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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 201, 1144 |
| AccBSI | CCGCTC | 1 cut(s) | 44 |
| AccI | GTMKAC | 1 cut(s) | 1276 |
| AccII | CGCG | 1 cut(s) | 6 |
| AccIII | TCCGGA | 1 cut(s) | 442 |
| AciI | CCGC | 3 cut(s) | 6, 42, 238 |
| AclWI | GGATC | 4 cut(s) | 284, 545, 1146, 1384 |
| AcsI | RAATTY | 5 cut(s) | 139, 341, 581, 922, 1310 |
| AcyI | GRCGYC | 2 cut(s) | 198, 1141 |
| AfaI | GTAC | 3 cut(s) | 576, 633, 1167 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 433, 490, 1232 |
| AgsI | TTSAA | 6 cut(s) | 78, 316, 346, 928, 1076, 1193 |
| AluBI | AGCT | 4 cut(s) | 615, 622, 848, 988 |
| AluI | AGCT | 4 cut(s) | 615, 622, 848, 988 |
| Alw21I | GWGCWC | 2 cut(s) | 13, 990 |
| Alw26I | GTCTC | 2 cut(s) | 660, 719 |
| AlwI | GGATC | 4 cut(s) | 284, 545, 1146, 1384 |
| Ama87I | CYCGRG | 1 cut(s) | 103 |
| Aor13HI | TCCGGA | 1 cut(s) | 442 |
| AoxI | GGCC | 2 cut(s) | 732, 1078 |
| ApeKI | GCWGC | 4 cut(s) | 461, 502, 748, 1007 |
| ApoI | RAATTY | 5 cut(s) | 139, 341, 581, 922, 1310 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 470, 502 |
| AspLEI | GCGC | 3 cut(s) | 6, 38, 966 |
| AspS9I | GGNCC | 4 cut(s) | 406, 733, 1079, 1267 |
| AsuC2I | CCSGG | 1 cut(s) | 533 |
| AsuHPI | GGTGA | 3 cut(s) | 121, 488, 791 |
| AsuNHI | GCTAGC | 1 cut(s) | 622 |
| AvaI | CYCGRG | 1 cut(s) | 103 |
| AvaII | GGWCC | 2 cut(s) | 406, 1267 |
| BanII | GRGCYC | 1 cut(s) | 990 |
| Bbv12I | GWGCWC | 2 cut(s) | 13, 990 |
| BbvI | GCAGC | 4 cut(s) | 448, 489, 760, 994 |
| BccI | CCATC | 9 cut(s) | 106, 350, 358, 596, 622, 901, 1207, 1262, 1298 |
| BceAI | ACGGC | 1 cut(s) | 155 |
| BclI | TGATCA | 2 cut(s) | 1095, 1116 |
| BcnI | CCSGG | 1 cut(s) | 533 |
| BcoDI | GTCTC | 2 cut(s) | 660, 719 |
| BfaI | CTAG | 4 cut(s) | 540, 623, 659, 840 |
| BfmI | CTRYAG | 1 cut(s) | 1011 |
| BfoI | RGCGCY | 2 cut(s) | 39, 967 |
| BglII | AGATCT | 1 cut(s) | 298 |
| BisI | GCNGC | 5 cut(s) | 238, 462, 503, 749, 1008 |
| BlpI | GCTNAGC | 1 cut(s) | 1064 |
| BlsI | GCNGC | 5 cut(s) | 239, 463, 504, 750, 1009 |
| Bme1390I | CCNGG | 1 cut(s) | 533 |
| Bme18I | GGWCC | 2 cut(s) | 406, 1267 |
| BmeT110I | CYCGRG | 1 cut(s) | 103 |
| BmgT120I | GGNCC | 4 cut(s) | 406, 733, 1079, 1267 |
| BmiI | GGNNCC | 4 cut(s) | 407, 441, 735, 1269 |
| BmrFI | CCNGG | 1 cut(s) | 533 |
| BmsI | GCATC | 2 cut(s) | 448, 816 |
| BmtI | GCTAGC | 1 cut(s) | 626 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1272 |
| BpmI | CTGGAG | 2 cut(s) | 537, 741 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1064 |
| BpuEI | CTTGAG | 1 cut(s) | 683 |
| BpuMI | CCSGG | 1 cut(s) | 533 |
| Bsa29I | ATCGAT | 1 cut(s) | 60 |
| BsaBI | GATNNNNATC | 2 cut(s) | 66, 387 |
| BsaHI | GRCGYC | 2 cut(s) | 198, 1141 |
| BsaJI | CCNNGG | 1 cut(s) | 1283 |
| BsaWI | WCCGGW | 1 cut(s) | 442 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 70, 100, 942, 972 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 433, 490, 1232 |
| Bse118I | RCCGGY | 2 cut(s) | 829, 1105 |
| Bse1I | ACTGG | 1 cut(s) | 520 |
| Bse3DI | GCAATG | 1 cut(s) | 743 |
| Bse8I | GATNNNNATC | 2 cut(s) | 66, 387 |
| BseAI | TCCGGA | 1 cut(s) | 442 |
| BseCI | ATCGAT | 1 cut(s) | 60 |
| BseDI | CCNNGG | 1 cut(s) | 1283 |
| BseGI | GGATG | 6 cut(s) | 93, 98, 463, 834, 891, 1309 |
| BseJI | GATNNNNATC | 2 cut(s) | 66, 387 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 433, 490, 1232 |
| BseMI | GCAATG | 1 cut(s) | 743 |
| BseMII | CTCAG | 1 cut(s) | 1162 |
| BseNI | ACTGG | 1 cut(s) | 520 |
| BseXI | GCAGC | 4 cut(s) | 448, 489, 760, 994 |
| Bsh1236I | CGCG | 1 cut(s) | 6 |
| Bsh1285I | CGRYCG | 1 cut(s) | 60 |
| BshFI | GGCC | 2 cut(s) | 734, 1080 |
| BshVI | ATCGAT | 1 cut(s) | 60 |
| BsiEI | CGRYCG | 1 cut(s) | 60 |
| BsiHKAI | GWGCWC | 2 cut(s) | 13, 990 |
| BsiHKCI | CYCGRG | 1 cut(s) | 103 |
| BsiSI | CCGG | 4 cut(s) | 443, 532, 830, 1106 |
| BslFI | GGGAC | 3 cut(s) | 724, 848, 1152 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 433, 490, 1232 |
| BsmAI | GTCTC | 2 cut(s) | 660, 719 |
| BsmFI | GGGAC | 3 cut(s) | 724, 848, 1152 |
| BsnI | GGCC | 2 cut(s) | 734, 1080 |
| BsoBI | CYCGRG | 1 cut(s) | 103 |
| Bsp1286I | GDGCHC | 2 cut(s) | 13, 990 |
| Bsp13I | TCCGGA | 1 cut(s) | 442 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1064 |
| Bsp19I | CCATGG | 1 cut(s) | 1283 |
| BspACI | CCGC | 3 cut(s) | 6, 42, 238 |
| BspANI | GGCC | 2 cut(s) | 734, 1080 |
| BspCNI | CTCAG | 1 cut(s) | 1161 |
| BspDI | ATCGAT | 1 cut(s) | 60 |
| BspEI | TCCGGA | 1 cut(s) | 442 |
| BspFNI | CGCG | 1 cut(s) | 6 |
| BspHI | TCATGA | 1 cut(s) | 1098 |
| BspLI | GGNNCC | 4 cut(s) | 407, 441, 735, 1269 |
| BspOI | GCTAGC | 1 cut(s) | 626 |
| BspPI | GGATC | 4 cut(s) | 284, 545, 1146, 1384 |
| BspQI | GCTCTTC | 1 cut(s) | 51 |
| BsrBI | CCGCTC | 1 cut(s) | 44 |
| BsrDI | GCAATG | 1 cut(s) | 743 |
| BsrFI | RCCGGY | 2 cut(s) | 829, 1105 |
| BsrI | ACTGG | 1 cut(s) | 520 |
| BssAI | RCCGGY | 2 cut(s) | 829, 1105 |
| BssECI | CCNNGG | 1 cut(s) | 1283 |
| BssNI | GRCGYC | 2 cut(s) | 198, 1141 |
| BssT1I | CCWWGG | 1 cut(s) | 1283 |
| Bst4CI | ACNGT | 1 cut(s) | 1185 |
| Bst6I | CTCTTC | 1 cut(s) | 51 |
| BstACI | GRCGYC | 2 cut(s) | 198, 1141 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 17 |
| BstC8I | GCNNGC | 6 cut(s) | 180, 190, 261, 624, 695, 1107 |
| BstDEI | CTNAG | 3 cut(s) | 759, 1064, 1148 |
| BstDSI | CCRYGG | 1 cut(s) | 1283 |
| BstF5I | GGATG | 6 cut(s) | 93, 98, 463, 834, 891, 1309 |
| BstFNI | CGCG | 1 cut(s) | 6 |
| BstH2I | RGCGCY | 2 cut(s) | 39, 967 |
| BstHHI | GCGC | 3 cut(s) | 6, 38, 966 |
| BstMAI | GTCTC | 2 cut(s) | 660, 719 |
| BstMCI | CGRYCG | 1 cut(s) | 60 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 17, 265, 1013 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1272 |
| BstSCI | CCNGG | 1 cut(s) | 531 |
| BstSFI | CTRYAG | 1 cut(s) | 1011 |
| BstUI | CGCG | 1 cut(s) | 6 |
| BstV1I | GCAGC | 4 cut(s) | 448, 489, 760, 994 |
| BstX2I | RGATCY | 2 cut(s) | 298, 1151 |
| BstYI | RGATCY | 2 cut(s) | 298, 1151 |
| Bsu15I | ATCGAT | 1 cut(s) | 60 |
| BsuRI | GGCC | 2 cut(s) | 734, 1080 |
| BsuTUI | ATCGAT | 1 cut(s) | 60 |
| BtgI | CCRYGG | 1 cut(s) | 1283 |
| BtgZI | GCGATG | 1 cut(s) | 641 |
| BtsCI | GGATG | 6 cut(s) | 93, 98, 463, 834, 891, 1309 |
| Cac8I | GCNNGC | 6 cut(s) | 180, 190, 261, 624, 695, 1107 |
| CciI | TCATGA | 1 cut(s) | 1098 |
| CfoI | GCGC | 3 cut(s) | 6, 38, 966 |
| Cfr10I | RCCGGY | 2 cut(s) | 829, 1105 |
| Cfr13I | GGNCC | 4 cut(s) | 406, 733, 1079, 1267 |
| ClaI | ATCGAT | 1 cut(s) | 60 |
| CseI | GACGC | 1 cut(s) | 337 |
| Csp6I | GTAC | 3 cut(s) | 575, 632, 1166 |
| CviAII | CATG | 5 cut(s) | 133, 776, 1034, 1099, 1284 |
| CviQI | GTAC | 3 cut(s) | 575, 632, 1166 |
| DdeI | CTNAG | 3 cut(s) | 759, 1064, 1148 |
| Eam1104I | CTCTTC | 1 cut(s) | 51 |
| EarI | CTCTTC | 1 cut(s) | 51 |
| Ecl136II | GAGCTC | 1 cut(s) | 988 |
| Eco130I | CCWWGG | 1 cut(s) | 1283 |
| Eco24I | GRGCYC | 1 cut(s) | 990 |
| Eco47I | GGWCC | 2 cut(s) | 406, 1267 |
| Eco53kI | GAGCTC | 1 cut(s) | 988 |
| Eco88I | CYCGRG | 1 cut(s) | 103 |
| EcoICRI | GAGCTC | 1 cut(s) | 988 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1079 |
| EcoT14I | CCWWGG | 1 cut(s) | 1283 |
| EcoT38I | GRGCYC | 1 cut(s) | 990 |
| ErhI | CCWWGG | 1 cut(s) | 1283 |
| FaeI | CATG | 5 cut(s) | 136, 779, 1037, 1102, 1287 |
| FaqI | GGGAC | 3 cut(s) | 724, 848, 1152 |
| FatI | CATG | 5 cut(s) | 132, 775, 1033, 1098, 1283 |
| FbaI | TGATCA | 2 cut(s) | 1095, 1116 |
| FblI | GTMKAC | 1 cut(s) | 1276 |
| Fnu4HI | GCNGC | 5 cut(s) | 238, 462, 503, 749, 1008 |
| FokI | GGATG | 6 cut(s) | 80, 85, 470, 821, 898, 1316 |
| FriOI | GRGCYC | 1 cut(s) | 990 |
| Fsp4HI | GCNGC | 5 cut(s) | 238, 462, 503, 749, 1008 |
| FspBI | CTAG | 4 cut(s) | 540, 623, 659, 840 |
| GlaI | GCGC | 3 cut(s) | 5, 37, 965 |
| GluI | GCNGC | 5 cut(s) | 238, 462, 503, 749, 1008 |
| GsuI | CTGGAG | 2 cut(s) | 537, 741 |
| HaeII | RGCGCY | 2 cut(s) | 39, 967 |
| HaeIII | GGCC | 2 cut(s) | 734, 1080 |
| HapII | CCGG | 4 cut(s) | 443, 532, 830, 1106 |
| HgaI | GACGC | 1 cut(s) | 337 |
| HhaI | GCGC | 3 cut(s) | 6, 38, 966 |
| Hin1I | GRCGYC | 2 cut(s) | 198, 1141 |
| Hin1II | CATG | 5 cut(s) | 136, 779, 1037, 1102, 1287 |
| Hin6I | GCGC | 3 cut(s) | 4, 36, 964 |
| HinP1I | GCGC | 3 cut(s) | 4, 36, 964 |
| HincII | GTYRAC | 1 cut(s) | 1277 |
| HindII | GTYRAC | 1 cut(s) | 1277 |
| HinfI | GANTC | 8 cut(s) | 62, 106, 274, 388, 421, 528, 653, 766 |
| HpaII | CCGG | 4 cut(s) | 443, 532, 830, 1106 |
| HphI | GGTGA | 3 cut(s) | 121, 488, 791 |
| Hpy166II | GTNNAC | 2 cut(s) | 664, 1277 |
| Hpy188I | TCNGA | 9 cut(s) | 67, 72, 273, 279, 410, 771, 852, 1151, 1381 |
| Hpy188III | TCNNGA | 7 cut(s) | 55, 157, 443, 540, 720, 1099, 1258 |
| Hpy8I | GTNNAC | 2 cut(s) | 664, 1277 |
| Hpy99I | CGWCG | 1 cut(s) | 163 |
| HpyAV | CCTTC | 3 cut(s) | 120, 565, 1129 |
| HpyCH4III | ACNGT | 1 cut(s) | 1185 |
| HpyCH4IV | ACGT | 3 cut(s) | 198, 207, 1141 |
| HpyCH4V | TGCA | 3 cut(s) | 595, 748, 1055 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 17, 265, 1013 |
| HpyF3I | CTNAG | 3 cut(s) | 759, 1064, 1148 |
| HpySE526I | ACGT | 3 cut(s) | 198, 207, 1141 |
| Hsp92I | GRCGYC | 2 cut(s) | 198, 1141 |
| Hsp92II | CATG | 5 cut(s) | 136, 779, 1037, 1102, 1287 |
| HspAI | GCGC | 3 cut(s) | 4, 36, 964 |
| Kpn2I | TCCGGA | 1 cut(s) | 442 |
| KroI | GCCGGC | 1 cut(s) | 1105 |
| KroNI | GCCGGC | 1 cut(s) | 1107 |
| Ksp22I | TGATCA | 2 cut(s) | 1095, 1116 |
| LguI | GCTCTTC | 1 cut(s) | 51 |
| LmnI | GCTCC | 3 cut(s) | 8, 620, 993 |
| Lsp1109I | GCAGC | 4 cut(s) | 448, 489, 760, 994 |
| LweI | GCATC | 2 cut(s) | 448, 816 |
| MaeI | CTAG | 4 cut(s) | 540, 623, 659, 840 |
| MaeII | ACGT | 3 cut(s) | 198, 207, 1141 |
| MaeIII | GTNAC | 5 cut(s) | 154, 226, 476, 934, 1220 |
| MbiI | CCGCTC | 1 cut(s) | 44 |
| MboII | GAAGA | 4 cut(s) | 38, 430, 916, 1144 |
| MfeI | CAATTG | 1 cut(s) | 450 |
| MflI | RGATCY | 2 cut(s) | 298, 1151 |
| MhlI | GDGCHC | 2 cut(s) | 13, 990 |
| MlyI | GAGTC | 4 cut(s) | 115, 537, 662, 775 |
| MmeI | TCCRAC | 2 cut(s) | 328, 928 |
| MroI | TCCGGA | 1 cut(s) | 442 |
| MroNI | GCCGGC | 1 cut(s) | 1105 |
| MseI | TTAA | 1 cut(s) | 798 |
| MslI | CAYNNNNRTG | 1 cut(s) | 600 |
| MspI | CCGG | 4 cut(s) | 443, 532, 830, 1106 |
| MspR9I | CCNGG | 1 cut(s) | 533 |
| MunI | CAATTG | 1 cut(s) | 450 |
| MvnI | CGCG | 1 cut(s) | 6 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 17, 265, 1013 |
| NaeI | GCCGGC | 1 cut(s) | 1107 |
| NciI | CCSGG | 1 cut(s) | 533 |
| NcoI | CCATGG | 1 cut(s) | 1283 |
| NgoMIV | GCCGGC | 1 cut(s) | 1105 |
| NheI | GCTAGC | 1 cut(s) | 622 |
| NlaIII | CATG | 5 cut(s) | 136, 779, 1037, 1102, 1287 |
| NlaIV | GGNNCC | 4 cut(s) | 407, 441, 735, 1269 |
| NmuCI | GTSAC | 3 cut(s) | 154, 226, 476 |
| PagI | TCATGA | 1 cut(s) | 1098 |
| PciSI | GCTCTTC | 1 cut(s) | 51 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 204 |
| PdiI | GCCGGC | 1 cut(s) | 1107 |
| PfeI | GAWTC | 4 cut(s) | 62, 274, 388, 421 |
| PflFI | GACNNNGTC | 1 cut(s) | 152 |
| PkrI | GCNGC | 5 cut(s) | 239, 463, 504, 750, 1009 |
| Ple19I | CGATCG | 1 cut(s) | 60 |
| PleI | GAGTC | 4 cut(s) | 114, 536, 661, 774 |
| PpsI | GAGTC | 4 cut(s) | 114, 536, 661, 774 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1272 |
| Psp124BI | GAGCTC | 1 cut(s) | 990 |
| PspN4I | GGNNCC | 4 cut(s) | 407, 441, 735, 1269 |
| PspPI | GGNCC | 4 cut(s) | 406, 733, 1079, 1267 |
| PsuI | RGATCY | 2 cut(s) | 298, 1151 |
| PsyI | GACNNNGTC | 1 cut(s) | 152 |
| PvuI | CGATCG | 1 cut(s) | 60 |
| RsaI | GTAC | 3 cut(s) | 576, 633, 1167 |
| RsaNI | GTAC | 3 cut(s) | 575, 632, 1166 |
| RseI | CAYNNNNRTG | 1 cut(s) | 600 |
| SacI | GAGCTC | 1 cut(s) | 990 |
| SalI | GTCGAC | 1 cut(s) | 1275 |
| SapI | GCTCTTC | 1 cut(s) | 51 |
| SaqAI | TTAA | 1 cut(s) | 798 |
| SatI | GCNGC | 5 cut(s) | 238, 462, 503, 749, 1008 |
| Sau96I | GGNCC | 4 cut(s) | 406, 733, 1079, 1267 |
| SchI | GAGTC | 4 cut(s) | 115, 537, 662, 775 |
| ScrFI | CCNGG | 1 cut(s) | 533 |
| SduI | GDGCHC | 2 cut(s) | 13, 990 |
| SfaNI | GCATC | 2 cut(s) | 448, 816 |
| SfcI | CTRYAG | 1 cut(s) | 1011 |
| SinI | GGWCC | 2 cut(s) | 406, 1267 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 600 |
| SmlI | CTYRAG | 1 cut(s) | 698 |
| SmoI | CTYRAG | 1 cut(s) | 698 |
| SsiI | CCGC | 3 cut(s) | 6, 42, 238 |
| SspI | AATATT | 1 cut(s) | 1042 |
| SspMI | CTAG | 4 cut(s) | 540, 623, 659, 840 |
| SstI | GAGCTC | 1 cut(s) | 990 |
| StyD4I | CCNGG | 1 cut(s) | 531 |
| StyI | CCWWGG | 1 cut(s) | 1283 |
| TaaI | ACNGT | 1 cut(s) | 1185 |
| TaiI | ACGT | 3 cut(s) | 201, 210, 1144 |
| TaqI | TCGA | 5 cut(s) | 56, 60, 372, 970, 1276 |
| TauI | GCSGC | 1 cut(s) | 240 |
| TfiI | GAWTC | 4 cut(s) | 62, 274, 388, 421 |
| Tru1I | TTAA | 1 cut(s) | 798 |
| Tru9I | TTAA | 1 cut(s) | 798 |
| TseFI | GTSAC | 3 cut(s) | 154, 226, 476 |
| TseI | GCWGC | 4 cut(s) | 461, 502, 748, 1007 |
| Tsp45I | GTSAC | 3 cut(s) | 154, 226, 476 |
| TspDTI | ATGAA | 8 cut(s) | 82, 390, 401, 550, 694, 1101, 1115, 1145 |
| TspGWI | ACGGA | 1 cut(s) | 543 |
| Tth111I | GACNNNGTC | 1 cut(s) | 152 |
| VpaK11BI | GGWCC | 2 cut(s) | 406, 1267 |
| XapI | RAATTY | 5 cut(s) | 139, 341, 581, 922, 1310 |
| XbaI | TCTAGA | 1 cut(s) | 539 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 625, 1261 |
| XmiI | GTMKAC | 1 cut(s) | 1276 |
| XspI | CTAG | 4 cut(s) | 540, 623, 659, 840 |
| ZraI | GACGTC | 2 cut(s) | 199, 1142 |