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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 622 |
| Acc36I | ACCTGC | 1 cut(s) | 622 |
| AccB1I | GGYRCC | 1 cut(s) | 282 |
| AccI | GTMKAC | 1 cut(s) | 855 |
| AciI | CCGC | 1 cut(s) | 158 |
| AcsI | RAATTY | 1 cut(s) | 50 |
| AfaI | GTAC | 3 cut(s) | 297, 484, 645 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 517, 602, 738, 739 |
| AflII | CTTAAG | 1 cut(s) | 274 |
| AgeI | ACCGGT | 1 cut(s) | 451 |
| AgsI | TTSAA | 2 cut(s) | 25, 55 |
| AjnI | CCWGG | 2 cut(s) | 45, 285 |
| AluBI | AGCT | 4 cut(s) | 279, 293, 601, 800 |
| AluI | AGCT | 4 cut(s) | 279, 293, 601, 800 |
| Alw21I | GWGCWC | 3 cut(s) | 111, 415, 756 |
| Alw44I | GTGCAC | 1 cut(s) | 107 |
| AoxI | GGCC | 2 cut(s) | 11, 783 |
| ApaLI | GTGCAC | 1 cut(s) | 107 |
| ApeKI | GCWGC | 1 cut(s) | 800 |
| ApoI | RAATTY | 1 cut(s) | 50 |
| AsiGI | ACCGGT | 1 cut(s) | 451 |
| AspLEI | GCGC | 2 cut(s) | 608, 631 |
| AspS9I | GGNCC | 1 cut(s) | 11 |
| AsuC2I | CCSGG | 2 cut(s) | 596, 787 |
| BaeGI | GKGCMC | 2 cut(s) | 111, 733 |
| BanI | GGYRCC | 1 cut(s) | 282 |
| BanII | GRGCYC | 3 cut(s) | 475, 511, 596 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 643, 675 |
| BauI | CACGAG | 2 cut(s) | 408, 504 |
| Bbv12I | GWGCWC | 3 cut(s) | 111, 415, 756 |
| BbvI | GCAGC | 1 cut(s) | 787 |
| BccI | CCATC | 4 cut(s) | 158, 226, 250, 542 |
| BciT130I | CCWGG | 2 cut(s) | 47, 287 |
| BciVI | GTATCC | 1 cut(s) | 783 |
| BclI | TGATCA | 1 cut(s) | 39 |
| BcnI | CCSGG | 2 cut(s) | 596, 787 |
| BfaI | CTAG | 5 cut(s) | 363, 393, 512, 812, 849 |
| BfoI | RGCGCY | 1 cut(s) | 609 |
| BfrI | CTTAAG | 1 cut(s) | 274 |
| BfuAI | ACCTGC | 1 cut(s) | 622 |
| BfuI | GTATCC | 1 cut(s) | 783 |
| BisI | GCNGC | 2 cut(s) | 159, 801 |
| BlsI | GCNGC | 2 cut(s) | 160, 802 |
| Bme1390I | CCNGG | 4 cut(s) | 47, 287, 596, 787 |
| BmgT120I | GGNCC | 1 cut(s) | 11 |
| BmiI | GGNNCC | 1 cut(s) | 284 |
| BmrFI | CCNGG | 4 cut(s) | 47, 287, 596, 787 |
| BmsI | GCATC | 2 cut(s) | 98, 820 |
| BoxI | GACNNNNGTC | 1 cut(s) | 874 |
| BpmI | CTGGAG | 1 cut(s) | 155 |
| BpuMI | CCSGG | 2 cut(s) | 596, 787 |
| BsaJI | CCNNGG | 2 cut(s) | 14, 286 |
| BsaWI | WCCGGW | 1 cut(s) | 451 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 748, 778 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 517, 602, 738, 739 |
| Bse118I | RCCGGY | 1 cut(s) | 451 |
| BseBI | CCWGG | 2 cut(s) | 47, 287 |
| BseDI | CCNNGG | 2 cut(s) | 14, 286 |
| BseGI | GGATG | 4 cut(s) | 42, 120, 196, 835 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 517, 602, 738, 739 |
| BseMII | CTCAG | 3 cut(s) | 558, 654, 661 |
| BseSI | GKGCMC | 2 cut(s) | 111, 733 |
| BseXI | GCAGC | 1 cut(s) | 787 |
| BseYI | CCCAGC | 1 cut(s) | 170 |
| BshFI | GGCC | 2 cut(s) | 13, 785 |
| BshNI | GGYRCC | 1 cut(s) | 282 |
| BshTI | ACCGGT | 1 cut(s) | 451 |
| BsiHKAI | GWGCWC | 3 cut(s) | 111, 415, 756 |
| BsiSI | CCGG | 3 cut(s) | 452, 596, 786 |
| BslFI | GGGAC | 2 cut(s) | 187, 733 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 517, 602, 738, 739 |
| BsmFI | GGGAC | 2 cut(s) | 187, 733 |
| BsnI | GGCC | 2 cut(s) | 13, 785 |
| Bsp1286I | GDGCHC | 7 cut(s) | 111, 415, 475, 511, 596, 733, 756 |
| Bsp1407I | TGTACA | 1 cut(s) | 295 |
| Bsp143I | GATC | 1 cut(s) | 39 |
| Bsp19I | CCATGG | 1 cut(s) | 14 |
| BspACI | CCGC | 1 cut(s) | 158 |
| BspANI | GGCC | 2 cut(s) | 13, 785 |
| BspCNI | CTCAG | 3 cut(s) | 559, 655, 660 |
| BspLI | GGNNCC | 1 cut(s) | 284 |
| BspMI | ACCTGC | 1 cut(s) | 622 |
| BspT107I | GGYRCC | 1 cut(s) | 282 |
| BspTI | CTTAAG | 1 cut(s) | 274 |
| BsrFI | RCCGGY | 1 cut(s) | 451 |
| BsrGI | TGTACA | 1 cut(s) | 295 |
| BssAI | RCCGGY | 1 cut(s) | 451 |
| BssECI | CCNNGG | 2 cut(s) | 14, 286 |
| BssMI | GATC | 1 cut(s) | 39 |
| BssSI | CACGAG | 2 cut(s) | 408, 504 |
| BssT1I | CCWWGG | 1 cut(s) | 14 |
| Bst2BI | CACGAG | 2 cut(s) | 408, 504 |
| Bst2UI | CCWGG | 2 cut(s) | 47, 287 |
| Bst4CI | ACNGT | 1 cut(s) | 166 |
| Bst6I | CTCTTC | 3 cut(s) | 101, 510, 834 |
| BstAFI | CTTAAG | 1 cut(s) | 274 |
| BstAUI | TGTACA | 1 cut(s) | 295 |
| BstC8I | GCNNGC | 1 cut(s) | 281 |
| BstDEI | CTNAG | 4 cut(s) | 567, 647, 663, 873 |
| BstDSI | CCRYGG | 1 cut(s) | 14 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 515 |
| BstF5I | GGATG | 4 cut(s) | 42, 120, 196, 835 |
| BstH2I | RGCGCY | 1 cut(s) | 609 |
| BstHHI | GCGC | 2 cut(s) | 608, 631 |
| BstKTI | GATC | 1 cut(s) | 42 |
| BstMBI | GATC | 1 cut(s) | 39 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 167, 806 |
| BstNI | CCWGG | 2 cut(s) | 47, 287 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 874 |
| BstSCI | CCNGG | 4 cut(s) | 45, 285, 594, 785 |
| BstSLI | GKGCMC | 2 cut(s) | 111, 733 |
| BstV1I | GCAGC | 1 cut(s) | 787 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 85 |
| BsuI | GTATCC | 1 cut(s) | 783 |
| BsuRI | GGCC | 2 cut(s) | 13, 785 |
| BtgI | CCRYGG | 1 cut(s) | 14 |
| BtsCI | GGATG | 4 cut(s) | 42, 120, 196, 835 |
| BtsI | GCAGTG | 1 cut(s) | 537 |
| BtsIMutI | CAGTG | 3 cut(s) | 352, 537, 756 |
| BveI | ACCTGC | 1 cut(s) | 622 |
| Cac8I | GCNNGC | 1 cut(s) | 281 |
| CfoI | GCGC | 2 cut(s) | 608, 631 |
| Cfr10I | RCCGGY | 1 cut(s) | 451 |
| Cfr13I | GGNCC | 1 cut(s) | 11 |
| Csp6I | GTAC | 3 cut(s) | 296, 483, 644 |
| CspAI | ACCGGT | 1 cut(s) | 451 |
| CviAII | CATG | 3 cut(s) | 15, 29, 238 |
| CviQI | GTAC | 3 cut(s) | 296, 483, 644 |
| DdeI | CTNAG | 4 cut(s) | 567, 647, 663, 873 |
| DpnI | GATC | 1 cut(s) | 41 |
| DpnII | GATC | 1 cut(s) | 39 |
| Eam1104I | CTCTTC | 3 cut(s) | 101, 510, 834 |
| EarI | CTCTTC | 3 cut(s) | 101, 510, 834 |
| Eco130I | CCWWGG | 1 cut(s) | 14 |
| Eco24I | GRGCYC | 3 cut(s) | 475, 511, 596 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 515 |
| EcoRI | GAATTC | 1 cut(s) | 50 |
| EcoRII | CCWGG | 2 cut(s) | 45, 285 |
| EcoT14I | CCWWGG | 1 cut(s) | 14 |
| EcoT38I | GRGCYC | 3 cut(s) | 475, 511, 596 |
| ErhI | CCWWGG | 1 cut(s) | 14 |
| FaeI | CATG | 3 cut(s) | 18, 32, 241 |
| FaiI | YATR | 7 cut(s) | 16, 30, 38, 86, 188, 239, 836 |
| FaqI | GGGAC | 2 cut(s) | 187, 733 |
| FatI | CATG | 3 cut(s) | 14, 28, 237 |
| FbaI | TGATCA | 1 cut(s) | 39 |
| FblI | GTMKAC | 1 cut(s) | 855 |
| Fnu4HI | GCNGC | 2 cut(s) | 159, 801 |
| FokI | GGATG | 4 cut(s) | 29, 107, 203, 842 |
| FriOI | GRGCYC | 3 cut(s) | 475, 511, 596 |
| Fsp4HI | GCNGC | 2 cut(s) | 159, 801 |
| FspBI | CTAG | 5 cut(s) | 363, 393, 512, 812, 849 |
| GlaI | GCGC | 2 cut(s) | 607, 630 |
| GluI | GCNGC | 2 cut(s) | 159, 801 |
| GsaI | CCCAGC | 1 cut(s) | 174 |
| GsuI | CTGGAG | 1 cut(s) | 155 |
| HaeII | RGCGCY | 1 cut(s) | 609 |
| HaeIII | GGCC | 2 cut(s) | 13, 785 |
| HapII | CCGG | 3 cut(s) | 452, 596, 786 |
| HhaI | GCGC | 2 cut(s) | 608, 631 |
| Hin1II | CATG | 3 cut(s) | 18, 32, 241 |
| Hin6I | GCGC | 2 cut(s) | 606, 629 |
| HinP1I | GCGC | 2 cut(s) | 606, 629 |
| HinfI | GANTC | 3 cut(s) | 70, 140, 700 |
| HpaII | CCGG | 3 cut(s) | 452, 596, 786 |
| Hpy166II | GTNNAC | 2 cut(s) | 109, 856 |
| Hpy188I | TCNGA | 7 cut(s) | 75, 223, 336, 477, 568, 576, 664 |
| Hpy188III | TCNNGA | 3 cut(s) | 134, 182, 812 |
| Hpy8I | GTNNAC | 2 cut(s) | 109, 856 |
| HpyAV | CCTTC | 3 cut(s) | 421, 548, 634 |
| HpyCH4III | ACNGT | 1 cut(s) | 166 |
| HpyCH4V | TGCA | 8 cut(s) | 32, 109, 264, 542, 676, 686, 773, 803 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 167, 806 |
| HpyF3I | CTNAG | 4 cut(s) | 567, 647, 663, 873 |
| Hsp92II | CATG | 3 cut(s) | 18, 32, 241 |
| HspAI | GCGC | 2 cut(s) | 606, 629 |
| Ksp22I | TGATCA | 1 cut(s) | 39 |
| Kzo9I | GATC | 1 cut(s) | 39 |
| LmnI | GCTCC | 2 cut(s) | 290, 598 |
| Lsp1109I | GCAGC | 1 cut(s) | 787 |
| LweI | GCATC | 2 cut(s) | 98, 820 |
| MaeI | CTAG | 5 cut(s) | 363, 393, 512, 812, 849 |
| MaeIII | GTNAC | 2 cut(s) | 116, 844 |
| MalI | GATC | 1 cut(s) | 41 |
| MboI | GATC | 1 cut(s) | 39 |
| MboII | GAAGA | 5 cut(s) | 88, 249, 527, 651, 851 |
| MhlI | GDGCHC | 7 cut(s) | 111, 415, 475, 511, 596, 733, 756 |
| MluCI | AATT | 2 cut(s) | 50, 307 |
| MseI | TTAA | 3 cut(s) | 204, 275, 462 |
| MslI | CAYNNNNRTG | 1 cut(s) | 83 |
| MspCI | CTTAAG | 1 cut(s) | 274 |
| MspI | CCGG | 3 cut(s) | 452, 596, 786 |
| MspR9I | CCNGG | 4 cut(s) | 47, 287, 596, 787 |
| MvaI | CCWGG | 2 cut(s) | 47, 287 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 167, 806 |
| NciI | CCSGG | 2 cut(s) | 596, 787 |
| NcoI | CCATGG | 1 cut(s) | 14 |
| NdeII | GATC | 1 cut(s) | 39 |
| NlaIII | CATG | 3 cut(s) | 18, 32, 241 |
| NlaIV | GGNNCC | 1 cut(s) | 284 |
| NmuCI | GTSAC | 1 cut(s) | 844 |
| PaqCI | CACCTGC | 1 cut(s) | 622 |
| PfeI | GAWTC | 3 cut(s) | 70, 140, 700 |
| PfoI | TCCNGGA | 1 cut(s) | 45 |
| PinAI | ACCGGT | 1 cut(s) | 451 |
| PkrI | GCNGC | 2 cut(s) | 160, 802 |
| PshAI | GACNNNNGTC | 1 cut(s) | 874 |
| Psp6I | CCWGG | 2 cut(s) | 45, 285 |
| PspFI | CCCAGC | 1 cut(s) | 170 |
| PspGI | CCWGG | 2 cut(s) | 45, 285 |
| PspN4I | GGNNCC | 1 cut(s) | 284 |
| PspPI | GGNCC | 1 cut(s) | 11 |
| RsaI | GTAC | 3 cut(s) | 297, 484, 645 |
| RsaNI | GTAC | 3 cut(s) | 296, 483, 644 |
| RseI | CAYNNNNRTG | 1 cut(s) | 83 |
| SaqAI | TTAA | 3 cut(s) | 204, 275, 462 |
| SatI | GCNGC | 2 cut(s) | 159, 801 |
| Sau3AI | GATC | 1 cut(s) | 39 |
| Sau96I | GGNCC | 1 cut(s) | 11 |
| ScrFI | CCNGG | 4 cut(s) | 47, 287, 596, 787 |
| SduI | GDGCHC | 7 cut(s) | 111, 415, 475, 511, 596, 733, 756 |
| SfaNI | GCATC | 2 cut(s) | 98, 820 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 83 |
| SmlI | CTYRAG | 1 cut(s) | 274 |
| SmoI | CTYRAG | 1 cut(s) | 274 |
| Sse9I | AATT | 2 cut(s) | 50, 307 |
| SsiI | CCGC | 1 cut(s) | 158 |
| SspMI | CTAG | 5 cut(s) | 363, 393, 512, 812, 849 |
| StyD4I | CCNGG | 4 cut(s) | 45, 285, 594, 785 |
| StyI | CCWWGG | 1 cut(s) | 14 |
| TaaI | ACNGT | 1 cut(s) | 166 |
| TaqI | TCGA | 3 cut(s) | 209, 534, 621 |
| TaqII | GACCGA | 1 cut(s) | 378 |
| TasI | AATT | 2 cut(s) | 50, 307 |
| TatI | WGTACW | 2 cut(s) | 295, 482 |
| TauI | GCSGC | 1 cut(s) | 161 |
| TfiI | GAWTC | 3 cut(s) | 70, 140, 700 |
| Tru1I | TTAA | 3 cut(s) | 204, 275, 462 |
| Tru9I | TTAA | 3 cut(s) | 204, 275, 462 |
| TscAI | CASTG | 3 cut(s) | 352, 544, 763 |
| TseFI | GTSAC | 1 cut(s) | 844 |
| TseI | GCWGC | 1 cut(s) | 800 |
| Tsp45I | GTSAC | 1 cut(s) | 844 |
| TspRI | CASTG | 3 cut(s) | 352, 544, 763 |
| Vha464I | CTTAAG | 1 cut(s) | 274 |
| VneI | GTGCAC | 1 cut(s) | 107 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 515 |
| XapI | RAATTY | 1 cut(s) | 50 |
| XbaI | TCTAGA | 1 cut(s) | 811 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 53 |
| XmiI | GTMKAC | 1 cut(s) | 855 |
| XspI | CTAG | 5 cut(s) | 363, 393, 512, 812, 849 |