ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 378 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 598 |
| AccII | CGCG | 1 cut(s) | 679 |
| AciI | CCGC | 3 cut(s) | 134, 149, 452 |
| AclI | AACGTT | 2 cut(s) | 438, 632 |
| AclWI | GGATC | 2 cut(s) | 97, 341 |
| AcoI | YGGCCR | 1 cut(s) | 126 |
| AcsI | RAATTY | 4 cut(s) | 857, 889, 932, 944 |
| AfaI | GTAC | 1 cut(s) | 927 |
| AfeI | AGCGCT | 1 cut(s) | 411 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 598, 1004 |
| AflII | CTTAAG | 1 cut(s) | 745 |
| AgeI | ACCGGT | 1 cut(s) | 313 |
| AgsI | TTSAA | 7 cut(s) | 85, 218, 304, 791, 868, 922, 974 |
| AluBI | AGCT | 4 cut(s) | 30, 721, 977, 1032 |
| AluI | AGCT | 4 cut(s) | 30, 721, 977, 1032 |
| Alw26I | GTCTC | 4 cut(s) | 91, 560, 872, 971 |
| AlwI | GGATC | 2 cut(s) | 97, 341 |
| Aor51HI | AGCGCT | 1 cut(s) | 411 |
| AoxI | GGCC | 3 cut(s) | 126, 337, 817 |
| ApeKI | GCWGC | 3 cut(s) | 554, 884, 1029 |
| ApoI | RAATTY | 4 cut(s) | 857, 889, 932, 944 |
| AsiGI | ACCGGT | 1 cut(s) | 313 |
| AspA2I | CCTAGG | 1 cut(s) | 961 |
| AspLEI | GCGC | 3 cut(s) | 412, 679, 681 |
| AspS9I | GGNCC | 2 cut(s) | 781, 817 |
| AsuHPI | GGTGA | 2 cut(s) | 37, 887 |
| AvaII | GGWCC | 1 cut(s) | 781 |
| AvrII | CCTAGG | 1 cut(s) | 961 |
| AxyI | CCTNAGG | 1 cut(s) | 999 |
| BalI | TGGCCA | 1 cut(s) | 128 |
| BbsI | GAAGAC | 1 cut(s) | 747 |
| BbvI | GCAGC | 2 cut(s) | 541, 896 |
| BccI | CCATC | 3 cut(s) | 194, 329, 498 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 695, 729 |
| BciVI | GTATCC | 2 cut(s) | 236, 410 |
| BclI | TGATCA | 1 cut(s) | 472 |
| BcoDI | GTCTC | 4 cut(s) | 91, 560, 872, 971 |
| BfaI | CTAG | 3 cut(s) | 341, 413, 962 |
| BfmI | CTRYAG | 1 cut(s) | 882 |
| BfoI | RGCGCY | 1 cut(s) | 413 |
| BfrI | CTTAAG | 1 cut(s) | 745 |
| BfuAI | ACCTGC | 1 cut(s) | 378 |
| BfuI | GTATCC | 2 cut(s) | 236, 410 |
| BglII | AGATCT | 2 cut(s) | 163, 578 |
| BisI | GCNGC | 3 cut(s) | 555, 885, 1030 |
| BlnI | CCTAGG | 1 cut(s) | 961 |
| BlsI | GCNGC | 3 cut(s) | 556, 886, 1031 |
| Bme18I | GGWCC | 1 cut(s) | 781 |
| BmgT120I | GGNCC | 2 cut(s) | 781, 817 |
| BmiI | GGNNCC | 3 cut(s) | 205, 783, 818 |
| BmsI | GCATC | 3 cut(s) | 195, 721, 897 |
| BpiI | GAAGAC | 1 cut(s) | 747 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 86, 118 |
| BpmI | CTGGAG | 1 cut(s) | 390 |
| BpuEI | CTTGAG | 1 cut(s) | 144 |
| BsaBI | GATNNNNATC | 1 cut(s) | 471 |
| BsaI | GGTCTC | 1 cut(s) | 971 |
| BsaJI | CCNNGG | 4 cut(s) | 777, 961, 980, 1016 |
| BsaWI | WCCGGW | 2 cut(s) | 313, 928 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 598, 1004 |
| Bse118I | RCCGGY | 1 cut(s) | 313 |
| Bse21I | CCTNAGG | 1 cut(s) | 999 |
| Bse8I | GATNNNNATC | 1 cut(s) | 471 |
| BseDI | CCNNGG | 4 cut(s) | 777, 961, 980, 1016 |
| BseGI | GGATG | 2 cut(s) | 587, 839 |
| BseJI | GATNNNNATC | 1 cut(s) | 471 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 598, 1004 |
| BseMII | CTCAG | 1 cut(s) | 125 |
| BsePI | GCGCGC | 1 cut(s) | 677 |
| BseXI | GCAGC | 2 cut(s) | 541, 896 |
| BsgI | GTGCAG | 1 cut(s) | 516 |
| Bsh1236I | CGCG | 1 cut(s) | 679 |
| BshFI | GGCC | 3 cut(s) | 128, 339, 819 |
| BshTI | ACCGGT | 1 cut(s) | 313 |
| BsiSI | CCGG | 2 cut(s) | 314, 929 |
| BslFI | GGGAC | 1 cut(s) | 767 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 598, 1004 |
| BsmAI | GTCTC | 4 cut(s) | 91, 560, 872, 971 |
| BsmBI | CGTCTC | 1 cut(s) | 91 |
| BsmFI | GGGAC | 1 cut(s) | 767 |
| BsnI | GGCC | 3 cut(s) | 128, 339, 819 |
| Bso31I | GGTCTC | 1 cut(s) | 971 |
| Bsp143I | GATC | 8 cut(s) | 89, 163, 232, 253, 346, 472, 578, 610 |
| BspACI | CCGC | 3 cut(s) | 134, 149, 452 |
| BspANI | GGCC | 3 cut(s) | 128, 339, 819 |
| BspCNI | CTCAG | 1 cut(s) | 124 |
| BspFNI | CGCG | 1 cut(s) | 679 |
| BspHI | TCATGA | 1 cut(s) | 502 |
| BspLI | GGNNCC | 3 cut(s) | 205, 783, 818 |
| BspMAI | CTGCAG | 1 cut(s) | 886 |
| BspMI | ACCTGC | 1 cut(s) | 378 |
| BspPI | GGATC | 2 cut(s) | 97, 341 |
| BspQI | GCTCTTC | 1 cut(s) | 380 |
| BspTI | CTTAAG | 1 cut(s) | 745 |
| BspTNI | GGTCTC | 1 cut(s) | 971 |
| BsrFI | RCCGGY | 1 cut(s) | 313 |
| BssAI | RCCGGY | 1 cut(s) | 313 |
| BssECI | CCNNGG | 4 cut(s) | 777, 961, 980, 1016 |
| BssHII | GCGCGC | 1 cut(s) | 677 |
| BssMI | GATC | 8 cut(s) | 89, 163, 232, 253, 346, 472, 578, 610 |
| BssT1I | CCWWGG | 3 cut(s) | 777, 961, 1016 |
| Bst4CI | ACNGT | 2 cut(s) | 224, 541 |
| Bst6I | CTCTTC | 1 cut(s) | 380 |
| BstAFI | CTTAAG | 1 cut(s) | 745 |
| BstC8I | GCNNGC | 3 cut(s) | 28, 679, 719 |
| BstDEI | CTNAG | 4 cut(s) | 49, 111, 991, 999 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1002 |
| BstF5I | GGATG | 2 cut(s) | 587, 839 |
| BstFNI | CGCG | 1 cut(s) | 679 |
| BstH2I | RGCGCY | 1 cut(s) | 413 |
| BstHHI | GCGC | 3 cut(s) | 412, 679, 681 |
| BstKTI | GATC | 8 cut(s) | 92, 166, 235, 256, 349, 475, 581, 613 |
| BstMAI | GTCTC | 4 cut(s) | 91, 560, 872, 971 |
| BstMBI | GATC | 8 cut(s) | 89, 163, 232, 253, 346, 472, 578, 610 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 449, 718 |
| BstNSI | RCATGY | 1 cut(s) | 755 |
| BstSFI | CTRYAG | 1 cut(s) | 882 |
| BstUI | CGCG | 1 cut(s) | 679 |
| BstV1I | GCAGC | 2 cut(s) | 541, 896 |
| BstV2I | GAAGAC | 1 cut(s) | 747 |
| BstX2I | RGATCY | 3 cut(s) | 163, 346, 578 |
| BstYI | RGATCY | 3 cut(s) | 163, 346, 578 |
| Bsu36I | CCTNAGG | 1 cut(s) | 999 |
| BsuI | GTATCC | 2 cut(s) | 236, 410 |
| BsuRI | GGCC | 3 cut(s) | 128, 339, 819 |
| BtgZI | GCGATG | 2 cut(s) | 698, 813 |
| BtsCI | GGATG | 2 cut(s) | 587, 839 |
| BtsI | GCAGTG | 1 cut(s) | 549 |
| BtsIMutI | CAGTG | 2 cut(s) | 195, 549 |
| BveI | ACCTGC | 1 cut(s) | 378 |
| Cac8I | GCNNGC | 3 cut(s) | 28, 679, 719 |
| CciI | TCATGA | 1 cut(s) | 502 |
| CfoI | GCGC | 3 cut(s) | 412, 679, 681 |
| Cfr10I | RCCGGY | 1 cut(s) | 313 |
| Cfr13I | GGNCC | 2 cut(s) | 781, 817 |
| CseI | GACGC | 2 cut(s) | 108, 192 |
| Csp6I | GTAC | 1 cut(s) | 926 |
| CspAI | ACCGGT | 1 cut(s) | 313 |
| CviAII | CATG | 5 cut(s) | 364, 503, 545, 703, 752 |
| CviQI | GTAC | 1 cut(s) | 926 |
| DdeI | CTNAG | 4 cut(s) | 49, 111, 991, 999 |
| DpnI | GATC | 8 cut(s) | 91, 165, 234, 255, 348, 474, 580, 612 |
| DpnII | GATC | 8 cut(s) | 89, 163, 232, 253, 346, 472, 578, 610 |
| EaeI | YGGCCR | 1 cut(s) | 126 |
| Eam1104I | CTCTTC | 1 cut(s) | 380 |
| EarI | CTCTTC | 1 cut(s) | 380 |
| Eco130I | CCWWGG | 3 cut(s) | 777, 961, 1016 |
| Eco31I | GGTCTC | 1 cut(s) | 971 |
| Eco47I | GGWCC | 1 cut(s) | 781 |
| Eco47III | AGCGCT | 1 cut(s) | 411 |
| Eco81I | CCTNAGG | 1 cut(s) | 999 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1002 |
| EcoRI | GAATTC | 1 cut(s) | 932 |
| EcoT14I | CCWWGG | 3 cut(s) | 777, 961, 1016 |
| EcoT22I | ATGCAT | 1 cut(s) | 708 |
| ErhI | CCWWGG | 3 cut(s) | 777, 961, 1016 |
| Esp3I | CGTCTC | 1 cut(s) | 91 |
| FaeI | CATG | 5 cut(s) | 367, 506, 548, 706, 755 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 153, 185 |
| FaqI | GGGAC | 1 cut(s) | 767 |
| FatI | CATG | 5 cut(s) | 363, 502, 544, 702, 751 |
| FauI | CCCGC | 1 cut(s) | 445 |
| FbaI | TGATCA | 1 cut(s) | 472 |
| Fnu4HI | GCNGC | 3 cut(s) | 555, 885, 1030 |
| FokI | GGATG | 2 cut(s) | 574, 826 |
| Fsp4HI | GCNGC | 3 cut(s) | 555, 885, 1030 |
| FspBI | CTAG | 3 cut(s) | 341, 413, 962 |
| GlaI | GCGC | 3 cut(s) | 411, 678, 680 |
| GluI | GCNGC | 3 cut(s) | 555, 885, 1030 |
| GsuI | CTGGAG | 1 cut(s) | 390 |
| HaeII | RGCGCY | 1 cut(s) | 413 |
| HaeIII | GGCC | 3 cut(s) | 128, 339, 819 |
| HapII | CCGG | 2 cut(s) | 314, 929 |
| HgaI | GACGC | 2 cut(s) | 108, 192 |
| HhaI | GCGC | 3 cut(s) | 412, 679, 681 |
| Hin1II | CATG | 5 cut(s) | 367, 506, 548, 706, 755 |
| Hin6I | GCGC | 3 cut(s) | 410, 677, 679 |
| HinP1I | GCGC | 3 cut(s) | 410, 677, 679 |
| HincII | GTYRAC | 1 cut(s) | 70 |
| HindII | GTYRAC | 1 cut(s) | 70 |
| HindIII | AAGCTT | 1 cut(s) | 719 |
| HinfI | GANTC | 3 cut(s) | 467, 797, 1021 |
| HpaII | CCGG | 2 cut(s) | 314, 929 |
| HphI | GGTGA | 2 cut(s) | 37, 887 |
| Hpy166II | GTNNAC | 1 cut(s) | 70 |
| Hpy188I | TCNGA | 7 cut(s) | 61, 94, 182, 472, 565, 610, 981 |
| Hpy188III | TCNNGA | 4 cut(s) | 161, 464, 503, 622 |
| Hpy8I | GTNNAC | 1 cut(s) | 70 |
| HpyAV | CCTTC | 3 cut(s) | 253, 866, 998 |
| HpyCH4III | ACNGT | 2 cut(s) | 224, 541 |
| HpyCH4IV | ACGT | 3 cut(s) | 262, 438, 632 |
| HpyCH4V | TGCA | 6 cut(s) | 533, 544, 557, 706, 884, 1029 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 449, 718 |
| HpyF3I | CTNAG | 4 cut(s) | 49, 111, 991, 999 |
| HpySE526I | ACGT | 3 cut(s) | 262, 438, 632 |
| Hsp92II | CATG | 5 cut(s) | 367, 506, 548, 706, 755 |
| HspAI | GCGC | 3 cut(s) | 410, 677, 679 |
| Ksp22I | TGATCA | 1 cut(s) | 472 |
| Kzo9I | GATC | 8 cut(s) | 89, 163, 232, 253, 346, 472, 578, 610 |
| LguI | GCTCTTC | 1 cut(s) | 380 |
| LmnI | GCTCC | 2 cut(s) | 203, 982 |
| Lsp1109I | GCAGC | 2 cut(s) | 541, 896 |
| LweI | GCATC | 3 cut(s) | 195, 721, 897 |
| MaeI | CTAG | 3 cut(s) | 341, 413, 962 |
| MaeII | ACGT | 3 cut(s) | 262, 438, 632 |
| MaeIII | GTNAC | 2 cut(s) | 193, 263 |
| MalI | GATC | 8 cut(s) | 91, 165, 234, 255, 348, 474, 580, 612 |
| MboI | GATC | 8 cut(s) | 89, 163, 232, 253, 346, 472, 578, 610 |
| MboII | GAAGA | 6 cut(s) | 367, 370, 428, 597, 605, 752 |
| MflI | RGATCY | 3 cut(s) | 163, 346, 578 |
| MlsI | TGGCCA | 1 cut(s) | 128 |
| MluCI | AATT | 6 cut(s) | 593, 857, 889, 917, 932, 944 |
| MluNI | TGGCCA | 1 cut(s) | 128 |
| MlyI | GAGTC | 1 cut(s) | 806 |
| MnlI | CCTC | 4 cut(s) | 281, 414, 811, 975 |
| Mox20I | TGGCCA | 1 cut(s) | 128 |
| Mph1103I | ATGCAT | 1 cut(s) | 708 |
| MscI | TGGCCA | 1 cut(s) | 128 |
| MseI | TTAA | 3 cut(s) | 210, 281, 746 |
| MslI | CAYNNNNRTG | 2 cut(s) | 84, 756 |
| Msp20I | TGGCCA | 1 cut(s) | 128 |
| MspA1I | CMGCKG | 2 cut(s) | 136, 1032 |
| MspCI | CTTAAG | 1 cut(s) | 745 |
| MspI | CCGG | 2 cut(s) | 314, 929 |
| MvnI | CGCG | 1 cut(s) | 679 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 449, 718 |
| NdeII | GATC | 8 cut(s) | 89, 163, 232, 253, 346, 472, 578, 610 |
| NlaIII | CATG | 5 cut(s) | 367, 506, 548, 706, 755 |
| NlaIV | GGNNCC | 3 cut(s) | 205, 783, 818 |
| NmuCI | GTSAC | 2 cut(s) | 193, 263 |
| NsiI | ATGCAT | 1 cut(s) | 708 |
| NspI | RCATGY | 1 cut(s) | 755 |
| PagI | TCATGA | 1 cut(s) | 502 |
| PauI | GCGCGC | 1 cut(s) | 677 |
| PciSI | GCTCTTC | 1 cut(s) | 380 |
| PfeI | GAWTC | 2 cut(s) | 467, 1021 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 598 |
| PinAI | ACCGGT | 1 cut(s) | 313 |
| PkrI | GCNGC | 3 cut(s) | 556, 886, 1031 |
| PleI | GAGTC | 1 cut(s) | 805 |
| PpsI | GAGTC | 1 cut(s) | 805 |
| Psp1406I | AACGTT | 2 cut(s) | 438, 632 |
| PspN4I | GGNNCC | 3 cut(s) | 205, 783, 818 |
| PspPI | GGNCC | 2 cut(s) | 781, 817 |
| PstI | CTGCAG | 1 cut(s) | 886 |
| PsuI | RGATCY | 3 cut(s) | 163, 346, 578 |
| PteI | GCGCGC | 1 cut(s) | 677 |
| PvuII | CAGCTG | 1 cut(s) | 1032 |
| RsaI | GTAC | 1 cut(s) | 927 |
| RsaNI | GTAC | 1 cut(s) | 926 |
| RseI | CAYNNNNRTG | 2 cut(s) | 84, 756 |
| SapI | GCTCTTC | 1 cut(s) | 380 |
| SaqAI | TTAA | 3 cut(s) | 210, 281, 746 |
| SatI | GCNGC | 3 cut(s) | 555, 885, 1030 |
| Sau3AI | GATC | 8 cut(s) | 89, 163, 232, 253, 346, 472, 578, 610 |
| Sau96I | GGNCC | 2 cut(s) | 781, 817 |
| SchI | GAGTC | 1 cut(s) | 806 |
| SfaNI | GCATC | 3 cut(s) | 195, 721, 897 |
| SfcI | CTRYAG | 1 cut(s) | 882 |
| SinI | GGWCC | 1 cut(s) | 781 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 84, 756 |
| SmlI | CTYRAG | 2 cut(s) | 159, 745 |
| SmoI | CTYRAG | 2 cut(s) | 159, 745 |
| Sse9I | AATT | 6 cut(s) | 593, 857, 889, 917, 932, 944 |
| SsiI | CCGC | 3 cut(s) | 134, 149, 452 |
| SspMI | CTAG | 3 cut(s) | 341, 413, 962 |
| StyI | CCWWGG | 3 cut(s) | 777, 961, 1016 |
| TaaI | ACNGT | 2 cut(s) | 224, 541 |
| TaiI | ACGT | 3 cut(s) | 265, 441, 635 |
| TaqII | GACCGA | 1 cut(s) | 282 |
| TasI | AATT | 6 cut(s) | 593, 857, 889, 917, 932, 944 |
| TfiI | GAWTC | 2 cut(s) | 467, 1021 |
| Tru1I | TTAA | 3 cut(s) | 210, 281, 746 |
| Tru9I | TTAA | 3 cut(s) | 210, 281, 746 |
| TscAI | CASTG | 2 cut(s) | 202, 556 |
| TseFI | GTSAC | 2 cut(s) | 193, 263 |
| TseI | GCWGC | 3 cut(s) | 554, 884, 1029 |
| Tsp45I | GTSAC | 2 cut(s) | 193, 263 |
| TspDTI | ATGAA | 6 cut(s) | 380, 449, 491, 774, 824, 885 |
| TspRI | CASTG | 2 cut(s) | 202, 556 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 598 |
| Vha464I | CTTAAG | 1 cut(s) | 745 |
| VpaK11BI | GGWCC | 1 cut(s) | 781 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1002 |
| XapI | RAATTY | 4 cut(s) | 857, 889, 932, 944 |
| XceI | RCATGY | 1 cut(s) | 755 |
| XmaJI | CCTAGG | 1 cut(s) | 961 |
| XspI | CTAG | 3 cut(s) | 341, 413, 962 |
| Zsp2I | ATGCAT | 1 cut(s) | 708 |