Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 8 |
| AciI | CCGC | 2 cut(s) | 134, 464 |
| AclWI | GGATC | 2 cut(s) | 97, 353 |
| AcoI | YGGCCR | 1 cut(s) | 126 |
| AcsI | RAATTY | 1 cut(s) | 379 |
| AcuI | CTGAAG | 1 cut(s) | 578 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 1 cut(s) | 238 |
| AgsI | TTSAA | 2 cut(s) | 85, 316 |
| AjnI | CCWGG | 2 cut(s) | 580, 660 |
| AluBI | AGCT | 1 cut(s) | 323 |
| AluI | AGCT | 1 cut(s) | 323 |
| AlwI | GGATC | 2 cut(s) | 97, 353 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 59 |
| AoxI | GGCC | 2 cut(s) | 126, 302 |
| ApeKI | GCWGC | 1 cut(s) | 707 |
| ApoI | RAATTY | 1 cut(s) | 379 |
| AspLEI | GCGC | 1 cut(s) | 102 |
| AspS9I | GGNCC | 1 cut(s) | 302 |
| AsuII | TTCGAA | 1 cut(s) | 716 |
| AxyI | CCTNAGG | 1 cut(s) | 111 |
| BalI | TGGCCA | 1 cut(s) | 128 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 464, 496 |
| BbsI | GAAGAC | 1 cut(s) | 725 |
| BbvI | GCAGC | 1 cut(s) | 694 |
| BccI | CCATC | 1 cut(s) | 651 |
| BceAI | ACGGC | 1 cut(s) | 289 |
| BciT130I | CCWGG | 2 cut(s) | 582, 662 |
| BciVI | GTATCC | 1 cut(s) | 422 |
| BfaI | CTAG | 1 cut(s) | 425 |
| BfmI | CTRYAG | 1 cut(s) | 335 |
| BfoI | RGCGCY | 1 cut(s) | 103 |
| BfuI | GTATCC | 1 cut(s) | 422 |
| BisI | GCNGC | 2 cut(s) | 134, 708 |
| BlsI | GCNGC | 2 cut(s) | 135, 709 |
| Bme1390I | CCNGG | 2 cut(s) | 582, 662 |
| BmgT120I | GGNCC | 1 cut(s) | 302 |
| BmiI | GGNNCC | 1 cut(s) | 217 |
| BmrFI | CCNGG | 2 cut(s) | 582, 662 |
| BmsI | GCATC | 1 cut(s) | 673 |
| BpiI | GAAGAC | 1 cut(s) | 725 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 86, 118 |
| BpmI | CTGGAG | 2 cut(s) | 234, 603 |
| Bpu14I | TTCGAA | 1 cut(s) | 716 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 1 cut(s) | 661 |
| BsaWI | WCCGGW | 1 cut(s) | 325 |
| Bse1I | ACTGG | 2 cut(s) | 217, 711 |
| Bse21I | CCTNAGG | 1 cut(s) | 111 |
| BseBI | CCWGG | 2 cut(s) | 582, 662 |
| BseDI | CCNNGG | 1 cut(s) | 661 |
| BseGI | GGATG | 1 cut(s) | 544 |
| BseMII | CTCAG | 2 cut(s) | 125, 379 |
| BseNI | ACTGG | 2 cut(s) | 217, 711 |
| BseXI | GCAGC | 1 cut(s) | 694 |
| BshFI | GGCC | 2 cut(s) | 128, 304 |
| BsiSI | CCGG | 1 cut(s) | 326 |
| BslFI | GGGAC | 1 cut(s) | 650 |
| BsmFI | GGGAC | 1 cut(s) | 650 |
| BsmI | GAATGC | 1 cut(s) | 369 |
| BsnI | GGCC | 2 cut(s) | 128, 304 |
| Bsp119I | TTCGAA | 1 cut(s) | 716 |
| Bsp143I | GATC | 3 cut(s) | 89, 265, 358 |
| BspACI | CCGC | 2 cut(s) | 134, 464 |
| BspANI | GGCC | 2 cut(s) | 128, 304 |
| BspCNI | CTCAG | 2 cut(s) | 124, 378 |
| BspHI | TCATGA | 2 cut(s) | 444, 655 |
| BspLI | GGNNCC | 1 cut(s) | 217 |
| BspPI | GGATC | 2 cut(s) | 97, 353 |
| BspQI | GCTCTTC | 1 cut(s) | 392 |
| BspT104I | TTCGAA | 1 cut(s) | 716 |
| BsrI | ACTGG | 2 cut(s) | 217, 711 |
| BssECI | CCNNGG | 1 cut(s) | 661 |
| BssMI | GATC | 3 cut(s) | 89, 265, 358 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst2UI | CCWGG | 2 cut(s) | 582, 662 |
| Bst4CI | ACNGT | 3 cut(s) | 150, 162, 694 |
| Bst6I | CTCTTC | 1 cut(s) | 392 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstBI | TTCGAA | 1 cut(s) | 716 |
| BstC8I | GCNNGC | 2 cut(s) | 55, 420 |
| BstDEI | CTNAG | 2 cut(s) | 111, 365 |
| BstF5I | GGATG | 1 cut(s) | 544 |
| BstH2I | RGCGCY | 1 cut(s) | 103 |
| BstHHI | GCGC | 1 cut(s) | 102 |
| BstKTI | GATC | 3 cut(s) | 92, 268, 361 |
| BstMBI | GATC | 3 cut(s) | 89, 265, 358 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 32 |
| BstNI | CCWGG | 2 cut(s) | 582, 662 |
| BstSCI | CCNGG | 2 cut(s) | 580, 660 |
| BstSFI | CTRYAG | 1 cut(s) | 335 |
| BstV1I | GCAGC | 1 cut(s) | 694 |
| BstV2I | GAAGAC | 1 cut(s) | 725 |
| BstX2I | RGATCY | 1 cut(s) | 358 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 86 |
| BstYI | RGATCY | 1 cut(s) | 358 |
| Bsu36I | CCTNAGG | 1 cut(s) | 111 |
| BsuI | GTATCC | 1 cut(s) | 422 |
| BsuRI | GGCC | 2 cut(s) | 128, 304 |
| BtsCI | GGATG | 1 cut(s) | 544 |
| Cac8I | GCNNGC | 2 cut(s) | 55, 420 |
| CaiI | CAGNNNCTG | 1 cut(s) | 59 |
| CciI | TCATGA | 2 cut(s) | 444, 655 |
| CfoI | GCGC | 1 cut(s) | 102 |
| Cfr13I | GGNCC | 1 cut(s) | 302 |
| Csp6I | GTAC | 1 cut(s) | 237 |
| CviAII | CATG | 5 cut(s) | 275, 376, 445, 533, 656 |
| CviJI | RGCY | 8 cut(s) | 57, 116, 128, 133, 218, 304, 323, 422 |
| CviKI_1 | RGCY | 8 cut(s) | 57, 116, 128, 133, 218, 304, 323, 422 |
| CviQI | GTAC | 1 cut(s) | 237 |
| DdeI | CTNAG | 2 cut(s) | 111, 365 |
| DpnI | GATC | 3 cut(s) | 91, 267, 360 |
| DpnII | GATC | 3 cut(s) | 89, 265, 358 |
| DraI | TTTAAA | 1 cut(s) | 294 |
| EaeI | YGGCCR | 1 cut(s) | 126 |
| Eam1104I | CTCTTC | 1 cut(s) | 392 |
| EarI | CTCTTC | 1 cut(s) | 392 |
| Eco57I | CTGAAG | 1 cut(s) | 578 |
| Eco81I | CCTNAGG | 1 cut(s) | 111 |
| EcoRII | CCWGG | 2 cut(s) | 580, 660 |
| FaeI | CATG | 5 cut(s) | 278, 379, 448, 536, 659 |
| FaiI | YATR | 8 cut(s) | 276, 345, 377, 446, 534, 539, 657, 670 |
| FaqI | GGGAC | 1 cut(s) | 650 |
| FatI | CATG | 5 cut(s) | 274, 375, 444, 532, 655 |
| FauI | CCCGC | 1 cut(s) | 457 |
| Fnu4HI | GCNGC | 2 cut(s) | 134, 708 |
| FokI | GGATG | 1 cut(s) | 531 |
| Fsp4HI | GCNGC | 2 cut(s) | 134, 708 |
| FspBI | CTAG | 1 cut(s) | 425 |
| GlaI | GCGC | 1 cut(s) | 101 |
| GluI | GCNGC | 2 cut(s) | 134, 708 |
| GsuI | CTGGAG | 2 cut(s) | 234, 603 |
| HaeII | RGCGCY | 1 cut(s) | 103 |
| HaeIII | GGCC | 2 cut(s) | 128, 304 |
| HapII | CCGG | 1 cut(s) | 326 |
| HhaI | GCGC | 1 cut(s) | 102 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 5 cut(s) | 278, 379, 448, 536, 659 |
| Hin6I | GCGC | 1 cut(s) | 100 |
| HinP1I | GCGC | 1 cut(s) | 100 |
| HincII | GTYRAC | 1 cut(s) | 70 |
| HindII | GTYRAC | 1 cut(s) | 70 |
| HinfI | GANTC | 2 cut(s) | 195, 565 |
| HpaII | CCGG | 1 cut(s) | 326 |
| Hpy166II | GTNNAC | 2 cut(s) | 70, 523 |
| Hpy188I | TCNGA | 6 cut(s) | 61, 94, 194, 270, 558, 737 |
| Hpy188III | TCNNGA | 5 cut(s) | 230, 445, 476, 656, 726 |
| Hpy8I | GTNNAC | 2 cut(s) | 70, 523 |
| HpyAV | CCTTC | 1 cut(s) | 265 |
| HpyCH4III | ACNGT | 3 cut(s) | 150, 162, 694 |
| HpyCH4IV | ACGT | 2 cut(s) | 5, 525 |
| HpyCH4V | TGCA | 2 cut(s) | 355, 686 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 32 |
| HpyF3I | CTNAG | 2 cut(s) | 111, 365 |
| HpySE526I | ACGT | 2 cut(s) | 5, 525 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 5 cut(s) | 278, 379, 448, 536, 659 |
| HspAI | GCGC | 1 cut(s) | 100 |
| Kzo9I | GATC | 3 cut(s) | 89, 265, 358 |
| LguI | GCTCTTC | 1 cut(s) | 392 |
| LmnI | GCTCC | 2 cut(s) | 215, 328 |
| Lsp1109I | GCAGC | 1 cut(s) | 694 |
| LweI | GCATC | 1 cut(s) | 673 |
| MaeI | CTAG | 1 cut(s) | 425 |
| MaeII | ACGT | 2 cut(s) | 5, 525 |
| MaeIII | GTNAC | 2 cut(s) | 19, 205 |
| MalI | GATC | 3 cut(s) | 91, 267, 360 |
| MboI | GATC | 3 cut(s) | 89, 265, 358 |
| MboII | GAAGA | 5 cut(s) | 379, 382, 440, 571, 730 |
| MflI | RGATCY | 1 cut(s) | 358 |
| MlsI | TGGCCA | 1 cut(s) | 128 |
| MluCI | AATT | 3 cut(s) | 379, 513, 597 |
| MluNI | TGGCCA | 1 cut(s) | 128 |
| MlyI | GAGTC | 2 cut(s) | 189, 559 |
| MnlI | CCTC | 4 cut(s) | 53, 90, 120, 293 |
| Mox20I | TGGCCA | 1 cut(s) | 128 |
| MscI | TGGCCA | 1 cut(s) | 128 |
| MseI | TTAA | 2 cut(s) | 222, 293 |
| MslI | CAYNNNNRTG | 2 cut(s) | 84, 374 |
| Msp20I | TGGCCA | 1 cut(s) | 128 |
| MspA1I | CMGCKG | 1 cut(s) | 136 |
| MspI | CCGG | 1 cut(s) | 326 |
| MspR9I | CCNGG | 2 cut(s) | 582, 662 |
| Mva1269I | GAATGC | 1 cut(s) | 369 |
| MvaI | CCWGG | 2 cut(s) | 582, 662 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 32 |
| NdeII | GATC | 3 cut(s) | 89, 265, 358 |
| NlaIII | CATG | 5 cut(s) | 278, 379, 448, 536, 659 |
| NlaIV | GGNNCC | 1 cut(s) | 217 |
| NmuCI | GTSAC | 1 cut(s) | 205 |
| NspV | TTCGAA | 1 cut(s) | 716 |
| PagI | TCATGA | 2 cut(s) | 444, 655 |
| PciSI | GCTCTTC | 1 cut(s) | 392 |
| PctI | GAATGC | 1 cut(s) | 369 |
| PfoI | TCCNGGA | 1 cut(s) | 580 |
| PkrI | GCNGC | 2 cut(s) | 135, 709 |
| PleI | GAGTC | 2 cut(s) | 189, 559 |
| PpsI | GAGTC | 2 cut(s) | 189, 559 |
| Psp6I | CCWGG | 2 cut(s) | 580, 660 |
| PspGI | CCWGG | 2 cut(s) | 580, 660 |
| PspN4I | GGNNCC | 1 cut(s) | 217 |
| PspPI | GGNCC | 1 cut(s) | 302 |
| PstNI | CAGNNNCTG | 1 cut(s) | 59 |
| PsuI | RGATCY | 1 cut(s) | 358 |
| RsaI | GTAC | 1 cut(s) | 238 |
| RsaNI | GTAC | 1 cut(s) | 237 |
| RseI | CAYNNNNRTG | 2 cut(s) | 84, 374 |
| SapI | GCTCTTC | 1 cut(s) | 392 |
| SaqAI | TTAA | 2 cut(s) | 222, 293 |
| SatI | GCNGC | 2 cut(s) | 134, 708 |
| Sau3AI | GATC | 3 cut(s) | 89, 265, 358 |
| Sau96I | GGNCC | 1 cut(s) | 302 |
| SchI | GAGTC | 2 cut(s) | 189, 559 |
| ScrFI | CCNGG | 2 cut(s) | 582, 662 |
| SetI | ASST | 6 cut(s) | 8, 228, 325, 412, 511, 528 |
| SfaNI | GCATC | 1 cut(s) | 673 |
| SfcI | CTRYAG | 1 cut(s) | 335 |
| SfuI | TTCGAA | 1 cut(s) | 716 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 84, 374 |
| Sse9I | AATT | 3 cut(s) | 379, 513, 597 |
| SsiI | CCGC | 2 cut(s) | 134, 464 |
| SspMI | CTAG | 1 cut(s) | 425 |
| StyD4I | CCNGG | 2 cut(s) | 580, 660 |
| TaaI | ACNGT | 3 cut(s) | 150, 162, 694 |
| TaiI | ACGT | 2 cut(s) | 8, 528 |
| TaqI | TCGA | 2 cut(s) | 483, 716 |
| TaqII | GACCGA | 1 cut(s) | 294 |
| TasI | AATT | 3 cut(s) | 379, 513, 597 |
| TauI | GCSGC | 1 cut(s) | 136 |
| Tru1I | TTAA | 2 cut(s) | 222, 293 |
| Tru9I | TTAA | 2 cut(s) | 222, 293 |
| TseFI | GTSAC | 1 cut(s) | 205 |
| TseI | GCWGC | 1 cut(s) | 707 |
| Tsp45I | GTSAC | 1 cut(s) | 205 |
| TspDTI | ATGAA | 3 cut(s) | 392, 461, 644 |
| TspGWI | ACGGA | 1 cut(s) | 37 |
| XapI | RAATTY | 1 cut(s) | 379 |
| XspI | CTAG | 1 cut(s) | 425 |
| ZraI | GACGTC | 1 cut(s) | 6 |