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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 356, 574 |
| AccII | CGCG | 1 cut(s) | 98 |
| AciI | CCGC | 5 cut(s) | 96, 98, 257, 471, 640 |
| AclWI | GGATC | 1 cut(s) | 46 |
| AcsI | RAATTY | 1 cut(s) | 647 |
| AcuI | CTGAAG | 2 cut(s) | 509, 645 |
| AcyI | GRCGYC | 1 cut(s) | 571 |
| AfaI | GTAC | 3 cut(s) | 65, 162, 400 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 256 |
| AgeI | ACCGGT | 1 cut(s) | 104 |
| AgsI | TTSAA | 1 cut(s) | 55 |
| AluBI | AGCT | 2 cut(s) | 406, 448 |
| AluI | AGCT | 2 cut(s) | 406, 448 |
| AlwI | GGATC | 1 cut(s) | 46 |
| Ama87I | CYCGRG | 2 cut(s) | 333, 499 |
| AoxI | GGCC | 2 cut(s) | 93, 679 |
| ApaI | GGGCCC | 1 cut(s) | 683 |
| ApeKI | GCWGC | 2 cut(s) | 254, 406 |
| ApoI | RAATTY | 1 cut(s) | 647 |
| AsiGI | ACCGGT | 1 cut(s) | 104 |
| AspA2I | CCTAGG | 1 cut(s) | 218 |
| AspS9I | GGNCC | 5 cut(s) | 478, 636, 670, 679, 680 |
| AsuC2I | CCSGG | 3 cut(s) | 500, 501, 620 |
| AvaI | CYCGRG | 2 cut(s) | 333, 499 |
| AvaII | GGWCC | 3 cut(s) | 478, 636, 670 |
| AvrII | CCTAGG | 1 cut(s) | 218 |
| BaeGI | GKGCMC | 1 cut(s) | 683 |
| BanII | GRGCYC | 1 cut(s) | 683 |
| BbvI | GCAGC | 2 cut(s) | 241, 393 |
| BccI | CCATC | 2 cut(s) | 54, 386 |
| BcnI | CCSGG | 3 cut(s) | 500, 501, 620 |
| BfaI | CTAG | 5 cut(s) | 17, 177, 219, 414, 512 |
| BisI | GCNGC | 3 cut(s) | 96, 255, 407 |
| BlnI | CCTAGG | 1 cut(s) | 218 |
| BlpI | GCTNAGC | 1 cut(s) | 300 |
| BlsI | GCNGC | 3 cut(s) | 97, 256, 408 |
| Bme1390I | CCNGG | 3 cut(s) | 500, 501, 620 |
| Bme18I | GGWCC | 3 cut(s) | 478, 636, 670 |
| BmeT110I | CYCGRG | 2 cut(s) | 333, 499 |
| BmgT120I | GGNCC | 5 cut(s) | 478, 636, 670, 679, 680 |
| BmiI | GGNNCC | 3 cut(s) | 638, 680, 681 |
| BmrFI | CCNGG | 3 cut(s) | 500, 501, 620 |
| BmsI | GCATC | 4 cut(s) | 139, 218, 264, 444 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 300 |
| BpuMI | CCSGG | 3 cut(s) | 500, 501, 620 |
| BsaBI | GATNNNNATC | 1 cut(s) | 153 |
| BsaHI | GRCGYC | 1 cut(s) | 571 |
| BsaJI | CCNNGG | 5 cut(s) | 96, 218, 474, 481, 499 |
| BsaWI | WCCGGW | 1 cut(s) | 104 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 123, 153, 309, 339, 358, 388 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 256 |
| Bse118I | RCCGGY | 1 cut(s) | 104 |
| Bse8I | GATNNNNATC | 1 cut(s) | 153 |
| BseDI | CCNNGG | 5 cut(s) | 96, 218, 474, 481, 499 |
| BseGI | GGATG | 4 cut(s) | 46, 154, 432, 433 |
| BseJI | GATNNNNATC | 1 cut(s) | 153 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 256 |
| BseMII | CTCAG | 1 cut(s) | 314 |
| BseSI | GKGCMC | 1 cut(s) | 683 |
| BseXI | GCAGC | 2 cut(s) | 241, 393 |
| Bsh1236I | CGCG | 1 cut(s) | 98 |
| BshFI | GGCC | 2 cut(s) | 95, 681 |
| BshTI | ACCGGT | 1 cut(s) | 104 |
| BsiHKCI | CYCGRG | 2 cut(s) | 333, 499 |
| BsiSI | CCGG | 3 cut(s) | 105, 500, 620 |
| BslFI | GGGAC | 1 cut(s) | 602 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 256 |
| BsmFI | GGGAC | 1 cut(s) | 602 |
| BsnI | GGCC | 2 cut(s) | 95, 681 |
| BsoBI | CYCGRG | 2 cut(s) | 333, 499 |
| Bsp120I | GGGCCC | 1 cut(s) | 679 |
| Bsp1286I | GDGCHC | 1 cut(s) | 683 |
| Bsp143I | GATC | 1 cut(s) | 38 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 300 |
| Bsp19I | CCATGG | 1 cut(s) | 481 |
| BspACI | CCGC | 5 cut(s) | 96, 98, 257, 471, 640 |
| BspANI | GGCC | 2 cut(s) | 95, 681 |
| BspCNI | CTCAG | 1 cut(s) | 313 |
| BspFNI | CGCG | 1 cut(s) | 98 |
| BspLI | GGNNCC | 3 cut(s) | 638, 680, 681 |
| BspPI | GGATC | 1 cut(s) | 46 |
| BsrFI | RCCGGY | 1 cut(s) | 104 |
| BssAI | RCCGGY | 1 cut(s) | 104 |
| BssECI | CCNNGG | 5 cut(s) | 96, 218, 474, 481, 499 |
| BssMI | GATC | 1 cut(s) | 38 |
| BssNI | GRCGYC | 1 cut(s) | 571 |
| BssT1I | CCWWGG | 3 cut(s) | 218, 474, 481 |
| Bst4CI | ACNGT | 2 cut(s) | 169, 370 |
| BstACI | GRCGYC | 1 cut(s) | 571 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 296 |
| BstC8I | GCNNGC | 1 cut(s) | 411 |
| BstDEI | CTNAG | 2 cut(s) | 300, 687 |
| BstDSI | CCRYGG | 2 cut(s) | 96, 481 |
| BstF5I | GGATG | 4 cut(s) | 46, 154, 432, 433 |
| BstFNI | CGCG | 1 cut(s) | 98 |
| BstKTI | GATC | 1 cut(s) | 41 |
| BstMBI | GATC | 1 cut(s) | 38 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 296, 326, 454 |
| BstSCI | CCNGG | 3 cut(s) | 498, 499, 618 |
| BstSLI | GKGCMC | 1 cut(s) | 683 |
| BstUI | CGCG | 1 cut(s) | 98 |
| BstV1I | GCAGC | 2 cut(s) | 241, 393 |
| BsuRI | GGCC | 2 cut(s) | 95, 681 |
| BtgI | CCRYGG | 2 cut(s) | 96, 481 |
| BtsCI | GGATG | 4 cut(s) | 46, 154, 432, 433 |
| BtsI | GCAGTG | 1 cut(s) | 553 |
| BtsIMutI | CAGTG | 2 cut(s) | 366, 553 |
| Cac8I | GCNNGC | 1 cut(s) | 411 |
| Cfr10I | RCCGGY | 1 cut(s) | 104 |
| Cfr13I | GGNCC | 5 cut(s) | 478, 636, 670, 679, 680 |
| Cfr42I | CCGCGG | 1 cut(s) | 99 |
| Cfr9I | CCCGGG | 1 cut(s) | 499 |
| CseI | GACGC | 2 cut(s) | 125, 560 |
| Csp6I | GTAC | 3 cut(s) | 64, 161, 399 |
| CspAI | ACCGGT | 1 cut(s) | 104 |
| CviAII | CATG | 4 cut(s) | 34, 202, 421, 482 |
| CviJI | RGCY | 9 cut(s) | 8, 95, 269, 329, 406, 448, 487, 623, 681 |
| CviKI_1 | RGCY | 9 cut(s) | 8, 95, 269, 329, 406, 448, 487, 623, 681 |
| CviQI | GTAC | 3 cut(s) | 64, 161, 399 |
| DdeI | CTNAG | 2 cut(s) | 300, 687 |
| DpnI | GATC | 1 cut(s) | 40 |
| DpnII | GATC | 1 cut(s) | 38 |
| DraI | TTTAAA | 1 cut(s) | 555 |
| Eco130I | CCWWGG | 3 cut(s) | 218, 474, 481 |
| Eco24I | GRGCYC | 1 cut(s) | 683 |
| Eco32I | GATATC | 1 cut(s) | 609 |
| Eco47I | GGWCC | 3 cut(s) | 478, 636, 670 |
| Eco57I | CTGAAG | 2 cut(s) | 509, 645 |
| Eco88I | CYCGRG | 2 cut(s) | 333, 499 |
| EcoO109I | RGGNCCY | 2 cut(s) | 636, 679 |
| EcoRV | GATATC | 1 cut(s) | 609 |
| EcoT14I | CCWWGG | 3 cut(s) | 218, 474, 481 |
| EcoT38I | GRGCYC | 1 cut(s) | 683 |
| ErhI | CCWWGG | 3 cut(s) | 218, 474, 481 |
| FaeI | CATG | 4 cut(s) | 37, 205, 424, 485 |
| FaiI | YATR | 6 cut(s) | 35, 113, 146, 203, 422, 483 |
| FaqI | GGGAC | 1 cut(s) | 602 |
| FatI | CATG | 4 cut(s) | 33, 201, 420, 481 |
| FauI | CCCGC | 1 cut(s) | 647 |
| FblI | GTMKAC | 2 cut(s) | 356, 574 |
| Fnu4HI | GCNGC | 3 cut(s) | 96, 255, 407 |
| FokI | GGATG | 4 cut(s) | 33, 161, 419, 440 |
| FriOI | GRGCYC | 1 cut(s) | 683 |
| Fsp4HI | GCNGC | 3 cut(s) | 96, 255, 407 |
| FspBI | CTAG | 5 cut(s) | 17, 177, 219, 414, 512 |
| GluI | GCNGC | 3 cut(s) | 96, 255, 407 |
| HaeIII | GGCC | 2 cut(s) | 95, 681 |
| HapII | CCGG | 3 cut(s) | 105, 500, 620 |
| HgaI | GACGC | 2 cut(s) | 125, 560 |
| Hin1I | GRCGYC | 1 cut(s) | 571 |
| Hin1II | CATG | 4 cut(s) | 37, 205, 424, 485 |
| HinfI | GANTC | 4 cut(s) | 23, 134, 507, 515 |
| HpaII | CCGG | 3 cut(s) | 105, 500, 620 |
| Hpy166II | GTNNAC | 5 cut(s) | 184, 340, 357, 468, 575 |
| Hpy188I | TCNGA | 4 cut(s) | 126, 214, 657, 664 |
| Hpy8I | GTNNAC | 5 cut(s) | 184, 340, 357, 468, 575 |
| HpyAV | CCTTC | 3 cut(s) | 74, 345, 484 |
| HpyCH4III | ACNGT | 2 cut(s) | 169, 370 |
| HpyCH4V | TGCA | 5 cut(s) | 13, 152, 209, 277, 535 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 296, 326, 454 |
| HpyF3I | CTNAG | 2 cut(s) | 300, 687 |
| Hsp92I | GRCGYC | 1 cut(s) | 571 |
| Hsp92II | CATG | 4 cut(s) | 37, 205, 424, 485 |
| KspI | CCGCGG | 1 cut(s) | 99 |
| Kzo9I | GATC | 1 cut(s) | 38 |
| LmnI | GCTCC | 1 cut(s) | 317 |
| Lsp1109I | GCAGC | 2 cut(s) | 241, 393 |
| LweI | GCATC | 4 cut(s) | 139, 218, 264, 444 |
| MaeI | CTAG | 5 cut(s) | 17, 177, 219, 414, 512 |
| MaeIII | GTNAC | 1 cut(s) | 416 |
| MalI | GATC | 1 cut(s) | 40 |
| MboI | GATC | 1 cut(s) | 38 |
| MboII | GAAGA | 2 cut(s) | 571, 638 |
| MhlI | GDGCHC | 1 cut(s) | 683 |
| MluCI | AATT | 1 cut(s) | 647 |
| MlyI | GAGTC | 2 cut(s) | 501, 509 |
| MnlI | CCTC | 8 cut(s) | 13, 307, 339, 418, 497, 560, 658, 663 |
| MseI | TTAA | 2 cut(s) | 441, 554 |
| MspA1I | CMGCKG | 1 cut(s) | 98 |
| MspI | CCGG | 3 cut(s) | 105, 500, 620 |
| MspR9I | CCNGG | 3 cut(s) | 500, 501, 620 |
| MvnI | CGCG | 1 cut(s) | 98 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 296, 326, 454 |
| NciI | CCSGG | 3 cut(s) | 500, 501, 620 |
| NcoI | CCATGG | 1 cut(s) | 481 |
| NdeII | GATC | 1 cut(s) | 38 |
| NlaIII | CATG | 4 cut(s) | 37, 205, 424, 485 |
| NlaIV | GGNNCC | 3 cut(s) | 638, 680, 681 |
| NmeAIII | GCCGAG | 1 cut(s) | 295 |
| NmuCI | GTSAC | 1 cut(s) | 416 |
| PfeI | GAWTC | 2 cut(s) | 23, 134 |
| PinAI | ACCGGT | 1 cut(s) | 104 |
| PkrI | GCNGC | 3 cut(s) | 97, 256, 408 |
| PleI | GAGTC | 2 cut(s) | 501, 509 |
| PpsI | GAGTC | 2 cut(s) | 501, 509 |
| PpuMI | RGGWCCY | 1 cut(s) | 636 |
| Psp5II | RGGWCCY | 1 cut(s) | 636 |
| PspN4I | GGNNCC | 3 cut(s) | 638, 680, 681 |
| PspOMI | GGGCCC | 1 cut(s) | 679 |
| PspPI | GGNCC | 5 cut(s) | 478, 636, 670, 679, 680 |
| PspPPI | RGGWCCY | 1 cut(s) | 636 |
| RsaI | GTAC | 3 cut(s) | 65, 162, 400 |
| RsaNI | GTAC | 3 cut(s) | 64, 161, 399 |
| SacII | CCGCGG | 1 cut(s) | 99 |
| SaqAI | TTAA | 2 cut(s) | 441, 554 |
| SatI | GCNGC | 3 cut(s) | 96, 255, 407 |
| Sau3AI | GATC | 1 cut(s) | 38 |
| Sau96I | GGNCC | 5 cut(s) | 478, 636, 670, 679, 680 |
| SchI | GAGTC | 2 cut(s) | 501, 509 |
| ScrFI | CCNGG | 3 cut(s) | 500, 501, 620 |
| SduI | GDGCHC | 1 cut(s) | 683 |
| SetI | ASST | 9 cut(s) | 162, 220, 356, 408, 450, 467, 480, 669, 688 |
| SfaNI | GCATC | 4 cut(s) | 139, 218, 264, 444 |
| Sfr303I | CCGCGG | 1 cut(s) | 99 |
| SgrBI | CCGCGG | 1 cut(s) | 99 |
| SinI | GGWCC | 3 cut(s) | 478, 636, 670 |
| SmaI | CCCGGG | 1 cut(s) | 501 |
| Sse9I | AATT | 1 cut(s) | 647 |
| SsiI | CCGC | 5 cut(s) | 96, 98, 257, 471, 640 |
| SspMI | CTAG | 5 cut(s) | 17, 177, 219, 414, 512 |
| StyD4I | CCNGG | 3 cut(s) | 498, 499, 618 |
| StyI | CCWWGG | 3 cut(s) | 218, 474, 481 |
| TaaI | ACNGT | 2 cut(s) | 169, 370 |
| TaqI | TCGA | 2 cut(s) | 41, 228 |
| TasI | AATT | 1 cut(s) | 647 |
| TatI | WGTACW | 1 cut(s) | 63 |
| TauI | GCSGC | 1 cut(s) | 98 |
| TfiI | GAWTC | 2 cut(s) | 23, 134 |
| Tru1I | TTAA | 2 cut(s) | 441, 554 |
| Tru9I | TTAA | 2 cut(s) | 441, 554 |
| TscAI | CASTG | 2 cut(s) | 373, 553 |
| TseFI | GTSAC | 1 cut(s) | 416 |
| TseI | GCWGC | 2 cut(s) | 254, 406 |
| Tsp45I | GTSAC | 1 cut(s) | 416 |
| TspDTI | ATGAA | 1 cut(s) | 401 |
| TspMI | CCCGGG | 1 cut(s) | 499 |
| TspRI | CASTG | 2 cut(s) | 373, 553 |
| VpaK11BI | GGWCC | 3 cut(s) | 478, 636, 670 |
| XapI | RAATTY | 1 cut(s) | 647 |
| XmaI | CCCGGG | 1 cut(s) | 499 |
| XmaJI | CCTAGG | 1 cut(s) | 218 |
| XmiI | GTMKAC | 2 cut(s) | 356, 574 |
| XspI | CTAG | 5 cut(s) | 17, 177, 219, 414, 512 |