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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 98 |
| AccII | CGCG | 4 cut(s) | 365, 458, 469, 486 |
| AccIII | TCCGGA | 2 cut(s) | 263, 334 |
| AciI | CCGC | 6 cut(s) | 360, 363, 365, 421, 429, 484 |
| AclWI | GGATC | 2 cut(s) | 69, 326 |
| AcoI | YGGCCR | 3 cut(s) | 16, 89, 169 |
| AfaI | GTAC | 2 cut(s) | 149, 350 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 98, 149, 152, 334, 350 |
| AjiI | CACGTC | 1 cut(s) | 159 |
| AluBI | AGCT | 1 cut(s) | 251 |
| AluI | AGCT | 1 cut(s) | 251 |
| Alw26I | GTCTC | 2 cut(s) | 6, 453 |
| AlwI | GGATC | 2 cut(s) | 69, 326 |
| Ama87I | CYCGRG | 1 cut(s) | 433 |
| Aor13HI | TCCGGA | 2 cut(s) | 263, 334 |
| AoxI | GGCC | 9 cut(s) | 6, 16, 89, 169, 205, 292, 300, 325, 352 |
| ApeKI | GCWGC | 2 cut(s) | 52, 112 |
| AspLEI | GCGC | 3 cut(s) | 140, 460, 471 |
| AspS9I | GGNCC | 4 cut(s) | 6, 293, 325, 353 |
| AsuC2I | CCSGG | 3 cut(s) | 28, 117, 282 |
| AsuHPI | GGTGA | 1 cut(s) | 332 |
| AvaI | CYCGRG | 1 cut(s) | 433 |
| BbvI | GCAGC | 2 cut(s) | 64, 99 |
| BccI | CCATC | 2 cut(s) | 304, 364 |
| BceAI | ACGGC | 3 cut(s) | 31, 367, 401 |
| BcnI | CCSGG | 3 cut(s) | 28, 117, 282 |
| BcoDI | GTCTC | 2 cut(s) | 6, 453 |
| BfmI | CTRYAG | 1 cut(s) | 50 |
| BfoI | RGCGCY | 1 cut(s) | 141 |
| BisI | GCNGC | 5 cut(s) | 53, 113, 363, 366, 429 |
| BlsI | GCNGC | 5 cut(s) | 54, 114, 364, 367, 430 |
| Bme1390I | CCNGG | 3 cut(s) | 28, 117, 282 |
| BmeT110I | CYCGRG | 1 cut(s) | 433 |
| BmgBI | CACGTC | 1 cut(s) | 159 |
| BmgT120I | GGNCC | 4 cut(s) | 6, 293, 325, 353 |
| BmiI | GGNNCC | 1 cut(s) | 7 |
| BmrFI | CCNGG | 3 cut(s) | 28, 117, 282 |
| BpuMI | CCSGG | 3 cut(s) | 28, 117, 282 |
| BsaAI | YACGTR | 1 cut(s) | 348 |
| BsaI | GGTCTC | 1 cut(s) | 453 |
| BsaJI | CCNNGG | 4 cut(s) | 78, 107, 116, 363 |
| BsaWI | WCCGGW | 4 cut(s) | 212, 263, 334, 444 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 446, 476 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 98, 149, 152, 334, 350 |
| BseAI | TCCGGA | 2 cut(s) | 263, 334 |
| BseDI | CCNNGG | 4 cut(s) | 78, 107, 116, 363 |
| BseGI | GGATG | 1 cut(s) | 356 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 98, 149, 152, 334, 350 |
| BseRI | GAGGAG | 6 cut(s) | 74, 132, 147, 216, 251, 441 |
| BseX3I | CGGCCG | 1 cut(s) | 16 |
| BseXI | GCAGC | 2 cut(s) | 64, 99 |
| BseYI | CCCAGC | 1 cut(s) | 251 |
| Bsh1236I | CGCG | 4 cut(s) | 365, 458, 469, 486 |
| Bsh1285I | CGRYCG | 1 cut(s) | 19 |
| BshFI | GGCC | 9 cut(s) | 8, 18, 91, 171, 207, 294, 302, 327, 354 |
| BsiEI | CGRYCG | 1 cut(s) | 19 |
| BsiHKCI | CYCGRG | 1 cut(s) | 433 |
| BsiWI | CGTACG | 2 cut(s) | 147, 348 |
| BslFI | GGGAC | 2 cut(s) | 27, 357 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 98, 149, 152, 334, 350 |
| BsmAI | GTCTC | 2 cut(s) | 6, 453 |
| BsmBI | CGTCTC | 1 cut(s) | 6 |
| BsmFI | GGGAC | 2 cut(s) | 27, 357 |
| BsnI | GGCC | 9 cut(s) | 8, 18, 91, 171, 207, 294, 302, 327, 354 |
| Bso31I | GGTCTC | 1 cut(s) | 453 |
| BsoBI | CYCGRG | 1 cut(s) | 433 |
| Bsp13I | TCCGGA | 2 cut(s) | 263, 334 |
| Bsp143I | GATC | 3 cut(s) | 74, 225, 331 |
| BspACI | CCGC | 6 cut(s) | 360, 363, 365, 421, 429, 484 |
| BspANI | GGCC | 9 cut(s) | 8, 18, 91, 171, 207, 294, 302, 327, 354 |
| BspEI | TCCGGA | 2 cut(s) | 263, 334 |
| BspFNI | CGCG | 4 cut(s) | 365, 458, 469, 486 |
| BspLI | GGNNCC | 1 cut(s) | 7 |
| BspMAI | CTGCAG | 1 cut(s) | 54 |
| BspPI | GGATC | 2 cut(s) | 69, 326 |
| BspTNI | GGTCTC | 1 cut(s) | 453 |
| BssECI | CCNNGG | 4 cut(s) | 78, 107, 116, 363 |
| BssMI | GATC | 3 cut(s) | 74, 225, 331 |
| BssT1I | CCWWGG | 1 cut(s) | 107 |
| Bst4CI | ACNGT | 2 cut(s) | 152, 320 |
| BstBAI | YACGTR | 1 cut(s) | 348 |
| BstDSI | CCRYGG | 2 cut(s) | 78, 363 |
| BstF5I | GGATG | 1 cut(s) | 356 |
| BstFNI | CGCG | 4 cut(s) | 365, 458, 469, 486 |
| BstH2I | RGCGCY | 1 cut(s) | 141 |
| BstHHI | GCGC | 3 cut(s) | 140, 460, 471 |
| BstKTI | GATC | 3 cut(s) | 77, 228, 334 |
| BstMAI | GTCTC | 2 cut(s) | 6, 453 |
| BstMBI | GATC | 3 cut(s) | 74, 225, 331 |
| BstMCI | CGRYCG | 1 cut(s) | 19 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 177, 466 |
| BstSCI | CCNGG | 3 cut(s) | 26, 115, 280 |
| BstSFI | CTRYAG | 1 cut(s) | 50 |
| BstUI | CGCG | 4 cut(s) | 365, 458, 469, 486 |
| BstV1I | GCAGC | 2 cut(s) | 64, 99 |
| BstZI | CGGCCG | 1 cut(s) | 16 |
| BsuRI | GGCC | 9 cut(s) | 8, 18, 91, 171, 207, 294, 302, 327, 354 |
| BtgI | CCRYGG | 2 cut(s) | 78, 363 |
| BtrI | CACGTC | 1 cut(s) | 159 |
| BtsCI | GGATG | 1 cut(s) | 356 |
| CfoI | GCGC | 3 cut(s) | 140, 460, 471 |
| Cfr13I | GGNCC | 4 cut(s) | 6, 293, 325, 353 |
| Cfr42I | CCGCGG | 1 cut(s) | 366 |
| Csp6I | GTAC | 2 cut(s) | 148, 349 |
| CviQI | GTAC | 2 cut(s) | 148, 349 |
| DpnI | GATC | 3 cut(s) | 76, 227, 333 |
| DpnII | GATC | 3 cut(s) | 74, 225, 331 |
| EaeI | YGGCCR | 3 cut(s) | 16, 89, 169 |
| EagI | CGGCCG | 1 cut(s) | 16 |
| EciI | GGCGGA | 2 cut(s) | 349, 410 |
| EclXI | CGGCCG | 1 cut(s) | 16 |
| Eco130I | CCWWGG | 1 cut(s) | 107 |
| Eco31I | GGTCTC | 1 cut(s) | 453 |
| Eco52I | CGGCCG | 1 cut(s) | 16 |
| Eco88I | CYCGRG | 1 cut(s) | 433 |
| EcoO109I | RGGNCCY | 1 cut(s) | 325 |
| EcoT14I | CCWWGG | 1 cut(s) | 107 |
| ErhI | CCWWGG | 1 cut(s) | 107 |
| Esp3I | CGTCTC | 1 cut(s) | 6 |
| FaiI | YATR | 1 cut(s) | 165 |
| FaqI | GGGAC | 2 cut(s) | 27, 357 |
| Fnu4HI | GCNGC | 5 cut(s) | 53, 113, 363, 366, 429 |
| FokI | GGATG | 1 cut(s) | 343 |
| Fsp4HI | GCNGC | 5 cut(s) | 53, 113, 363, 366, 429 |
| GlaI | GCGC | 3 cut(s) | 139, 459, 470 |
| GluI | GCNGC | 5 cut(s) | 53, 113, 363, 366, 429 |
| GsaI | CCCAGC | 1 cut(s) | 255 |
| HaeII | RGCGCY | 1 cut(s) | 141 |
| HaeIII | GGCC | 9 cut(s) | 8, 18, 91, 171, 207, 294, 302, 327, 354 |
| HhaI | GCGC | 3 cut(s) | 140, 460, 471 |
| Hin6I | GCGC | 3 cut(s) | 138, 458, 469 |
| HinP1I | GCGC | 3 cut(s) | 138, 458, 469 |
| HinfI | GANTC | 6 cut(s) | 21, 31, 175, 184, 397, 438 |
| HphI | GGTGA | 1 cut(s) | 332 |
| Hpy188I | TCNGA | 3 cut(s) | 127, 189, 494 |
| Hpy188III | TCNNGA | 3 cut(s) | 264, 335, 435 |
| HpyAV | CCTTC | 2 cut(s) | 191, 385 |
| HpyCH4III | ACNGT | 2 cut(s) | 152, 320 |
| HpyCH4IV | ACGT | 2 cut(s) | 158, 347 |
| HpyCH4V | TGCA | 1 cut(s) | 52 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 177, 466 |
| HpySE526I | ACGT | 2 cut(s) | 158, 347 |
| HspAI | GCGC | 3 cut(s) | 138, 458, 469 |
| Kpn2I | TCCGGA | 2 cut(s) | 263, 334 |
| KspI | CCGCGG | 1 cut(s) | 366 |
| Kzo9I | GATC | 3 cut(s) | 74, 225, 331 |
| LmnI | GCTCC | 1 cut(s) | 145 |
| Lsp1109I | GCAGC | 2 cut(s) | 64, 99 |
| MaeII | ACGT | 2 cut(s) | 158, 347 |
| MalI | GATC | 3 cut(s) | 76, 227, 333 |
| MboI | GATC | 3 cut(s) | 74, 225, 331 |
| MroI | TCCGGA | 2 cut(s) | 263, 334 |
| MseI | TTAA | 1 cut(s) | 502 |
| MspA1I | CMGCKG | 1 cut(s) | 365 |
| MspR9I | CCNGG | 3 cut(s) | 28, 117, 282 |
| MvnI | CGCG | 4 cut(s) | 365, 458, 469, 486 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 177, 466 |
| NciI | CCSGG | 3 cut(s) | 28, 117, 282 |
| NdeII | GATC | 3 cut(s) | 74, 225, 331 |
| NlaIV | GGNNCC | 1 cut(s) | 7 |
| NmeAIII | GCCGAG | 1 cut(s) | 270 |
| PaeR7I | CTCGAG | 1 cut(s) | 433 |
| PfeI | GAWTC | 6 cut(s) | 21, 31, 175, 184, 397, 438 |
| Pfl23II | CGTACG | 2 cut(s) | 147, 348 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 98 |
| PkrI | GCNGC | 5 cut(s) | 54, 114, 364, 367, 430 |
| Ppu21I | YACGTR | 1 cut(s) | 348 |
| PspFI | CCCAGC | 1 cut(s) | 251 |
| PspLI | CGTACG | 2 cut(s) | 147, 348 |
| PspN4I | GGNNCC | 1 cut(s) | 7 |
| PspPI | GGNCC | 4 cut(s) | 6, 293, 325, 353 |
| PstI | CTGCAG | 1 cut(s) | 54 |
| RsaI | GTAC | 2 cut(s) | 149, 350 |
| RsaNI | GTAC | 2 cut(s) | 148, 349 |
| SacII | CCGCGG | 1 cut(s) | 366 |
| SaqAI | TTAA | 1 cut(s) | 502 |
| SatI | GCNGC | 5 cut(s) | 53, 113, 363, 366, 429 |
| Sau3AI | GATC | 3 cut(s) | 74, 225, 331 |
| Sau96I | GGNCC | 4 cut(s) | 6, 293, 325, 353 |
| ScrFI | CCNGG | 3 cut(s) | 28, 117, 282 |
| SetI | ASST | 5 cut(s) | 66, 161, 253, 279, 350 |
| SfcI | CTRYAG | 1 cut(s) | 50 |
| Sfr274I | CTCGAG | 1 cut(s) | 433 |
| Sfr303I | CCGCGG | 1 cut(s) | 366 |
| SgrBI | CCGCGG | 1 cut(s) | 366 |
| SlaI | CTCGAG | 1 cut(s) | 433 |
| SmlI | CTYRAG | 1 cut(s) | 433 |
| SmoI | CTYRAG | 1 cut(s) | 433 |
| SsiI | CCGC | 6 cut(s) | 360, 363, 365, 421, 429, 484 |
| StyD4I | CCNGG | 3 cut(s) | 26, 115, 280 |
| StyI | CCWWGG | 1 cut(s) | 107 |
| TaaI | ACNGT | 2 cut(s) | 152, 320 |
| TaiI | ACGT | 2 cut(s) | 161, 350 |
| TaqI | TCGA | 2 cut(s) | 73, 434 |
| TauI | GCSGC | 3 cut(s) | 365, 368, 431 |
| TfiI | GAWTC | 6 cut(s) | 21, 31, 175, 184, 397, 438 |
| Tru1I | TTAA | 1 cut(s) | 502 |
| Tru9I | TTAA | 1 cut(s) | 502 |
| TseI | GCWGC | 2 cut(s) | 52, 112 |
| TspGWI | ACGGA | 4 cut(s) | 67, 135, 368, 403 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 98 |
| XhoI | CTCGAG | 1 cut(s) | 433 |