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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 646 |
| AccB1I | GGYRCC | 1 cut(s) | 349 |
| AciI | CCGC | 1 cut(s) | 901 |
| AcuI | CTGAAG | 1 cut(s) | 702 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 706 |
| AgsI | TTSAA | 8 cut(s) | 65, 370, 400, 426, 778, 853, 892, 1023 |
| AjnI | CCWGG | 1 cut(s) | 699 |
| AluBI | AGCT | 5 cut(s) | 11, 485, 583, 931, 973 |
| AluI | AGCT | 5 cut(s) | 11, 485, 583, 931, 973 |
| Alw26I | GTCTC | 4 cut(s) | 268, 384, 415, 970 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1067 |
| ApeKI | GCWGC | 5 cut(s) | 283, 482, 942, 1058, 1067 |
| AseI | ATTAAT | 1 cut(s) | 248 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 628 |
| AspS9I | GGNCC | 1 cut(s) | 807 |
| AsuHPI | GGTGA | 5 cut(s) | 329, 395, 577, 620, 904 |
| AsuII | TTCGAA | 1 cut(s) | 874 |
| AvaII | GGWCC | 1 cut(s) | 807 |
| BanI | GGYRCC | 1 cut(s) | 349 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 560, 592 |
| BbvI | GCAGC | 5 cut(s) | 270, 494, 954, 1054, 1070 |
| BccI | CCATC | 1 cut(s) | 261 |
| BciT130I | CCWGG | 1 cut(s) | 701 |
| BcoDI | GTCTC | 4 cut(s) | 268, 384, 415, 970 |
| BfuAI | ACCTGC | 1 cut(s) | 646 |
| BisI | GCNGC | 5 cut(s) | 284, 483, 943, 1059, 1068 |
| BlsI | GCNGC | 5 cut(s) | 285, 484, 944, 1060, 1069 |
| Bme1390I | CCNGG | 1 cut(s) | 701 |
| Bme18I | GGWCC | 1 cut(s) | 807 |
| BmgT120I | GGNCC | 1 cut(s) | 807 |
| BmiI | GGNNCC | 2 cut(s) | 351, 808 |
| BmrFI | CCNGG | 1 cut(s) | 701 |
| BmsI | GCATC | 2 cut(s) | 331, 1054 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 754, 786 |
| BpmI | CTGGAG | 1 cut(s) | 163 |
| Bpu10I | CCTNAGC | 1 cut(s) | 750 |
| Bpu14I | TTCGAA | 1 cut(s) | 874 |
| BpuEI | CTTGAG | 1 cut(s) | 911 |
| BsaJI | CCNNGG | 1 cut(s) | 700 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 295, 325 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 706 |
| Bse1I | ACTGG | 1 cut(s) | 174 |
| Bse3DI | GCAATG | 1 cut(s) | 500 |
| BseBI | CCWGG | 1 cut(s) | 701 |
| BseDI | CCNNGG | 1 cut(s) | 700 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 706 |
| BseMI | GCAATG | 1 cut(s) | 500 |
| BseMII | CTCAG | 2 cut(s) | 602, 1015 |
| BseNI | ACTGG | 1 cut(s) | 174 |
| BseRI | GAGGAG | 3 cut(s) | 372, 722, 725 |
| BseXI | GCAGC | 5 cut(s) | 270, 494, 954, 1054, 1070 |
| BsgI | GTGCAG | 2 cut(s) | 804, 1053 |
| BshNI | GGYRCC | 1 cut(s) | 349 |
| BsiSI | CCGG | 1 cut(s) | 161 |
| BslFI | GGGAC | 1 cut(s) | 820 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 706 |
| BsmAI | GTCTC | 4 cut(s) | 268, 384, 415, 970 |
| BsmBI | CGTCTC | 1 cut(s) | 970 |
| BsmFI | GGGAC | 1 cut(s) | 820 |
| Bsp119I | TTCGAA | 1 cut(s) | 874 |
| Bsp143I | GATC | 5 cut(s) | 236, 257, 330, 372, 1004 |
| BspACI | CCGC | 1 cut(s) | 901 |
| BspCNI | CTCAG | 2 cut(s) | 601, 1014 |
| BspLI | GGNNCC | 2 cut(s) | 351, 808 |
| BspMI | ACCTGC | 1 cut(s) | 646 |
| BspT104I | TTCGAA | 1 cut(s) | 874 |
| BspT107I | GGYRCC | 1 cut(s) | 349 |
| BsrDI | GCAATG | 1 cut(s) | 500 |
| BsrI | ACTGG | 1 cut(s) | 174 |
| BssECI | CCNNGG | 1 cut(s) | 700 |
| BssMI | GATC | 5 cut(s) | 236, 257, 330, 372, 1004 |
| Bst2UI | CCWGG | 1 cut(s) | 701 |
| Bst4CI | ACNGT | 1 cut(s) | 565 |
| Bst6I | CTCTTC | 2 cut(s) | 418, 563 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1064, 1067 |
| BstBI | TTCGAA | 1 cut(s) | 874 |
| BstC8I | GCNNGC | 4 cut(s) | 47, 129, 585, 975 |
| BstDEI | CTNAG | 4 cut(s) | 588, 750, 1001, 1049 |
| BstEII | GGTNACC | 1 cut(s) | 575 |
| BstKTI | GATC | 5 cut(s) | 239, 260, 333, 375, 1007 |
| BstMAI | GTCTC | 4 cut(s) | 268, 384, 415, 970 |
| BstMBI | GATC | 5 cut(s) | 236, 257, 330, 372, 1004 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 128, 133, 157, 1064, 1067 |
| BstNI | CCWGG | 1 cut(s) | 701 |
| BstNSI | RCATGY | 1 cut(s) | 728 |
| BstPI | GGTNACC | 1 cut(s) | 575 |
| BstSCI | CCNGG | 1 cut(s) | 699 |
| BstV1I | GCAGC | 5 cut(s) | 270, 494, 954, 1054, 1070 |
| BtsI | GCAGTG | 2 cut(s) | 143, 792 |
| BtsIMutI | CAGTG | 2 cut(s) | 143, 792 |
| BveI | ACCTGC | 1 cut(s) | 646 |
| Cac8I | GCNNGC | 4 cut(s) | 47, 129, 585, 975 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1067 |
| Cfr13I | GGNCC | 1 cut(s) | 807 |
| CviAII | CATG | 3 cut(s) | 338, 376, 725 |
| CviJI | RGCY | 7 cut(s) | 11, 485, 583, 749, 931, 973, 1048 |
| CviKI_1 | RGCY | 7 cut(s) | 11, 485, 583, 749, 931, 973, 1048 |
| DdeI | CTNAG | 4 cut(s) | 588, 750, 1001, 1049 |
| DpnI | GATC | 5 cut(s) | 238, 259, 332, 374, 1006 |
| DpnII | GATC | 5 cut(s) | 236, 257, 330, 372, 1004 |
| Eam1104I | CTCTTC | 2 cut(s) | 418, 563 |
| EarI | CTCTTC | 2 cut(s) | 418, 563 |
| Eco47I | GGWCC | 1 cut(s) | 807 |
| Eco57I | CTGAAG | 1 cut(s) | 702 |
| Eco91I | GGTNACC | 1 cut(s) | 575 |
| EcoO109I | RGGNCCY | 1 cut(s) | 807 |
| EcoO65I | GGTNACC | 1 cut(s) | 575 |
| EcoRII | CCWGG | 1 cut(s) | 699 |
| Esp3I | CGTCTC | 1 cut(s) | 970 |
| FaeI | CATG | 3 cut(s) | 341, 379, 728 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1032, 1064 |
| FaqI | GGGAC | 1 cut(s) | 820 |
| FatI | CATG | 3 cut(s) | 337, 375, 724 |
| Fnu4HI | GCNGC | 5 cut(s) | 284, 483, 943, 1059, 1068 |
| Fsp4HI | GCNGC | 5 cut(s) | 284, 483, 943, 1059, 1068 |
| GluI | GCNGC | 5 cut(s) | 284, 483, 943, 1059, 1068 |
| GsuI | CTGGAG | 1 cut(s) | 163 |
| HapII | CCGG | 1 cut(s) | 161 |
| Hin1II | CATG | 3 cut(s) | 341, 379, 728 |
| HindIII | AAGCTT | 1 cut(s) | 971 |
| HinfI | GANTC | 3 cut(s) | 320, 458, 470 |
| HpaII | CCGG | 1 cut(s) | 161 |
| HphI | GGTGA | 5 cut(s) | 329, 395, 577, 620, 904 |
| Hpy166II | GTNNAC | 2 cut(s) | 643, 797 |
| Hpy188I | TCNGA | 4 cut(s) | 111, 457, 475, 1004 |
| Hpy188III | TCNNGA | 3 cut(s) | 370, 617, 778 |
| Hpy8I | GTNNAC | 2 cut(s) | 643, 797 |
| HpyAV | CCTTC | 2 cut(s) | 677, 820 |
| HpyCH4III | ACNGT | 1 cut(s) | 565 |
| HpyCH4IV | ACGT | 1 cut(s) | 963 |
| HpyCH4V | TGCA | 6 cut(s) | 192, 689, 785, 833, 942, 1070 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 128, 133, 157, 1064, 1067 |
| HpyF3I | CTNAG | 4 cut(s) | 588, 750, 1001, 1049 |
| HpySE526I | ACGT | 1 cut(s) | 963 |
| Hsp92II | CATG | 3 cut(s) | 341, 379, 728 |
| Kzo9I | GATC | 5 cut(s) | 236, 257, 330, 372, 1004 |
| LmnI | GCTCC | 2 cut(s) | 517, 957 |
| Lsp1109I | GCAGC | 5 cut(s) | 270, 494, 954, 1054, 1070 |
| LweI | GCATC | 2 cut(s) | 331, 1054 |
| MaeII | ACGT | 1 cut(s) | 963 |
| MaeIII | GTNAC | 3 cut(s) | 37, 317, 575 |
| MalI | GATC | 5 cut(s) | 238, 259, 332, 374, 1006 |
| MboI | GATC | 5 cut(s) | 236, 257, 330, 372, 1004 |
| MboII | GAAGA | 5 cut(s) | 201, 405, 580, 621, 1052 |
| MfeI | CAATTG | 1 cut(s) | 278 |
| MluCI | AATT | 7 cut(s) | 82, 249, 278, 634, 668, 857, 949 |
| MlyI | GAGTC | 2 cut(s) | 314, 479 |
| MmeI | TCCRAC | 1 cut(s) | 453 |
| MroXI | GAANNNNTTC | 1 cut(s) | 628 |
| MseI | TTAA | 2 cut(s) | 248, 671 |
| MspI | CCGG | 1 cut(s) | 161 |
| MspR9I | CCNGG | 1 cut(s) | 701 |
| MunI | CAATTG | 1 cut(s) | 278 |
| MvaI | CCWGG | 1 cut(s) | 701 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 128, 133, 157, 1064, 1067 |
| NdeII | GATC | 5 cut(s) | 236, 257, 330, 372, 1004 |
| NlaIII | CATG | 3 cut(s) | 341, 379, 728 |
| NlaIV | GGNNCC | 2 cut(s) | 351, 808 |
| NmuCI | GTSAC | 2 cut(s) | 37, 317 |
| NspI | RCATGY | 1 cut(s) | 728 |
| NspV | TTCGAA | 1 cut(s) | 874 |
| PdmI | GAANNNNTTC | 1 cut(s) | 628 |
| PfeI | GAWTC | 1 cut(s) | 458 |
| PkrI | GCNGC | 5 cut(s) | 285, 484, 944, 1060, 1069 |
| PleI | GAGTC | 2 cut(s) | 314, 478 |
| PpsI | GAGTC | 2 cut(s) | 314, 478 |
| PpuMI | RGGWCCY | 1 cut(s) | 807 |
| PshBI | ATTAAT | 1 cut(s) | 248 |
| Psp5II | RGGWCCY | 1 cut(s) | 807 |
| Psp6I | CCWGG | 1 cut(s) | 699 |
| PspEI | GGTNACC | 1 cut(s) | 575 |
| PspGI | CCWGG | 1 cut(s) | 699 |
| PspN4I | GGNNCC | 2 cut(s) | 351, 808 |
| PspPI | GGNCC | 1 cut(s) | 807 |
| PspPPI | RGGWCCY | 1 cut(s) | 807 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1067 |
| SaqAI | TTAA | 2 cut(s) | 248, 671 |
| SatI | GCNGC | 5 cut(s) | 284, 483, 943, 1059, 1068 |
| Sau3AI | GATC | 5 cut(s) | 236, 257, 330, 372, 1004 |
| Sau96I | GGNCC | 1 cut(s) | 807 |
| SchI | GAGTC | 2 cut(s) | 314, 479 |
| ScrFI | CCNGG | 1 cut(s) | 701 |
| SfaNI | GCATC | 2 cut(s) | 331, 1054 |
| SfuI | TTCGAA | 1 cut(s) | 874 |
| SinI | GGWCC | 1 cut(s) | 807 |
| SmlI | CTYRAG | 1 cut(s) | 926 |
| SmoI | CTYRAG | 1 cut(s) | 926 |
| Sse9I | AATT | 7 cut(s) | 82, 249, 278, 634, 668, 857, 949 |
| SsiI | CCGC | 1 cut(s) | 901 |
| SspI | AATATT | 1 cut(s) | 1027 |
| StyD4I | CCNGG | 1 cut(s) | 699 |
| TaaI | ACNGT | 1 cut(s) | 565 |
| TaiI | ACGT | 1 cut(s) | 966 |
| TaqI | TCGA | 1 cut(s) | 874 |
| TasI | AATT | 7 cut(s) | 82, 249, 278, 634, 668, 857, 949 |
| TfiI | GAWTC | 1 cut(s) | 458 |
| Tru1I | TTAA | 2 cut(s) | 248, 671 |
| Tru9I | TTAA | 2 cut(s) | 248, 671 |
| TscAI | CASTG | 2 cut(s) | 143, 792 |
| TseFI | GTSAC | 2 cut(s) | 37, 317 |
| TseI | GCWGC | 5 cut(s) | 283, 482, 942, 1058, 1067 |
| Tsp45I | GTSAC | 2 cut(s) | 37, 317 |
| TspDTI | ATGAA | 3 cut(s) | 234, 510, 870 |
| TspRI | CASTG | 2 cut(s) | 143, 792 |
| VpaK11BI | GGWCC | 1 cut(s) | 807 |
| VspI | ATTAAT | 1 cut(s) | 248 |
| XceI | RCATGY | 1 cut(s) | 728 |
| XmnI | GAANNNNTTC | 1 cut(s) | 628 |