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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 31 |
| AciI | CCGC | 2 cut(s) | 26, 29 |
| AclWI | GGATC | 3 cut(s) | 71, 376, 697 |
| AcsI | RAATTY | 1 cut(s) | 581 |
| AcuI | CTGAAG | 1 cut(s) | 578 |
| AdeI | CACNNNGTG | 1 cut(s) | 134 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 393 |
| AgsI | TTSAA | 4 cut(s) | 46, 140, 164, 611 |
| AjnI | CCWGG | 1 cut(s) | 597 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 398, 430 |
| AluBI | AGCT | 6 cut(s) | 88, 440, 493, 576, 614, 743 |
| AluI | AGCT | 6 cut(s) | 88, 440, 493, 576, 614, 743 |
| Alw26I | GTCTC | 1 cut(s) | 428 |
| AlwI | GGATC | 3 cut(s) | 71, 376, 697 |
| Ama87I | CYCGRG | 2 cut(s) | 81, 526 |
| AoxI | GGCC | 5 cut(s) | 39, 292, 344, 384, 680 |
| ApaI | GGGCCC | 1 cut(s) | 296 |
| ApeKI | GCWGC | 4 cut(s) | 227, 440, 463, 731 |
| ApoI | RAATTY | 1 cut(s) | 581 |
| AspS9I | GGNCC | 3 cut(s) | 292, 293, 681 |
| AsuC2I | CCSGG | 5 cut(s) | 82, 83, 132, 266, 618 |
| AvaI | CYCGRG | 2 cut(s) | 81, 526 |
| BaeGI | GKGCMC | 1 cut(s) | 296 |
| BanII | GRGCYC | 2 cut(s) | 244, 296 |
| BauI | CACGAG | 1 cut(s) | 206 |
| BbvI | GCAGC | 4 cut(s) | 239, 427, 475, 718 |
| BccI | CCATC | 1 cut(s) | 8 |
| BciT130I | CCWGG | 1 cut(s) | 599 |
| BcnI | CCSGG | 5 cut(s) | 82, 83, 132, 266, 618 |
| BcoDI | GTCTC | 1 cut(s) | 428 |
| BfaI | CTAG | 2 cut(s) | 771, 777 |
| BfmI | CTRYAG | 1 cut(s) | 225 |
| BisI | GCNGC | 5 cut(s) | 29, 228, 441, 464, 732 |
| BlsI | GCNGC | 5 cut(s) | 30, 229, 442, 465, 733 |
| Bme1390I | CCNGG | 6 cut(s) | 82, 83, 132, 266, 599, 618 |
| BmeT110I | CYCGRG | 2 cut(s) | 81, 526 |
| BmgT120I | GGNCC | 3 cut(s) | 292, 293, 681 |
| BmiI | GGNNCC | 3 cut(s) | 258, 294, 543 |
| BmrFI | CCNGG | 6 cut(s) | 82, 83, 132, 266, 599, 618 |
| BmrI | ACTGGG | 1 cut(s) | 243 |
| BmsI | GCATC | 4 cut(s) | 452, 521, 552, 718 |
| BmuI | ACTGGG | 1 cut(s) | 243 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 530, 562, 560, 592 |
| BpmI | CTGGAG | 1 cut(s) | 373 |
| BpuMI | CCSGG | 5 cut(s) | 82, 83, 132, 266, 618 |
| BsaJI | CCNNGG | 6 cut(s) | 81, 414, 525, 597, 598, 684 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 751, 781 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 393 |
| Bse1I | ACTGG | 1 cut(s) | 249 |
| Bse3DI | GCAATG | 2 cut(s) | 333, 541 |
| BseBI | CCWGG | 1 cut(s) | 599 |
| BseDI | CCNNGG | 6 cut(s) | 81, 414, 525, 597, 598, 684 |
| BseGI | GGATG | 2 cut(s) | 403, 536 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 393 |
| BseMI | GCAATG | 2 cut(s) | 333, 541 |
| BseMII | CTCAG | 3 cut(s) | 293, 501, 633 |
| BseNI | ACTGG | 1 cut(s) | 249 |
| BseRI | GAGGAG | 1 cut(s) | 416 |
| BseSI | GKGCMC | 1 cut(s) | 296 |
| BseXI | GCAGC | 4 cut(s) | 239, 427, 475, 718 |
| BsgI | GTGCAG | 1 cut(s) | 717 |
| BshFI | GGCC | 5 cut(s) | 41, 294, 346, 386, 682 |
| BsiHKCI | CYCGRG | 2 cut(s) | 81, 526 |
| BsiSI | CCGG | 5 cut(s) | 82, 131, 266, 566, 617 |
| BslFI | GGGAC | 2 cut(s) | 615, 673 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 393 |
| BsmAI | GTCTC | 1 cut(s) | 428 |
| BsmFI | GGGAC | 2 cut(s) | 615, 673 |
| BsmI | GAATGC | 1 cut(s) | 52 |
| BsnI | GGCC | 5 cut(s) | 41, 294, 346, 386, 682 |
| BsoBI | CYCGRG | 2 cut(s) | 81, 526 |
| Bsp120I | GGGCCC | 1 cut(s) | 292 |
| Bsp1286I | GDGCHC | 2 cut(s) | 244, 296 |
| Bsp143I | GATC | 4 cut(s) | 63, 147, 368, 689 |
| BspACI | CCGC | 2 cut(s) | 26, 29 |
| BspANI | GGCC | 5 cut(s) | 41, 294, 346, 386, 682 |
| BspCNI | CTCAG | 3 cut(s) | 294, 502, 634 |
| BspLI | GGNNCC | 3 cut(s) | 258, 294, 543 |
| BspMAI | CTGCAG | 1 cut(s) | 229 |
| BspPI | GGATC | 3 cut(s) | 71, 376, 697 |
| BspQI | GCTCTTC | 1 cut(s) | 249 |
| BsrBI | CCGCTC | 1 cut(s) | 31 |
| BsrDI | GCAATG | 2 cut(s) | 333, 541 |
| BsrI | ACTGG | 1 cut(s) | 249 |
| BssECI | CCNNGG | 6 cut(s) | 81, 414, 525, 597, 598, 684 |
| BssMI | GATC | 4 cut(s) | 63, 147, 368, 689 |
| BssSI | CACGAG | 1 cut(s) | 206 |
| BssT1I | CCWWGG | 2 cut(s) | 414, 684 |
| Bst2BI | CACGAG | 1 cut(s) | 206 |
| Bst2UI | CCWGG | 1 cut(s) | 599 |
| Bst4CI | ACNGT | 2 cut(s) | 320, 653 |
| Bst6I | CTCTTC | 1 cut(s) | 249 |
| BstC8I | GCNNGC | 2 cut(s) | 680, 745 |
| BstDEI | CTNAG | 4 cut(s) | 302, 450, 510, 642 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 391 |
| BstF5I | GGATG | 2 cut(s) | 403, 536 |
| BstKTI | GATC | 4 cut(s) | 66, 150, 371, 692 |
| BstMAI | GTCTC | 1 cut(s) | 428 |
| BstMBI | GATC | 4 cut(s) | 63, 147, 368, 689 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 47, 94, 460, 712, 740, 749 |
| BstNI | CCWGG | 1 cut(s) | 599 |
| BstSCI | CCNGG | 6 cut(s) | 80, 81, 130, 264, 597, 616 |
| BstSFI | CTRYAG | 1 cut(s) | 225 |
| BstSLI | GKGCMC | 1 cut(s) | 296 |
| BstV1I | GCAGC | 4 cut(s) | 239, 427, 475, 718 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 212 |
| BsuRI | GGCC | 5 cut(s) | 41, 294, 346, 386, 682 |
| BtsCI | GGATG | 2 cut(s) | 403, 536 |
| Cac8I | GCNNGC | 2 cut(s) | 680, 745 |
| Cfr13I | GGNCC | 3 cut(s) | 292, 293, 681 |
| Cfr9I | CCCGGG | 1 cut(s) | 81 |
| CviAII | CATG | 2 cut(s) | 212, 339 |
| DdeI | CTNAG | 4 cut(s) | 302, 450, 510, 642 |
| DpnI | GATC | 4 cut(s) | 65, 149, 370, 691 |
| DpnII | GATC | 4 cut(s) | 63, 147, 368, 689 |
| DraIII | CACNNNGTG | 1 cut(s) | 134 |
| Eam1104I | CTCTTC | 1 cut(s) | 249 |
| EarI | CTCTTC | 1 cut(s) | 249 |
| Eco130I | CCWWGG | 2 cut(s) | 414, 684 |
| Eco24I | GRGCYC | 2 cut(s) | 244, 296 |
| Eco32I | GATATC | 1 cut(s) | 286 |
| Eco57I | CTGAAG | 1 cut(s) | 578 |
| Eco88I | CYCGRG | 2 cut(s) | 81, 526 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 391 |
| EcoO109I | RGGNCCY | 2 cut(s) | 293, 681 |
| EcoRII | CCWGG | 1 cut(s) | 597 |
| EcoRV | GATATC | 1 cut(s) | 286 |
| EcoT14I | CCWWGG | 2 cut(s) | 414, 684 |
| EcoT22I | ATGCAT | 1 cut(s) | 52 |
| EcoT38I | GRGCYC | 2 cut(s) | 244, 296 |
| ErhI | CCWWGG | 2 cut(s) | 414, 684 |
| FaeI | CATG | 2 cut(s) | 215, 342 |
| FaiI | YATR | 8 cut(s) | 12, 107, 213, 254, 311, 340, 380, 802 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 108, 140 |
| FaqI | GGGAC | 2 cut(s) | 615, 673 |
| FatI | CATG | 2 cut(s) | 211, 338 |
| Fnu4HI | GCNGC | 5 cut(s) | 29, 228, 441, 464, 732 |
| FokI | GGATG | 2 cut(s) | 410, 543 |
| FriOI | GRGCYC | 2 cut(s) | 244, 296 |
| Fsp4HI | GCNGC | 5 cut(s) | 29, 228, 441, 464, 732 |
| FspBI | CTAG | 2 cut(s) | 771, 777 |
| GluI | GCNGC | 5 cut(s) | 29, 228, 441, 464, 732 |
| GsuI | CTGGAG | 1 cut(s) | 373 |
| HaeIII | GGCC | 5 cut(s) | 41, 294, 346, 386, 682 |
| HapII | CCGG | 5 cut(s) | 82, 131, 266, 566, 617 |
| Hin1II | CATG | 2 cut(s) | 215, 342 |
| HindIII | AAGCTT | 1 cut(s) | 741 |
| HinfI | GANTC | 1 cut(s) | 624 |
| HpaII | CCGG | 5 cut(s) | 82, 131, 266, 566, 617 |
| Hpy188I | TCNGA | 4 cut(s) | 303, 373, 472, 643 |
| Hpy188III | TCNNGA | 2 cut(s) | 61, 528 |
| HpyAV | CCTTC | 1 cut(s) | 306 |
| HpyCH4III | ACNGT | 2 cut(s) | 320, 653 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 47, 94, 460, 712, 740, 749 |
| HpyF3I | CTNAG | 4 cut(s) | 302, 450, 510, 642 |
| Hsp92II | CATG | 2 cut(s) | 215, 342 |
| Kzo9I | GATC | 4 cut(s) | 63, 147, 368, 689 |
| LguI | GCTCTTC | 1 cut(s) | 249 |
| LmnI | GCTCC | 4 cut(s) | 85, 485, 547, 619 |
| Lsp1109I | GCAGC | 4 cut(s) | 239, 427, 475, 718 |
| LweI | GCATC | 4 cut(s) | 452, 521, 552, 718 |
| MaeI | CTAG | 2 cut(s) | 771, 777 |
| MaeIII | GTNAC | 1 cut(s) | 182 |
| MalI | GATC | 4 cut(s) | 65, 149, 370, 691 |
| MbiI | CCGCTC | 1 cut(s) | 31 |
| MboI | GATC | 4 cut(s) | 63, 147, 368, 689 |
| MboII | GAAGA | 3 cut(s) | 148, 236, 571 |
| MhlI | GDGCHC | 2 cut(s) | 244, 296 |
| MluCI | AATT | 4 cut(s) | 278, 497, 520, 581 |
| MnlI | CCTC | 9 cut(s) | 394, 397, 478, 532, 535, 556, 637, 668, 777 |
| Mph1103I | ATGCAT | 1 cut(s) | 52 |
| MseI | TTAA | 4 cut(s) | 519, 585, 758, 783 |
| MslI | CAYNNNNRTG | 1 cut(s) | 210 |
| MspA1I | CMGCKG | 1 cut(s) | 440 |
| MspI | CCGG | 5 cut(s) | 82, 131, 266, 566, 617 |
| MspR9I | CCNGG | 6 cut(s) | 82, 83, 132, 266, 599, 618 |
| Mva1269I | GAATGC | 1 cut(s) | 52 |
| MvaI | CCWGG | 1 cut(s) | 599 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 47, 94, 460, 712, 740, 749 |
| NciI | CCSGG | 5 cut(s) | 82, 83, 132, 266, 618 |
| NdeII | GATC | 4 cut(s) | 63, 147, 368, 689 |
| NlaIII | CATG | 2 cut(s) | 215, 342 |
| NlaIV | GGNNCC | 3 cut(s) | 258, 294, 543 |
| NsiI | ATGCAT | 1 cut(s) | 52 |
| PasI | CCCWGGG | 1 cut(s) | 598 |
| PciSI | GCTCTTC | 1 cut(s) | 249 |
| PctI | GAATGC | 1 cut(s) | 52 |
| PfeI | GAWTC | 1 cut(s) | 624 |
| PkrI | GCNGC | 5 cut(s) | 30, 229, 442, 465, 733 |
| Psp6I | CCWGG | 1 cut(s) | 597 |
| PspGI | CCWGG | 1 cut(s) | 597 |
| PspN4I | GGNNCC | 3 cut(s) | 258, 294, 543 |
| PspOMI | GGGCCC | 1 cut(s) | 292 |
| PspPI | GGNCC | 3 cut(s) | 292, 293, 681 |
| PstI | CTGCAG | 1 cut(s) | 229 |
| PvuII | CAGCTG | 1 cut(s) | 440 |
| RseI | CAYNNNNRTG | 1 cut(s) | 210 |
| SapI | GCTCTTC | 1 cut(s) | 249 |
| SaqAI | TTAA | 4 cut(s) | 519, 585, 758, 783 |
| SatI | GCNGC | 5 cut(s) | 29, 228, 441, 464, 732 |
| Sau3AI | GATC | 4 cut(s) | 63, 147, 368, 689 |
| Sau96I | GGNCC | 3 cut(s) | 292, 293, 681 |
| ScrFI | CCNGG | 6 cut(s) | 82, 83, 132, 266, 599, 618 |
| SduI | GDGCHC | 2 cut(s) | 244, 296 |
| SfaNI | GCATC | 4 cut(s) | 452, 521, 552, 718 |
| SfcI | CTRYAG | 1 cut(s) | 225 |
| SmaI | CCCGGG | 1 cut(s) | 83 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 210 |
| Sse9I | AATT | 4 cut(s) | 278, 497, 520, 581 |
| SsiI | CCGC | 2 cut(s) | 26, 29 |
| SspMI | CTAG | 2 cut(s) | 771, 777 |
| StyD4I | CCNGG | 6 cut(s) | 80, 81, 130, 264, 597, 616 |
| StyI | CCWWGG | 2 cut(s) | 414, 684 |
| TaaI | ACNGT | 2 cut(s) | 320, 653 |
| TasI | AATT | 4 cut(s) | 278, 497, 520, 581 |
| TauI | GCSGC | 1 cut(s) | 31 |
| TfiI | GAWTC | 1 cut(s) | 624 |
| Tru1I | TTAA | 4 cut(s) | 519, 585, 758, 783 |
| Tru9I | TTAA | 4 cut(s) | 519, 585, 758, 783 |
| TseI | GCWGC | 4 cut(s) | 227, 440, 463, 731 |
| TspDTI | ATGAA | 1 cut(s) | 122 |
| TspGWI | ACGGA | 1 cut(s) | 289 |
| TspMI | CCCGGG | 1 cut(s) | 81 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 391 |
| XapI | RAATTY | 1 cut(s) | 581 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 418 |
| XmaI | CCCGGG | 1 cut(s) | 81 |
| XspI | CTAG | 2 cut(s) | 771, 777 |
| Zsp2I | ATGCAT | 1 cut(s) | 52 |