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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 633 |
| AccII | CGCG | 1 cut(s) | 35 |
| AciI | CCGC | 6 cut(s) | 24, 35, 53, 107, 503, 559 |
| AclWI | GGATC | 2 cut(s) | 481, 853 |
| AcsI | RAATTY | 5 cut(s) | 204, 307, 701, 782, 1023 |
| AcuI | CTGAAG | 1 cut(s) | 978 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 842, 910 |
| AgsI | TTSAA | 5 cut(s) | 85, 250, 488, 812, 936 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 640 |
| AjiI | CACGTC | 1 cut(s) | 637 |
| AjnI | CCWGG | 5 cut(s) | 271, 378, 442, 817, 982 |
| AluBI | AGCT | 6 cut(s) | 30, 221, 565, 735, 815, 871 |
| AluI | AGCT | 6 cut(s) | 30, 221, 565, 735, 815, 871 |
| Alw26I | GTCTC | 3 cut(s) | 404, 716, 809 |
| AlwI | GGATC | 2 cut(s) | 481, 853 |
| AoxI | GGCC | 5 cut(s) | 490, 593, 665, 901, 905 |
| ApeKI | GCWGC | 1 cut(s) | 868 |
| ApoI | RAATTY | 5 cut(s) | 204, 307, 701, 782, 1023 |
| AsuHPI | GGTGA | 4 cut(s) | 37, 292, 666, 731 |
| AsuNHI | GCTAGC | 1 cut(s) | 731 |
| AxyI | CCTNAGG | 2 cut(s) | 590, 837 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 85, 118 |
| BanII | GRGCYC | 2 cut(s) | 59, 917 |
| BbvCI | CCTCAGC | 1 cut(s) | 600 |
| BbvI | GCAGC | 1 cut(s) | 880 |
| BccI | CCATC | 3 cut(s) | 243, 342, 710 |
| BceAI | ACGGC | 1 cut(s) | 103 |
| BciT130I | CCWGG | 5 cut(s) | 273, 380, 444, 819, 984 |
| BciVI | GTATCC | 1 cut(s) | 113 |
| BclI | TGATCA | 1 cut(s) | 175 |
| BcoDI | GTCTC | 3 cut(s) | 404, 716, 809 |
| BfaI | CTAG | 6 cut(s) | 50, 116, 617, 732, 996, 1002 |
| BfuI | GTATCC | 1 cut(s) | 113 |
| BisI | GCNGC | 2 cut(s) | 36, 869 |
| BlpI | GCTNAGC | 1 cut(s) | 968 |
| BlsI | GCNGC | 2 cut(s) | 37, 870 |
| Bme1390I | CCNGG | 5 cut(s) | 273, 380, 444, 819, 984 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 640 |
| BmgBI | CACGTC | 1 cut(s) | 637 |
| BmiI | GGNNCC | 1 cut(s) | 91 |
| BmrFI | CCNGG | 5 cut(s) | 273, 380, 444, 819, 984 |
| BmsI | GCATC | 3 cut(s) | 47, 364, 680 |
| BmtI | GCTAGC | 1 cut(s) | 735 |
| BpmI | CTGGAG | 3 cut(s) | 294, 498, 801 |
| Bpu10I | CCTNAGC | 1 cut(s) | 600 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 968 |
| BpuEI | CTTGAG | 1 cut(s) | 245 |
| BsaBI | GATNNNNATC | 2 cut(s) | 174, 333 |
| BsaI | GGTCTC | 1 cut(s) | 809 |
| BsaJI | CCNNGG | 2 cut(s) | 378, 982 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 842, 910 |
| Bse118I | RCCGGY | 1 cut(s) | 903 |
| Bse1I | ACTGG | 1 cut(s) | 515 |
| Bse21I | CCTNAGG | 2 cut(s) | 590, 837 |
| Bse3DI | GCAATG | 1 cut(s) | 863 |
| Bse8I | GATNNNNATC | 2 cut(s) | 174, 333 |
| BseBI | CCWGG | 5 cut(s) | 273, 380, 444, 819, 984 |
| BseDI | CCNNGG | 2 cut(s) | 378, 982 |
| BseGI | GGATG | 2 cut(s) | 235, 431 |
| BseJI | GATNNNNATC | 2 cut(s) | 174, 333 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 842, 910 |
| BseMI | GCAATG | 1 cut(s) | 863 |
| BseMII | CTCAG | 1 cut(s) | 591 |
| BseNI | ACTGG | 1 cut(s) | 515 |
| BseXI | GCAGC | 1 cut(s) | 880 |
| Bsh1236I | CGCG | 1 cut(s) | 35 |
| Bsh1285I | CGRYCG | 1 cut(s) | 407 |
| BshFI | GGCC | 5 cut(s) | 492, 595, 667, 903, 907 |
| BsiEI | CGRYCG | 1 cut(s) | 407 |
| BsiSI | CCGG | 1 cut(s) | 904 |
| BslFI | GGGAC | 1 cut(s) | 670 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 842, 910 |
| BsmAI | GTCTC | 3 cut(s) | 404, 716, 809 |
| BsmFI | GGGAC | 1 cut(s) | 670 |
| BsnI | GGCC | 5 cut(s) | 492, 595, 667, 903, 907 |
| Bso31I | GGTCTC | 1 cut(s) | 809 |
| Bsp1286I | GDGCHC | 2 cut(s) | 59, 917 |
| Bsp143I | GATC | 6 cut(s) | 175, 264, 404, 454, 473, 845 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 968 |
| BspACI | CCGC | 6 cut(s) | 24, 35, 53, 107, 503, 559 |
| BspANI | GGCC | 5 cut(s) | 492, 595, 667, 903, 907 |
| BspCNI | CTCAG | 1 cut(s) | 592 |
| BspFNI | CGCG | 1 cut(s) | 35 |
| BspHI | TCATGA | 2 cut(s) | 135, 346 |
| BspLI | GGNNCC | 1 cut(s) | 91 |
| BspOI | GCTAGC | 1 cut(s) | 735 |
| BspPI | GGATC | 2 cut(s) | 481, 853 |
| BspTNI | GGTCTC | 1 cut(s) | 809 |
| BsrDI | GCAATG | 1 cut(s) | 863 |
| BsrFI | RCCGGY | 1 cut(s) | 903 |
| BsrI | ACTGG | 1 cut(s) | 515 |
| BssAI | RCCGGY | 1 cut(s) | 903 |
| BssECI | CCNNGG | 2 cut(s) | 378, 982 |
| BssMI | GATC | 6 cut(s) | 175, 264, 404, 454, 473, 845 |
| Bst2UI | CCWGG | 5 cut(s) | 273, 380, 444, 819, 984 |
| Bst4CI | ACNGT | 3 cut(s) | 186, 370, 652 |
| Bst6I | CTCTTC | 3 cut(s) | 114, 937, 954 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 330, 978 |
| BstC8I | GCNNGC | 9 cut(s) | 28, 55, 494, 563, 597, 669, 733, 905, 974 |
| BstDEI | CTNAG | 8 cut(s) | 590, 600, 622, 750, 829, 837, 855, 968 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 840 |
| BstF5I | GGATG | 2 cut(s) | 235, 431 |
| BstFNI | CGCG | 1 cut(s) | 35 |
| BstKTI | GATC | 6 cut(s) | 178, 267, 407, 457, 476, 848 |
| BstMAI | GTCTC | 3 cut(s) | 404, 716, 809 |
| BstMBI | GATC | 6 cut(s) | 175, 264, 404, 454, 473, 845 |
| BstMCI | CGRYCG | 1 cut(s) | 407 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 32, 152, 330, 502, 562, 973, 978 |
| BstNI | CCWGG | 5 cut(s) | 273, 380, 444, 819, 984 |
| BstNSI | RCATGY | 1 cut(s) | 976 |
| BstSCI | CCNGG | 5 cut(s) | 271, 378, 442, 817, 982 |
| BstUI | CGCG | 1 cut(s) | 35 |
| BstV1I | GCAGC | 1 cut(s) | 880 |
| Bsu36I | CCTNAGG | 2 cut(s) | 590, 837 |
| BsuI | GTATCC | 1 cut(s) | 113 |
| BsuRI | GGCC | 5 cut(s) | 492, 595, 667, 903, 907 |
| BtrI | CACGTC | 1 cut(s) | 637 |
| BtsCI | GGATG | 2 cut(s) | 235, 431 |
| Cac8I | GCNNGC | 9 cut(s) | 28, 55, 494, 563, 597, 669, 733, 905, 974 |
| CciI | TCATGA | 2 cut(s) | 135, 346 |
| Cfr10I | RCCGGY | 1 cut(s) | 903 |
| CviAII | CATG | 6 cut(s) | 136, 215, 224, 314, 347, 973 |
| DdeI | CTNAG | 8 cut(s) | 590, 600, 622, 750, 829, 837, 855, 968 |
| DpnI | GATC | 6 cut(s) | 177, 266, 406, 456, 475, 847 |
| DpnII | GATC | 6 cut(s) | 175, 264, 404, 454, 473, 845 |
| DriI | GACNNNNNGTC | 1 cut(s) | 640 |
| Eam1104I | CTCTTC | 3 cut(s) | 114, 937, 954 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 640 |
| EarI | CTCTTC | 3 cut(s) | 114, 937, 954 |
| Eco147I | AGGCCT | 3 cut(s) | 492, 595, 667 |
| Eco24I | GRGCYC | 2 cut(s) | 59, 917 |
| Eco31I | GGTCTC | 1 cut(s) | 809 |
| Eco57I | CTGAAG | 1 cut(s) | 978 |
| Eco81I | CCTNAGG | 2 cut(s) | 590, 837 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 840 |
| EcoRII | CCWGG | 5 cut(s) | 271, 378, 442, 817, 982 |
| EcoT38I | GRGCYC | 2 cut(s) | 59, 917 |
| FaeI | CATG | 6 cut(s) | 139, 218, 227, 317, 350, 976 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 951, 983 |
| FaqI | GGGAC | 1 cut(s) | 670 |
| FatI | CATG | 6 cut(s) | 135, 214, 223, 313, 346, 972 |
| FauI | CCCGC | 2 cut(s) | 46, 114 |
| FbaI | TGATCA | 1 cut(s) | 175 |
| FblI | GTMKAC | 1 cut(s) | 633 |
| Fnu4HI | GCNGC | 2 cut(s) | 36, 869 |
| FokI | GGATG | 2 cut(s) | 222, 418 |
| FriOI | GRGCYC | 2 cut(s) | 59, 917 |
| FseI | GGCCGGCC | 1 cut(s) | 907 |
| Fsp4HI | GCNGC | 2 cut(s) | 36, 869 |
| FspBI | CTAG | 6 cut(s) | 50, 116, 617, 732, 996, 1002 |
| GluI | GCNGC | 2 cut(s) | 36, 869 |
| GsuI | CTGGAG | 3 cut(s) | 294, 498, 801 |
| HaeIII | GGCC | 5 cut(s) | 492, 595, 667, 903, 907 |
| HapII | CCGG | 1 cut(s) | 904 |
| Hin1II | CATG | 6 cut(s) | 139, 218, 227, 317, 350, 976 |
| HincII | GTYRAC | 1 cut(s) | 634 |
| HindII | GTYRAC | 1 cut(s) | 634 |
| HindIII | AAGCTT | 2 cut(s) | 28, 563 |
| HinfI | GANTC | 4 cut(s) | 199, 256, 641, 860 |
| HpaII | CCGG | 1 cut(s) | 904 |
| HphI | GGTGA | 4 cut(s) | 37, 292, 666, 731 |
| Hpy166II | GTNNAC | 1 cut(s) | 634 |
| Hpy188I | TCNGA | 5 cut(s) | 94, 409, 454, 482, 549 |
| Hpy188III | TCNNGA | 6 cut(s) | 136, 247, 262, 347, 466, 767 |
| Hpy8I | GTNNAC | 1 cut(s) | 634 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 638 |
| HpyAV | CCTTC | 2 cut(s) | 599, 836 |
| HpyCH4III | ACNGT | 3 cut(s) | 186, 370, 652 |
| HpyCH4IV | ACGT | 4 cut(s) | 18, 357, 636, 683 |
| HpyCH4V | TGCA | 8 cut(s) | 313, 324, 388, 496, 577, 671, 868, 953 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 32, 152, 330, 502, 562, 973, 978 |
| HpyF3I | CTNAG | 8 cut(s) | 590, 600, 622, 750, 829, 837, 855, 968 |
| HpySE526I | ACGT | 4 cut(s) | 18, 357, 636, 683 |
| Hsp92II | CATG | 6 cut(s) | 139, 218, 227, 317, 350, 976 |
| KroI | GCCGGC | 1 cut(s) | 903 |
| KroNI | GCCGGC | 1 cut(s) | 905 |
| Ksp22I | TGATCA | 1 cut(s) | 175 |
| Kzo9I | GATC | 6 cut(s) | 175, 264, 404, 454, 473, 845 |
| LmnI | GCTCC | 2 cut(s) | 95, 820 |
| Lsp1109I | GCAGC | 1 cut(s) | 880 |
| LweI | GCATC | 3 cut(s) | 47, 364, 680 |
| MaeI | CTAG | 6 cut(s) | 50, 116, 617, 732, 996, 1002 |
| MaeII | ACGT | 4 cut(s) | 18, 357, 636, 683 |
| MaeIII | GTNAC | 2 cut(s) | 19, 524 |
| MalI | GATC | 6 cut(s) | 177, 266, 406, 456, 475, 847 |
| MboI | GATC | 6 cut(s) | 175, 264, 404, 454, 473, 845 |
| MboII | GAAGA | 7 cut(s) | 131, 329, 449, 904, 924, 958, 971 |
| MhlI | GDGCHC | 2 cut(s) | 59, 917 |
| MluCI | AATT | 5 cut(s) | 204, 307, 701, 782, 1023 |
| MlyI | GAGTC | 2 cut(s) | 250, 650 |
| MmeI | TCCRAC | 1 cut(s) | 117 |
| MnlI | CCTC | 7 cut(s) | 522, 595, 815, 893, 918, 955, 1002 |
| MroNI | GCCGGC | 1 cut(s) | 903 |
| MseI | TTAA | 2 cut(s) | 711, 1008 |
| MspI | CCGG | 1 cut(s) | 904 |
| MspR9I | CCNGG | 5 cut(s) | 273, 380, 444, 819, 984 |
| MvaI | CCWGG | 5 cut(s) | 273, 380, 444, 819, 984 |
| MvnI | CGCG | 1 cut(s) | 35 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 32, 152, 330, 502, 562, 973, 978 |
| NaeI | GCCGGC | 1 cut(s) | 905 |
| NdeII | GATC | 6 cut(s) | 175, 264, 404, 454, 473, 845 |
| NgoMIV | GCCGGC | 1 cut(s) | 903 |
| NheI | GCTAGC | 1 cut(s) | 731 |
| NlaIII | CATG | 6 cut(s) | 139, 218, 227, 317, 350, 976 |
| NlaIV | GGNNCC | 1 cut(s) | 91 |
| NspI | RCATGY | 1 cut(s) | 976 |
| PaeI | GCATGC | 1 cut(s) | 976 |
| PagI | TCATGA | 2 cut(s) | 135, 346 |
| PceI | AGGCCT | 3 cut(s) | 492, 595, 667 |
| PdiI | GCCGGC | 1 cut(s) | 905 |
| PfeI | GAWTC | 2 cut(s) | 199, 860 |
| PfoI | TCCNGGA | 2 cut(s) | 271, 817 |
| PkrI | GCNGC | 2 cut(s) | 37, 870 |
| Ple19I | CGATCG | 1 cut(s) | 407 |
| PleI | GAGTC | 2 cut(s) | 250, 649 |
| PpsI | GAGTC | 2 cut(s) | 250, 649 |
| Psp6I | CCWGG | 5 cut(s) | 271, 378, 442, 817, 982 |
| PspGI | CCWGG | 5 cut(s) | 271, 378, 442, 817, 982 |
| PspN4I | GGNNCC | 1 cut(s) | 91 |
| PvuI | CGATCG | 1 cut(s) | 407 |
| RigI | GGCCGGCC | 1 cut(s) | 907 |
| SalI | GTCGAC | 1 cut(s) | 632 |
| SaqAI | TTAA | 2 cut(s) | 711, 1008 |
| SatI | GCNGC | 2 cut(s) | 36, 869 |
| Sau3AI | GATC | 6 cut(s) | 175, 264, 404, 454, 473, 845 |
| SchI | GAGTC | 2 cut(s) | 250, 650 |
| ScrFI | CCNGG | 5 cut(s) | 273, 380, 444, 819, 984 |
| SduI | GDGCHC | 2 cut(s) | 59, 917 |
| SfaNI | GCATC | 3 cut(s) | 47, 364, 680 |
| SmlI | CTYRAG | 1 cut(s) | 260 |
| SmoI | CTYRAG | 1 cut(s) | 260 |
| SphI | GCATGC | 1 cut(s) | 976 |
| Sse9I | AATT | 5 cut(s) | 204, 307, 701, 782, 1023 |
| SseBI | AGGCCT | 3 cut(s) | 492, 595, 667 |
| SsiI | CCGC | 6 cut(s) | 24, 35, 53, 107, 503, 559 |
| SspMI | CTAG | 6 cut(s) | 50, 116, 617, 732, 996, 1002 |
| StuI | AGGCCT | 3 cut(s) | 492, 595, 667 |
| StyD4I | CCNGG | 5 cut(s) | 271, 378, 442, 817, 982 |
| TaaI | ACNGT | 3 cut(s) | 186, 370, 652 |
| TaiI | ACGT | 4 cut(s) | 21, 360, 639, 686 |
| TaqI | TCGA | 2 cut(s) | 633, 917 |
| TasI | AATT | 5 cut(s) | 204, 307, 701, 782, 1023 |
| TauI | GCSGC | 1 cut(s) | 38 |
| TfiI | GAWTC | 2 cut(s) | 199, 860 |
| Tru1I | TTAA | 2 cut(s) | 711, 1008 |
| Tru9I | TTAA | 2 cut(s) | 711, 1008 |
| TseI | GCWGC | 1 cut(s) | 868 |
| TspDTI | ATGAA | 5 cut(s) | 152, 203, 318, 335, 363 |
| TspGWI | ACGGA | 1 cut(s) | 268 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 840 |
| XapI | RAATTY | 5 cut(s) | 204, 307, 701, 782, 1023 |
| XceI | RCATGY | 1 cut(s) | 976 |
| XmiI | GTMKAC | 1 cut(s) | 633 |
| XspI | CTAG | 6 cut(s) | 50, 116, 617, 732, 996, 1002 |