1 cut(s) 979
AcsI RAATTY 5 cut(s) 203, 701, 864, 1010, 1378
AcuI CTGAAG 2 cut(s) 69, 924
AcyI GRCGYC 2 cut(s) 926, 1030
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 7 cut(s) 110, 116, 280, 400, 672, 749, 1186
AfiI CCNNNNNNNGG 3 cut(s) 172, 614, 1415
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 2 cut(s) 316, 1279
AjnI CCWGG 6 cut(s) 487, 517, 565, 821, 857, 1103
AjuI GAANNNNNNNTTGG 2 cut(s) 426, 458
AluBI AGCT 3 cut(s) 449, 745, 932
AluI AGCT 3 cut(s) 449, 745, 932
Alw21I GWGCWC 1 cut(s) 1180
Alw44I GTGCAC 1 cut(s) 1176
AlwI GGATC 3 cut(s) 671, 684, 1251
AoxI GGCC 4 cut(s) 81, 232, 347, 979
ApaLI GTGCAC 1 cut(s) 1176
ApeKI GCWGC 1 cut(s) 1405
ApoI RAATTY 5 cut(s) 203, 701, 864, 1010, 1378
AseI ATTAAT 1 cut(s) 783
AsiGI ACCGGT 1 cut(s) 395
Asp700I GAANNNNTTC 2 cut(s) 54, 701
AspLEI GCGC 2 cut(s) 986, 1032
AspS9I GGNCC 7 cut(s) 142, 218, 232, 251, 347, 514, 617
AsuHPI GGTGA 2 cut(s) 335, 1210
AvaII GGWCC 5 cut(s) 142, 218, 251, 514, 617
BaeGI GKGCMC 1 cut(s) 1180
BamHI GGATCC 1 cut(s) 676
BanI GGYRCC 2 cut(s) 1029, 1438
Bbv12I GWGCWC 1 cut(s) 1180
BbvI GCAGC 1 cut(s) 1417
BccI CCATC 4 cut(s) 144, 1234, 1357, 1409
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BciT130I CCWGG 6 cut(s) 489, 519, 567, 823, 859, 1105
BciVI GTATCC 2 cut(s) 422, 650
BclI TGATCA 1 cut(s) 186
BfaI CTAG 3 cut(s) 992, 1158, 1462
BfmI CTRYAG 2 cut(s) 159, 496
BfoI RGCGCY 1 cut(s) 1033
BfuI GTATCC 2 cut(s) 422, 650
BisI GCNGC 3 cut(s) 657, 982, 1406
BlsI GCNGC 3 cut(s) 658, 983, 1407
BmcAI AGTACT 2 cut(s) 116, 280
Bme1390I CCNGG 6 cut(s) 489, 519, 567, 823, 859, 1105
Bme18I GGWCC 5 cut(s) 142, 218, 251, 514, 617
BmgT120I GGNCC 7 cut(s) 142, 218, 232, 251, 347, 514, 617
BmiI GGNNCC 7 cut(s) 220, 515, 516, 678, 853, 1031, 1440
BmrFI CCNGG 6 cut(s) 489, 519, 567, 823, 859, 1105
BmrI ACTGGG 2 cut(s) 189, 1186
BmsI GCATC 2 cut(s) 403, 1013
BmuI ACTGGG 2 cut(s) 189, 1186
BpmI CTGGAG 1 cut(s) 1369
Bpu10I CCTNAGC 1 cut(s) 1000
BpuEI CTTGAG 1 cut(s) 1232
BsaBI GATNNNNATC 1 cut(s) 681
BsaHI GRCGYC 2 cut(s) 926, 1030
BsaJI CCNNGG 3 cut(s) 145, 488, 517
BsaWI WCCGGW 3 cut(s) 395, 673, 1386
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 614, 1415
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 4 cut(s) 112, 195, 1192, 1352
Bse3DI GCAATG 2 cut(s) 1128, 1144
Bse8I GATNNNNATC 1 cut(s) 681
BseBI CCWGG 6 cut(s) 489, 519, 567, 823, 859, 1105
BseDI CCNNGG 3 cut(s) 145, 488, 517
BseGI GGATG 4 cut(s) 155, 189, 239, 1004
BseJI GATNNNNATC 1 cut(s) 681
BseLI CCNNNNNNNGG 3 cut(s) 172, 614, 1415
BseMI GCAATG 2 cut(s) 1128, 1144
BseMII CTCAG 3 cut(s) 651, 1158, 1351
BseNI ACTGG 4 cut(s) 112, 195, 1192, 1352
BseSI GKGCMC 1 cut(s) 1180
BseXI GCAGC 1 cut(s) 1417
BseYI CCCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 1424
Bsh1236I CGCG 1 cut(s) 984
Bsh1285I CGRYCG 2 cut(s) 19, 649
BshFI GGCC 4 cut(s) 83, 234, 349, 981
BshNI GGYRCC 2 cut(s) 1029, 1438
BshTI ACCGGT 1 cut(s) 395
BsiEI CGRYCG 2 cut(s) 19, 649
BsiHKAI GWGCWC 1 cut(s) 1180
BsiSI CCGG 4 cut(s) 396, 674, 1261, 1387
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 3 cut(s) 172, 614, 1415
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 4 cut(s) 83, 234, 349, 981
Bsp1286I GDGCHC 1 cut(s) 1180
Bsp143I GATC 9 cut(s) 186, 380, 646, 676, 760, 1053, 1243, 1433, 1450
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 5 cut(s) 213, 302, 372, 657, 982
BspANI GGCC 4 cut(s) 83, 234, 349, 981
BspCNI CTCAG 3 cut(s) 652, 1159, 1350
BspFNI CGCG 1 cut(s) 984
BspHI TCATGA 2 cut(s) 693, 888
BspLI GGNNCC 7 cut(s) 220, 515, 516, 678, 853, 1031, 1440
BspPI GGATC 3 cut(s) 671, 684, 1251
BspQI GCTCTTC 1 cut(s) 735
BspT107I GGYRCC 2 cut(s) 1029, 1438
BsrBI CCGCTC 2 cut(s) 302, 374
BsrDI GCAATG 2 cut(s) 1128, 1144
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 4 cut(s) 112, 195, 1192, 1352
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 3 cut(s) 145, 488, 517
BssMI GATC 9 cut(s) 186, 380, 646, 676, 760, 1053, 1243, 1433, 1450
BssNI GRCGYC 2 cut(s) 926, 1030
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 6 cut(s) 489, 519, 567, 823, 859, 1105
Bst4CI ACNGT 2 cut(s) 20, 1428
Bst6I CTCTTC 1 cut(s) 735
BstACI GRCGYC 2 cut(s) 926, 1030
BstC8I GCNNGC 3 cut(s) 300, 1125, 1135
BstDEI CTNAG 4 cut(s) 660, 1000, 1167, 1337
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 4 cut(s) 155, 189, 239, 1004
BstFNI CGCG 1 cut(s) 984
BstH2I RGCGCY 1 cut(s) 1033
BstHHI GCGC 2 cut(s) 986, 1032
BstKTI GATC 9 cut(s) 189, 383, 649, 679, 763, 1056, 1246, 1436, 1453
BstMBI GATC 9 cut(s) 186, 380, 646, 676, 760, 1053, 1243, 1433, 1450
BstMCI CGRYCG 2 cut(s) 19, 649
BstMWI GCNNNNNNNGC 2 cut(s) 978, 1036
BstNI CCWGG 6 cut(s) 489, 519, 567, 823, 859, 1105
BstSCI CCNGG 6 cut(s) 487, 517, 565, 821, 857, 1103
BstSFI CTRYAG 2 cut(s) 159, 496
BstSLI GKGCMC 1 cut(s) 1180
BstUI CGCG 1 cut(s) 984
BstV1I GCAGC 1 cut(s) 1417
BstX2I RGATCY 2 cut(s) 676, 1243
BstYI RGATCY 2 cut(s) 676, 1243
BsuI GTATCC 2 cut(s) 422, 650
BsuRI GGCC 4 cut(s) 83, 234, 349, 981
BtgI CCRYGG 1 cut(s) 145
BtgZI GCGATG 1 cut(s) 1253
BtsCI GGATG 4 cut(s) 155, 189, 239, 1004
BtsIMutI CAGTG 2 cut(s) 202, 1049
Cac8I GCNNGC 3 cut(s) 300, 1125, 1135
CciI TCATGA 2 cut(s) 693, 888
CfoI GCGC 2 cut(s) 986, 1032
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 7 cut(s) 142, 218, 232, 251, 347, 514, 617
CseI GACGC 1 cut(s) 915
Csp6I GTAC 7 cut(s) 109, 115, 279, 399, 671, 748, 1185
CspAI ACCGGT 1 cut(s) 395
CviQI GTAC 7 cut(s) 109, 115, 279, 399, 671, 748, 1185
DdeI CTNAG 4 cut(s) 660, 1000, 1167, 1337
DinI GGCGCC 1 cut(s) 1031
DpnI GATC 9 cut(s) 188, 382, 648, 678, 762, 1055, 1245, 1435, 1452
DpnII GATC 9 cut(s) 186, 380, 646, 676, 760, 1053, 1243, 1433, 1450
DraI TTTAAA 2 cut(s) 88, 874
DraIII CACNNNGTG 1 cut(s) 197
DrdI GACNNNNNNGTC 1 cut(s) 1023
DseDI GACNNNNNNGTC 1 cut(s) 1023
EaeI YGGCCR 1 cut(s) 979
Eam1104I CTCTTC 1 cut(s) 735
EarI CTCTTC 1 cut(s) 735
Eco130I CCWWGG 1 cut(s) 145
Eco147I AGGCCT 1 cut(s) 83
Eco47I GGWCC 5 cut(s) 142, 218, 251, 514, 617
Eco57I CTGAAG 2 cut(s) 69, 924
EcoO109I RGGNCCY 2 cut(s) 232, 514
EcoRII CCWGG 6 cut(s) 487, 517, 565, 821, 857, 1103
EcoT14I CCWWGG 1 cut(s) 145
EgeI GGCGCC 1 cut(s) 1031
EheI GGCGCC 1 cut(s) 1031
ErhI CCWWGG 1 cut(s) 145
FaqI GGGAC 1 cut(s) 500
FauI CCCGC 1 cut(s) 295
FbaI TGATCA 1 cut(s) 186
Fnu4HI GCNGC 3 cut(s) 657, 982, 1406
FokI GGATG 4 cut(s) 162, 196, 226, 991
Fsp4HI GCNGC 3 cut(s) 657, 982, 1406
FspBI CTAG 3 cut(s) 992, 1158, 1462
GlaI GCGC 2 cut(s) 985, 1031
GluI GCNGC 3 cut(s) 657, 982, 1406
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 1369
HaeII RGCGCY 1 cut(s) 1033
HaeIII GGCC 4 cut(s) 83, 234, 349, 981
HapII CCGG 4 cut(s) 396, 674, 1261, 1387
HgaI GACGC 1 cut(s) 915
HhaI GCGC 2 cut(s) 986, 1032
Hin1I GRCGYC 2 cut(s) 926, 1030
Hin6I GCGC 2 cut(s) 984, 1030
HinP1I GCGC 2 cut(s) 984, 1030
HincII GTYRAC 1 cut(s) 1150
HindII GTYRAC 1 cut(s) 1150
HinfI GANTC 5 cut(s) 177, 442, 892, 1094, 1279
HpaII CCGG 4 cut(s) 396, 674, 1261, 1387
HphI GGTGA 2 cut(s) 335, 1210
Hpy166II GTNNAC 5 cut(s) 23, 401, 1150, 1178, 1370
Hpy188I TCNGA 2 cut(s) 943, 1016
Hpy188III TCNNGA 8 cut(s) 47, 181, 265, 406, 439, 694, 889, 1339
Hpy8I GTNNAC 5 cut(s) 23, 401, 1150, 1178, 1370
HpyAV CCTTC 3 cut(s) 412, 1043, 1348
HpyCH4III ACNGT 2 cut(s) 20, 1428
HpyCH4IV ACGT 3 cut(s) 733, 885, 1143
HpyCH4V TGCA 4 cut(s) 1039, 1133, 1178, 1405
HpyF10VI GCNNNNNNNGC 2 cut(s) 978, 1036
HpyF3I CTNAG 4 cut(s) 660, 1000, 1167, 1337
HpySE526I ACGT 3 cut(s) 733, 885, 1143
Hsp92I GRCGYC 2 cut(s) 926, 1030
HspAI GCGC 2 cut(s) 984, 1030
KasI GGCGCC 1 cut(s) 1029
KflI GGGWCCC 1 cut(s) 514
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 9 cut(s) 186, 380, 646, 676, 760, 1053, 1243, 1433, 1450
LguI GCTCTTC 1 cut(s) 735
LmnI GCTCC 2 cut(s) 379, 421
Lsp1109I GCAGC 1 cut(s) 1417
LweI GCATC 2 cut(s) 403, 1013
MaeI CTAG 3 cut(s) 992, 1158, 1462
MaeII ACGT 3 cut(s) 733, 885, 1143
MaeIII GTNAC 3 cut(s) 817, 1099, 1343
MalI GATC 9 cut(s) 188, 382, 648, 678, 762, 1055, 1245, 1435, 1452
MbiI CCGCTC 2 cut(s) 302, 374
MboI GATC 9 cut(s) 186, 380, 646, 676, 760, 1053, 1243, 1433, 1450
MboII GAAGA 4 cut(s) 752, 930, 1048, 1450
MflI RGATCY 2 cut(s) 676, 1243
MhlI GDGCHC 1 cut(s) 1180
Mly113I GGCGCC 1 cut(s) 1030
MlyI GAGTC 2 cut(s) 901, 1088
MmeI TCCRAC 4 cut(s) 278, 508, 710, 1039
MnlI CCTC 8 cut(s) 118, 272, 319, 615, 1162, 1166, 1226, 1344
MroXI GAANNNNTTC 2 cut(s) 54, 701
MseI TTAA 9 cut(s) 87, 366, 474, 561, 783, 873, 879, 1290, 1383
MspA1I CMGCKG 2 cut(s) 215, 659
MspI CCGG 4 cut(s) 396, 674, 1261, 1387
MspR9I CCNGG 6 cut(s) 489, 519, 567, 823, 859, 1105
MvaI CCWGG 6 cut(s) 489, 519, 567, 823, 859, 1105
MvnI CGCG 1 cut(s) 984
MwoI GCNNNNNNNGC 2 cut(s) 978, 1036
NarI GGCGCC 1 cut(s) 1030
NcoI CCATGG 1 cut(s) 145
NdeII GATC 9 cut(s) 186, 380, 646, 676, 760, 1053, 1243, 1433, 1450
NlaIV GGNNCC 7 cut(s) 220, 515, 516, 678, 853, 1031, 1440
NmuCI GTSAC 1 cut(s) 817
PagI TCATGA 2 cut(s) 693, 888
PceI AGGCCT 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 735
PcsI WCGNNNNNNNCGW 1 cut(s) 642
PdmI GAANNNNTTC 2 cut(s) 54, 701
PfeI GAWTC 3 cut(s) 177, 442, 1279
PflMI CCANNNNNTGG 2 cut(s) 172, 614
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 3 cut(s) 658, 983, 1407
Ple19I CGATCG 1 cut(s) 649
PleI GAGTC 2 cut(s) 900, 1088
PluTI GGCGCC 1 cut(s) 1033
PpsI GAGTC 2 cut(s) 900, 1088
PpuMI RGGWCCY 1 cut(s) 514
PshBI ATTAAT 1 cut(s) 783
Psp1406I AACGTT 1 cut(s) 733
Psp5II RGGWCCY 1 cut(s) 514
Psp6I CCWGG 6 cut(s) 487, 517, 565, 821, 857, 1103
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 6 cut(s) 487, 517, 565, 821, 857, 1103
PspN4I GGNNCC 7 cut(s) 220, 515, 516, 678, 853, 1031, 1440
PspPI GGNCC 7 cut(s) 142, 218, 232, 251, 347, 514, 617
PspPPI RGGWCCY 1 cut(s) 514
PsuI RGATCY 2 cut(s) 676, 1243
PvuI CGATCG 1 cut(s) 649
RsaI GTAC 7 cut(s) 110, 116, 280, 400, 672, 749, 1186
RsaNI GTAC 7 cut(s) 109, 115, 279, 399, 671, 748, 1185
SapI GCTCTTC 1 cut(s) 735
SaqAI TTAA 9 cut(s) 87, 366, 474, 561, 783, 873, 879, 1290, 1383
SatI GCNGC 3 cut(s) 657, 982, 1406
Sau3AI GATC 9 cut(s) 186, 380, 646, 676, 760, 1053, 1243, 1433, 1450
Sau96I GGNCC 7 cut(s) 142, 218, 232, 251, 347, 514, 617
ScaI AGTACT 2 cut(s) 116, 280
SchI GAGTC 2 cut(s) 901, 1088
ScrFI CCNGG 6 cut(s) 489, 519, 567, 823, 859, 1105
SduI GDGCHC 1 cut(s) 1180
SfaNI GCATC 2 cut(s) 403, 1013
SfcI CTRYAG 2 cut(s) 159, 496
SfoI GGCGCC 1 cut(s) 1031
SinI GGWCC 5 cut(s) 142, 218, 251, 514, 617
SmlI CTYRAG 1 cut(s) 1247
SmoI CTYRAG 1 cut(s) 1247
SseBI AGGCCT 1 cut(s) 83
SsiI CCGC 5 cut(s) 213, 302, 372, 657, 982
SspDI GGCGCC 1 cut(s) 1029
SspI AATATT 1 cut(s) 829
SspMI CTAG 3 cut(s) 992, 1158, 1462
StuI AGGCCT 1 cut(s) 83
StyD4I CCNGG 6 cut(s) 487, 517, 565, 821, 857, 1103
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 20, 1428
TaiI ACGT 3 cut(s) 736, 888, 1146
TaqI TCGA 7 cut(s) 99, 266, 445, 484, 649, 868, 1092
TatI WGTACW 2 cut(s) 114, 278
TauI GCSGC 2 cut(s) 659, 984
TfiI GAWTC 3 cut(s) 177, 442, 1279
Tru1I TTAA 9 cut(s) 87, 366, 474, 561, 783, 873, 879, 1290, 1383
Tru9I TTAA 9 cut(s) 87, 366, 474, 561, 783, 873, 879, 1290, 1383
TscAI CASTG 2 cut(s) 202, 1056
TseFI GTSAC 1 cut(s) 817
TseI GCWGC 1 cut(s) 1405
Tsp45I GTSAC 1 cut(s) 817
TspDTI ATGAA 4 cut(s) 216, 239, 710, 753
TspRI CASTG 2 cut(s) 202, 1056
Van91I CCANNNNNTGG 2 cut(s) 172, 614
VneI GTGCAC 1 cut(s) 1176
VpaK11BI GGWCC 5 cut(s) 142, 218, 251, 514, 617
VspI ATTAAT 1 cut(s) 783
XapI RAATTY 5 cut(s) 203, 701, 864, 1010, 1378
XmnI GAANNNNTTC 2 cut(s) 54, 701
XspI CTAG 3 cut(s) 992, 1158, 1462
ZrmI AGTACT 2 cut(s) 116, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.