Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 619 |
| AciI | CCGC | 2 cut(s) | 146, 619 |
| AcsI | RAATTY | 2 cut(s) | 12, 578 |
| AcuI | CTGAAG | 1 cut(s) | 594 |
| AfaI | GTAC | 2 cut(s) | 131, 152 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 491 |
| AgsI | TTSAA | 7 cut(s) | 10, 17, 103, 215, 577, 593, 740 |
| AjnI | CCWGG | 2 cut(s) | 111, 366 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 557, 589 |
| AluBI | AGCT | 3 cut(s) | 361, 596, 746 |
| AluI | AGCT | 3 cut(s) | 361, 596, 746 |
| Alw26I | GTCTC | 5 cut(s) | 57, 228, 440, 580, 627 |
| AoxI | GGCC | 4 cut(s) | 23, 89, 322, 656 |
| ApeKI | GCWGC | 2 cut(s) | 242, 743 |
| ApoI | RAATTY | 2 cut(s) | 12, 578 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 266, 298 |
| AspLEI | GCGC | 2 cut(s) | 99, 145 |
| AspS9I | GGNCC | 4 cut(s) | 89, 530, 640, 730 |
| AsuHPI | GGTGA | 1 cut(s) | 623 |
| AsuNHI | GCTAGC | 1 cut(s) | 361 |
| AvaII | GGWCC | 3 cut(s) | 530, 640, 730 |
| BbsI | GAAGAC | 1 cut(s) | 222 |
| BbvI | GCAGC | 2 cut(s) | 229, 755 |
| BccI | CCATC | 3 cut(s) | 464, 484, 541 |
| BceAI | ACGGC | 3 cut(s) | 76, 133, 337 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 122, 156 |
| BciT130I | CCWGG | 2 cut(s) | 113, 368 |
| BcoDI | GTCTC | 5 cut(s) | 57, 228, 440, 580, 627 |
| BfaI | CTAG | 1 cut(s) | 362 |
| BfoI | RGCGCY | 1 cut(s) | 100 |
| BisI | GCNGC | 3 cut(s) | 146, 243, 744 |
| BlpI | GCTNAGC | 1 cut(s) | 747 |
| BlsI | GCNGC | 3 cut(s) | 147, 244, 745 |
| Bme1390I | CCNGG | 2 cut(s) | 113, 368 |
| Bme18I | GGWCC | 3 cut(s) | 530, 640, 730 |
| BmgT120I | GGNCC | 4 cut(s) | 89, 530, 640, 730 |
| BmiI | GGNNCC | 1 cut(s) | 732 |
| BmrFI | CCNGG | 2 cut(s) | 113, 368 |
| BmtI | GCTAGC | 1 cut(s) | 365 |
| BpiI | GAAGAC | 1 cut(s) | 222 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 747 |
| BsaI | GGTCTC | 1 cut(s) | 627 |
| BsaJI | CCNNGG | 6 cut(s) | 92, 111, 366, 367, 485, 720 |
| BsaWI | WCCGGW | 1 cut(s) | 502 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 311, 341 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 491 |
| Bse1I | ACTGG | 3 cut(s) | 71, 454, 659 |
| Bse3DI | GCAATG | 4 cut(s) | 42, 168, 237, 557 |
| BseBI | CCWGG | 2 cut(s) | 113, 368 |
| BseDI | CCNNGG | 6 cut(s) | 92, 111, 366, 367, 485, 720 |
| BseGI | GGATG | 2 cut(s) | 277, 495 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 491 |
| BseMI | GCAATG | 4 cut(s) | 42, 168, 237, 557 |
| BseMII | CTCAG | 3 cut(s) | 168, 243, 530 |
| BseNI | ACTGG | 3 cut(s) | 71, 454, 659 |
| BseRI | GAGGAG | 2 cut(s) | 99, 364 |
| BseXI | GCAGC | 2 cut(s) | 229, 755 |
| Bsh1236I | CGCG | 1 cut(s) | 619 |
| BshFI | GGCC | 4 cut(s) | 25, 91, 324, 658 |
| BsiSI | CCGG | 1 cut(s) | 503 |
| BslFI | GGGAC | 1 cut(s) | 716 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 491 |
| BsmAI | GTCTC | 5 cut(s) | 57, 228, 440, 580, 627 |
| BsmFI | GGGAC | 1 cut(s) | 716 |
| BsmI | GAATGC | 1 cut(s) | 172 |
| BsnI | GGCC | 4 cut(s) | 25, 91, 324, 658 |
| Bso31I | GGTCTC | 1 cut(s) | 627 |
| Bsp143I | GATC | 2 cut(s) | 522, 686 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 747 |
| BspACI | CCGC | 2 cut(s) | 146, 619 |
| BspANI | GGCC | 4 cut(s) | 25, 91, 324, 658 |
| BspCNI | CTCAG | 3 cut(s) | 167, 244, 531 |
| BspFNI | CGCG | 1 cut(s) | 619 |
| BspLI | GGNNCC | 1 cut(s) | 732 |
| BspOI | GCTAGC | 1 cut(s) | 365 |
| BspTNI | GGTCTC | 1 cut(s) | 627 |
| BsrDI | GCAATG | 4 cut(s) | 42, 168, 237, 557 |
| BsrI | ACTGG | 3 cut(s) | 71, 454, 659 |
| BssECI | CCNNGG | 6 cut(s) | 92, 111, 366, 367, 485, 720 |
| BssMI | GATC | 2 cut(s) | 522, 686 |
| BssT1I | CCWWGG | 2 cut(s) | 485, 720 |
| Bst2UI | CCWGG | 2 cut(s) | 113, 368 |
| Bst6I | CTCTTC | 1 cut(s) | 375 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 1 cut(s) | 363 |
| BstDEI | CTNAG | 4 cut(s) | 154, 252, 539, 747 |
| BstDSI | CCRYGG | 1 cut(s) | 92 |
| BstF5I | GGATG | 2 cut(s) | 277, 495 |
| BstFNI | CGCG | 1 cut(s) | 619 |
| BstH2I | RGCGCY | 1 cut(s) | 100 |
| BstHHI | GCGC | 2 cut(s) | 99, 145 |
| BstKTI | GATC | 2 cut(s) | 525, 689 |
| BstMAI | GTCTC | 5 cut(s) | 57, 228, 440, 580, 627 |
| BstMBI | GATC | 2 cut(s) | 522, 686 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 681, 757 |
| BstNI | CCWGG | 2 cut(s) | 113, 368 |
| BstSCI | CCNGG | 2 cut(s) | 111, 366 |
| BstUI | CGCG | 1 cut(s) | 619 |
| BstV1I | GCAGC | 2 cut(s) | 229, 755 |
| BstV2I | GAAGAC | 1 cut(s) | 222 |
| BsuRI | GGCC | 4 cut(s) | 25, 91, 324, 658 |
| BtgI | CCRYGG | 1 cut(s) | 92 |
| BtsCI | GGATG | 2 cut(s) | 277, 495 |
| Cac8I | GCNNGC | 1 cut(s) | 363 |
| CfoI | GCGC | 2 cut(s) | 99, 145 |
| Cfr13I | GGNCC | 4 cut(s) | 89, 530, 640, 730 |
| Csp6I | GTAC | 2 cut(s) | 130, 151 |
| CviAII | CATG | 1 cut(s) | 757 |
| CviQI | GTAC | 2 cut(s) | 130, 151 |
| DdeI | CTNAG | 4 cut(s) | 154, 252, 539, 747 |
| DpnI | GATC | 2 cut(s) | 524, 688 |
| DpnII | GATC | 2 cut(s) | 522, 686 |
| Eam1104I | CTCTTC | 1 cut(s) | 375 |
| EarI | CTCTTC | 1 cut(s) | 375 |
| Eco130I | CCWWGG | 2 cut(s) | 485, 720 |
| Eco31I | GGTCTC | 1 cut(s) | 627 |
| Eco47I | GGWCC | 3 cut(s) | 530, 640, 730 |
| Eco57I | CTGAAG | 1 cut(s) | 594 |
| EcoRII | CCWGG | 2 cut(s) | 111, 366 |
| EcoT14I | CCWWGG | 2 cut(s) | 485, 720 |
| ErhI | CCWWGG | 2 cut(s) | 485, 720 |
| FaeI | CATG | 1 cut(s) | 760 |
| FaiI | YATR | 6 cut(s) | 119, 189, 200, 444, 645, 758 |
| FaqI | GGGAC | 1 cut(s) | 716 |
| FatI | CATG | 1 cut(s) | 756 |
| Fnu4HI | GCNGC | 3 cut(s) | 146, 243, 744 |
| FokI | GGATG | 2 cut(s) | 284, 502 |
| Fsp4HI | GCNGC | 3 cut(s) | 146, 243, 744 |
| FspBI | CTAG | 1 cut(s) | 362 |
| GlaI | GCGC | 2 cut(s) | 98, 144 |
| GluI | GCNGC | 3 cut(s) | 146, 243, 744 |
| HaeII | RGCGCY | 1 cut(s) | 100 |
| HaeIII | GGCC | 4 cut(s) | 25, 91, 324, 658 |
| HapII | CCGG | 1 cut(s) | 503 |
| HhaI | GCGC | 2 cut(s) | 99, 145 |
| Hin1II | CATG | 1 cut(s) | 760 |
| Hin6I | GCGC | 2 cut(s) | 97, 143 |
| HinP1I | GCGC | 2 cut(s) | 97, 143 |
| HinfI | GANTC | 1 cut(s) | 499 |
| HpaII | CCGG | 1 cut(s) | 503 |
| HphI | GGTGA | 1 cut(s) | 623 |
| Hpy188I | TCNGA | 3 cut(s) | 157, 253, 540 |
| Hpy188III | TCNNGA | 2 cut(s) | 17, 583 |
| HpyAV | CCTTC | 5 cut(s) | 250, 346, 468, 618, 631 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 124, 245, 420, 464, 508 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 681, 757 |
| HpyF3I | CTNAG | 4 cut(s) | 154, 252, 539, 747 |
| Hsp92II | CATG | 1 cut(s) | 760 |
| HspAI | GCGC | 2 cut(s) | 97, 143 |
| Kzo9I | GATC | 2 cut(s) | 522, 686 |
| LmnI | GCTCC | 1 cut(s) | 601 |
| Lsp1109I | GCAGC | 2 cut(s) | 229, 755 |
| MaeI | CTAG | 1 cut(s) | 362 |
| MaeIII | GTNAC | 2 cut(s) | 78, 761 |
| MalI | GATC | 2 cut(s) | 524, 688 |
| MboI | GATC | 2 cut(s) | 522, 686 |
| MboII | GAAGA | 7 cut(s) | 40, 227, 385, 392, 473, 684, 722 |
| MfeI | CAATTG | 1 cut(s) | 735 |
| MluCI | AATT | 7 cut(s) | 12, 266, 300, 435, 515, 578, 735 |
| MnlI | CCTC | 9 cut(s) | 15, 77, 80, 151, 216, 335, 342, 700, 762 |
| MseI | TTAA | 3 cut(s) | 375, 434, 518 |
| MspI | CCGG | 1 cut(s) | 503 |
| MspR9I | CCNGG | 2 cut(s) | 113, 368 |
| MunI | CAATTG | 1 cut(s) | 735 |
| Mva1269I | GAATGC | 1 cut(s) | 172 |
| MvaI | CCWGG | 2 cut(s) | 113, 368 |
| MvnI | CGCG | 1 cut(s) | 619 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 681, 757 |
| NdeII | GATC | 2 cut(s) | 522, 686 |
| NheI | GCTAGC | 1 cut(s) | 361 |
| NlaIII | CATG | 1 cut(s) | 760 |
| NlaIV | GGNNCC | 1 cut(s) | 732 |
| PasI | CCCWGGG | 1 cut(s) | 367 |
| PctI | GAATGC | 1 cut(s) | 172 |
| PfeI | GAWTC | 1 cut(s) | 499 |
| PkrI | GCNGC | 3 cut(s) | 147, 244, 745 |
| Psp6I | CCWGG | 2 cut(s) | 111, 366 |
| PspGI | CCWGG | 2 cut(s) | 111, 366 |
| PspN4I | GGNNCC | 1 cut(s) | 732 |
| PspPI | GGNCC | 4 cut(s) | 89, 530, 640, 730 |
| RsaI | GTAC | 2 cut(s) | 131, 152 |
| RsaNI | GTAC | 2 cut(s) | 130, 151 |
| SaqAI | TTAA | 3 cut(s) | 375, 434, 518 |
| SatI | GCNGC | 3 cut(s) | 146, 243, 744 |
| Sau3AI | GATC | 2 cut(s) | 522, 686 |
| Sau96I | GGNCC | 4 cut(s) | 89, 530, 640, 730 |
| ScrFI | CCNGG | 2 cut(s) | 113, 368 |
| SetI | ASST | 9 cut(s) | 38, 208, 261, 363, 408, 532, 598, 722, 748 |
| SinI | GGWCC | 3 cut(s) | 530, 640, 730 |
| Sse9I | AATT | 7 cut(s) | 12, 266, 300, 435, 515, 578, 735 |
| SsiI | CCGC | 2 cut(s) | 146, 619 |
| SspMI | CTAG | 1 cut(s) | 362 |
| StyD4I | CCNGG | 2 cut(s) | 111, 366 |
| StyI | CCWWGG | 2 cut(s) | 485, 720 |
| TaqI | TCGA | 1 cut(s) | 264 |
| TasI | AATT | 7 cut(s) | 12, 266, 300, 435, 515, 578, 735 |
| TauI | GCSGC | 1 cut(s) | 148 |
| TfiI | GAWTC | 1 cut(s) | 499 |
| Tru1I | TTAA | 3 cut(s) | 375, 434, 518 |
| Tru9I | TTAA | 3 cut(s) | 375, 434, 518 |
| TseI | GCWGC | 2 cut(s) | 242, 743 |
| TspDTI | ATGAA | 3 cut(s) | 41, 179, 512 |
| VpaK11BI | GGWCC | 3 cut(s) | 530, 640, 730 |
| XapI | RAATTY | 2 cut(s) | 12, 578 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 724 |
| XspI | CTAG | 1 cut(s) | 362 |