Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 2 cut(s) | 96, 284 |
| Acc36I | ACCTGC | 1 cut(s) | 913 |
| AccB1I | GGYRCC | 3 cut(s) | 139, 650, 991 |
| AccBSI | CCGCTC | 1 cut(s) | 765 |
| AciI | CCGC | 4 cut(s) | 100, 200, 763, 1051 |
| AclWI | GGATC | 2 cut(s) | 877, 890 |
| AcoI | YGGCCR | 1 cut(s) | 51 |
| AcsI | RAATTY | 2 cut(s) | 353, 499 |
| AcuI | CTGAAG | 1 cut(s) | 936 |
| AfaI | GTAC | 2 cut(s) | 297, 1005 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 623, 769, 835, 836, 982, 1018, 1019 |
| AflII | CTTAAG | 1 cut(s) | 875 |
| AgeI | ACCGGT | 1 cut(s) | 586 |
| AgsI | TTSAA | 2 cut(s) | 442, 632 |
| AjnI | CCWGG | 2 cut(s) | 663, 994 |
| AleI | CACNNNNGTG | 1 cut(s) | 467 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 174, 206 |
| AluBI | AGCT | 6 cut(s) | 253, 376, 563, 799, 874, 920 |
| AluI | AGCT | 6 cut(s) | 253, 376, 563, 799, 874, 920 |
| Alw21I | GWGCWC | 1 cut(s) | 762 |
| AlwI | GGATC | 2 cut(s) | 877, 890 |
| AoxI | GGCC | 1 cut(s) | 51 |
| ApeKI | GCWGC | 3 cut(s) | 97, 563, 786 |
| ApoI | RAATTY | 2 cut(s) | 353, 499 |
| AsiGI | ACCGGT | 1 cut(s) | 586 |
| AspLEI | GCGC | 3 cut(s) | 97, 285, 318 |
| AsuC2I | CCSGG | 2 cut(s) | 887, 944 |
| AsuHPI | GGTGA | 4 cut(s) | 67, 118, 231, 855 |
| AsuII | TTCGAA | 2 cut(s) | 309, 716 |
| AsuNHI | GCTAGC | 1 cut(s) | 799 |
| AxyI | CCTNAGG | 1 cut(s) | 164 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 101, 134, 279, 312 |
| BamHI | GGATCC | 1 cut(s) | 882 |
| BanI | GGYRCC | 3 cut(s) | 139, 650, 991 |
| BbsI | GAAGAC | 1 cut(s) | 680 |
| Bbv12I | GWGCWC | 1 cut(s) | 762 |
| BbvI | GCAGC | 3 cut(s) | 109, 550, 798 |
| BccI | CCATC | 1 cut(s) | 224 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 46, 80 |
| BciT130I | CCWGG | 2 cut(s) | 665, 996 |
| BciVI | GTATCC | 1 cut(s) | 421 |
| BcnI | CCSGG | 2 cut(s) | 887, 944 |
| BfaI | CTAG | 4 cut(s) | 560, 623, 800, 966 |
| BfoI | RGCGCY | 1 cut(s) | 319 |
| BfrI | CTTAAG | 1 cut(s) | 875 |
| BfuAI | ACCTGC | 1 cut(s) | 913 |
| BfuI | GTATCC | 1 cut(s) | 421 |
| BglII | AGATCT | 1 cut(s) | 480 |
| BisI | GCNGC | 3 cut(s) | 98, 564, 787 |
| BlsI | GCNGC | 3 cut(s) | 99, 565, 788 |
| Bme1390I | CCNGG | 4 cut(s) | 665, 887, 944, 996 |
| BmiI | GGNNCC | 5 cut(s) | 141, 576, 652, 884, 993 |
| BmrFI | CCNGG | 4 cut(s) | 665, 887, 944, 996 |
| BmsI | GCATC | 3 cut(s) | 4, 294, 347 |
| BmtI | GCTAGC | 1 cut(s) | 803 |
| BoxI | GACNNNNGTC | 1 cut(s) | 680 |
| BpiI | GAAGAC | 1 cut(s) | 680 |
| BpmI | CTGGAG | 2 cut(s) | 215, 585 |
| Bpu14I | TTCGAA | 2 cut(s) | 309, 716 |
| BpuEI | CTTGAG | 1 cut(s) | 552 |
| BpuMI | CCSGG | 2 cut(s) | 887, 944 |
| Bsa29I | ATCGAT | 2 cut(s) | 12, 737 |
| BsaJI | CCNNGG | 3 cut(s) | 664, 768, 981 |
| BsaWI | WCCGGW | 2 cut(s) | 301, 586 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 623, 769, 835, 836, 982, 1018, 1019 |
| Bse118I | RCCGGY | 3 cut(s) | 53, 148, 586 |
| Bse1I | ACTGG | 1 cut(s) | 394 |
| Bse21I | CCTNAGG | 1 cut(s) | 164 |
| Bse3DI | GCAATG | 1 cut(s) | 64 |
| BseBI | CCWGG | 2 cut(s) | 665, 996 |
| BseCI | ATCGAT | 2 cut(s) | 12, 737 |
| BseDI | CCNNGG | 3 cut(s) | 664, 768, 981 |
| BseGI | GGATG | 1 cut(s) | 953 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 623, 769, 835, 836, 982, 1018, 1019 |
| BseMI | GCAATG | 1 cut(s) | 64 |
| BseMII | CTCAG | 2 cut(s) | 178, 468 |
| BseNI | ACTGG | 1 cut(s) | 394 |
| BseXI | GCAGC | 3 cut(s) | 109, 550, 798 |
| BshFI | GGCC | 1 cut(s) | 53 |
| BshNI | GGYRCC | 3 cut(s) | 139, 650, 991 |
| BshTI | ACCGGT | 1 cut(s) | 586 |
| BshVI | ATCGAT | 2 cut(s) | 12, 737 |
| BsiHKAI | GWGCWC | 1 cut(s) | 762 |
| BsiSI | CCGG | 6 cut(s) | 54, 149, 302, 587, 887, 944 |
| BslFI | GGGAC | 3 cut(s) | 794, 812, 995 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 623, 769, 835, 836, 982, 1018, 1019 |
| BsmFI | GGGAC | 3 cut(s) | 794, 812, 995 |
| BsmI | GAATGC | 2 cut(s) | 708, 788 |
| BsnI | GGCC | 1 cut(s) | 53 |
| Bsp119I | TTCGAA | 2 cut(s) | 309, 716 |
| Bsp1286I | GDGCHC | 1 cut(s) | 762 |
| Bsp143I | GATC | 2 cut(s) | 480, 882 |
| BspACI | CCGC | 4 cut(s) | 100, 200, 763, 1051 |
| BspANI | GGCC | 1 cut(s) | 53 |
| BspCNI | CTCAG | 2 cut(s) | 177, 469 |
| BspDI | ATCGAT | 2 cut(s) | 12, 737 |
| BspLI | GGNNCC | 5 cut(s) | 141, 576, 652, 884, 993 |
| BspMI | ACCTGC | 1 cut(s) | 913 |
| BspOI | GCTAGC | 1 cut(s) | 803 |
| BspPI | GGATC | 2 cut(s) | 877, 890 |
| BspQI | GCTCTTC | 1 cut(s) | 306 |
| BspT104I | TTCGAA | 2 cut(s) | 309, 716 |
| BspT107I | GGYRCC | 3 cut(s) | 139, 650, 991 |
| BspTI | CTTAAG | 1 cut(s) | 875 |
| BsrBI | CCGCTC | 1 cut(s) | 765 |
| BsrDI | GCAATG | 1 cut(s) | 64 |
| BsrFI | RCCGGY | 3 cut(s) | 53, 148, 586 |
| BsrI | ACTGG | 1 cut(s) | 394 |
| BssAI | RCCGGY | 3 cut(s) | 53, 148, 586 |
| BssECI | CCNNGG | 3 cut(s) | 664, 768, 981 |
| BssMI | GATC | 2 cut(s) | 480, 882 |
| BssT1I | CCWWGG | 2 cut(s) | 768, 981 |
| Bst2UI | CCWGG | 2 cut(s) | 665, 996 |
| Bst4CI | ACNGT | 1 cut(s) | 114 |
| Bst6I | CTCTTC | 3 cut(s) | 275, 306, 865 |
| BstAFI | CTTAAG | 1 cut(s) | 875 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 344 |
| BstBI | TTCGAA | 2 cut(s) | 309, 716 |
| BstC8I | GCNNGC | 4 cut(s) | 55, 126, 801, 910 |
| BstDEI | CTNAG | 3 cut(s) | 164, 477, 1062 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 621 |
| BstF5I | GGATG | 1 cut(s) | 953 |
| BstH2I | RGCGCY | 1 cut(s) | 319 |
| BstHHI | GCGC | 3 cut(s) | 97, 285, 318 |
| BstKTI | GATC | 2 cut(s) | 483, 885 |
| BstMBI | GATC | 2 cut(s) | 480, 882 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 344, 905 |
| BstNI | CCWGG | 2 cut(s) | 665, 996 |
| BstNSI | RCATGY | 3 cut(s) | 615, 758, 912 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 680 |
| BstSCI | CCNGG | 4 cut(s) | 663, 885, 942, 994 |
| BstV1I | GCAGC | 3 cut(s) | 109, 550, 798 |
| BstV2I | GAAGAC | 1 cut(s) | 680 |
| BstX2I | RGATCY | 2 cut(s) | 480, 882 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 136, 545 |
| BstYI | RGATCY | 2 cut(s) | 480, 882 |
| Bsu15I | ATCGAT | 2 cut(s) | 12, 737 |
| Bsu36I | CCTNAGG | 1 cut(s) | 164 |
| BsuI | GTATCC | 1 cut(s) | 421 |
| BsuRI | GGCC | 1 cut(s) | 53 |
| BsuTUI | ATCGAT | 2 cut(s) | 12, 737 |
| BtsCI | GGATG | 1 cut(s) | 953 |
| BveI | ACCTGC | 1 cut(s) | 913 |
| Cac8I | GCNNGC | 4 cut(s) | 55, 126, 801, 910 |
| CfoI | GCGC | 3 cut(s) | 97, 285, 318 |
| Cfr10I | RCCGGY | 3 cut(s) | 53, 148, 586 |
| ClaI | ATCGAT | 2 cut(s) | 12, 737 |
| Csp6I | GTAC | 2 cut(s) | 296, 1004 |
| CspAI | ACCGGT | 1 cut(s) | 586 |
| CviAII | CATG | 7 cut(s) | 179, 259, 416, 539, 612, 755, 909 |
| CviQI | GTAC | 2 cut(s) | 296, 1004 |
| DdeI | CTNAG | 3 cut(s) | 164, 477, 1062 |
| DpnI | GATC | 2 cut(s) | 482, 884 |
| DpnII | GATC | 2 cut(s) | 480, 882 |
| EaeI | YGGCCR | 1 cut(s) | 51 |
| Eam1104I | CTCTTC | 3 cut(s) | 275, 306, 865 |
| EarI | CTCTTC | 3 cut(s) | 275, 306, 865 |
| Eco130I | CCWWGG | 2 cut(s) | 768, 981 |
| Eco57I | CTGAAG | 1 cut(s) | 936 |
| Eco81I | CCTNAGG | 1 cut(s) | 164 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 621 |
| EcoRII | CCWGG | 2 cut(s) | 663, 994 |
| EcoT14I | CCWWGG | 2 cut(s) | 768, 981 |
| ErhI | CCWWGG | 2 cut(s) | 768, 981 |
| FaeI | CATG | 7 cut(s) | 182, 262, 419, 542, 615, 758, 912 |
| FaqI | GGGAC | 3 cut(s) | 794, 812, 995 |
| FatI | CATG | 7 cut(s) | 178, 258, 415, 538, 611, 754, 908 |
| FauI | CCCGC | 2 cut(s) | 193, 1044 |
| Fnu4HI | GCNGC | 3 cut(s) | 98, 564, 787 |
| FokI | GGATG | 1 cut(s) | 940 |
| Fsp4HI | GCNGC | 3 cut(s) | 98, 564, 787 |
| FspAI | RTGCGCAY | 1 cut(s) | 284 |
| FspBI | CTAG | 4 cut(s) | 560, 623, 800, 966 |
| FspI | TGCGCA | 2 cut(s) | 96, 284 |
| GlaI | GCGC | 3 cut(s) | 96, 284, 317 |
| GluI | GCNGC | 3 cut(s) | 98, 564, 787 |
| GsuI | CTGGAG | 2 cut(s) | 215, 585 |
| HaeII | RGCGCY | 1 cut(s) | 319 |
| HaeIII | GGCC | 1 cut(s) | 53 |
| HapII | CCGG | 6 cut(s) | 54, 149, 302, 587, 887, 944 |
| HhaI | GCGC | 3 cut(s) | 97, 285, 318 |
| Hin1II | CATG | 7 cut(s) | 182, 262, 419, 542, 615, 758, 912 |
| Hin6I | GCGC | 3 cut(s) | 95, 283, 316 |
| HinP1I | GCGC | 3 cut(s) | 95, 283, 316 |
| HincII | GTYRAC | 1 cut(s) | 70 |
| HindII | GTYRAC | 1 cut(s) | 70 |
| HindIII | AAGCTT | 1 cut(s) | 872 |
| HinfI | GANTC | 5 cut(s) | 204, 210, 244, 549, 697 |
| HpaII | CCGG | 6 cut(s) | 54, 149, 302, 587, 887, 944 |
| HphI | GGTGA | 4 cut(s) | 67, 118, 231, 855 |
| Hpy166II | GTNNAC | 6 cut(s) | 70, 557, 817, 951, 963, 1004 |
| Hpy188I | TCNGA | 3 cut(s) | 209, 639, 916 |
| Hpy188III | TCNNGA | 4 cut(s) | 194, 359, 602, 749 |
| Hpy8I | GTNNAC | 6 cut(s) | 70, 557, 817, 951, 963, 1004 |
| HpyAV | CCTTC | 2 cut(s) | 664, 712 |
| HpyCH4III | ACNGT | 1 cut(s) | 114 |
| HpyCH4IV | ACGT | 3 cut(s) | 26, 72, 294 |
| HpyCH4V | TGCA | 5 cut(s) | 17, 35, 338, 786, 908 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 344, 905 |
| HpyF3I | CTNAG | 3 cut(s) | 164, 477, 1062 |
| HpySE526I | ACGT | 3 cut(s) | 26, 72, 294 |
| Hsp92II | CATG | 7 cut(s) | 182, 262, 419, 542, 615, 758, 912 |
| HspAI | GCGC | 3 cut(s) | 95, 283, 316 |
| KroI | GCCGGC | 1 cut(s) | 53 |
| KroNI | GCCGGC | 1 cut(s) | 55 |
| Kzo9I | GATC | 2 cut(s) | 480, 882 |
| LguI | GCTCTTC | 1 cut(s) | 306 |
| LmnI | GCTCC | 3 cut(s) | 765, 770, 925 |
| Lsp1109I | GCAGC | 3 cut(s) | 109, 550, 798 |
| LweI | GCATC | 3 cut(s) | 4, 294, 347 |
| MaeI | CTAG | 4 cut(s) | 560, 623, 800, 966 |
| MaeII | ACGT | 3 cut(s) | 26, 72, 294 |
| MaeIII | GTNAC | 4 cut(s) | 19, 73, 106, 237 |
| MalI | GATC | 2 cut(s) | 482, 884 |
| MbiI | CCGCTC | 1 cut(s) | 765 |
| MboI | GATC | 2 cut(s) | 480, 882 |
| MflI | RGATCY | 2 cut(s) | 480, 882 |
| MhlI | GDGCHC | 1 cut(s) | 762 |
| MluCI | AATT | 3 cut(s) | 353, 396, 499 |
| MlyI | GAGTC | 1 cut(s) | 706 |
| MmeI | TCCRAC | 2 cut(s) | 238, 869 |
| MroNI | GCCGGC | 1 cut(s) | 53 |
| MseI | TTAA | 4 cut(s) | 381, 530, 645, 876 |
| MslI | CAYNNNNRTG | 3 cut(s) | 80, 467, 543 |
| MspA1I | CMGCKG | 1 cut(s) | 100 |
| MspCI | CTTAAG | 1 cut(s) | 875 |
| MspI | CCGG | 6 cut(s) | 54, 149, 302, 587, 887, 944 |
| MspR9I | CCNGG | 4 cut(s) | 665, 887, 944, 996 |
| Mva1269I | GAATGC | 2 cut(s) | 708, 788 |
| MvaI | CCWGG | 2 cut(s) | 665, 996 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 344, 905 |
| NaeI | GCCGGC | 1 cut(s) | 55 |
| NciI | CCSGG | 2 cut(s) | 887, 944 |
| NdeII | GATC | 2 cut(s) | 480, 882 |
| NgoMIV | GCCGGC | 1 cut(s) | 53 |
| NheI | GCTAGC | 1 cut(s) | 799 |
| NlaIII | CATG | 7 cut(s) | 182, 262, 419, 542, 615, 758, 912 |
| NlaIV | GGNNCC | 5 cut(s) | 141, 576, 652, 884, 993 |
| NmuCI | GTSAC | 4 cut(s) | 19, 73, 106, 237 |
| NsbI | TGCGCA | 2 cut(s) | 96, 284 |
| NspI | RCATGY | 3 cut(s) | 615, 758, 912 |
| NspV | TTCGAA | 2 cut(s) | 309, 716 |
| OliI | CACNNNNGTG | 1 cut(s) | 467 |
| PaeI | GCATGC | 1 cut(s) | 912 |
| PciSI | GCTCTTC | 1 cut(s) | 306 |
| PctI | GAATGC | 2 cut(s) | 708, 788 |
| PdiI | GCCGGC | 1 cut(s) | 55 |
| PfeI | GAWTC | 4 cut(s) | 204, 210, 244, 549 |
| PfoI | TCCNGGA | 1 cut(s) | 885 |
| PinAI | ACCGGT | 1 cut(s) | 586 |
| PkrI | GCNGC | 3 cut(s) | 99, 565, 788 |
| PleI | GAGTC | 1 cut(s) | 705 |
| PpsI | GAGTC | 1 cut(s) | 705 |
| PshAI | GACNNNNGTC | 1 cut(s) | 680 |
| Psp6I | CCWGG | 2 cut(s) | 663, 994 |
| PspGI | CCWGG | 2 cut(s) | 663, 994 |
| PspN4I | GGNNCC | 5 cut(s) | 141, 576, 652, 884, 993 |
| PsuI | RGATCY | 2 cut(s) | 480, 882 |
| RsaI | GTAC | 2 cut(s) | 297, 1005 |
| RsaNI | GTAC | 2 cut(s) | 296, 1004 |
| RseI | CAYNNNNRTG | 3 cut(s) | 80, 467, 543 |
| SapI | GCTCTTC | 1 cut(s) | 306 |
| SaqAI | TTAA | 4 cut(s) | 381, 530, 645, 876 |
| SatI | GCNGC | 3 cut(s) | 98, 564, 787 |
| Sau3AI | GATC | 2 cut(s) | 480, 882 |
| SchI | GAGTC | 1 cut(s) | 706 |
| ScrFI | CCNGG | 4 cut(s) | 665, 887, 944, 996 |
| SduI | GDGCHC | 1 cut(s) | 762 |
| SfaNI | GCATC | 3 cut(s) | 4, 294, 347 |
| SfuI | TTCGAA | 2 cut(s) | 309, 716 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 80, 467, 543 |
| SmlI | CTYRAG | 2 cut(s) | 567, 875 |
| SmoI | CTYRAG | 2 cut(s) | 567, 875 |
| SphI | GCATGC | 1 cut(s) | 912 |
| Sse9I | AATT | 3 cut(s) | 353, 396, 499 |
| SsiI | CCGC | 4 cut(s) | 100, 200, 763, 1051 |
| SspI | AATATT | 1 cut(s) | 334 |
| SspMI | CTAG | 4 cut(s) | 560, 623, 800, 966 |
| StyD4I | CCNGG | 4 cut(s) | 663, 885, 942, 994 |
| StyI | CCWWGG | 2 cut(s) | 768, 981 |
| TaaI | ACNGT | 1 cut(s) | 114 |
| TaiI | ACGT | 3 cut(s) | 29, 75, 297 |
| TaqI | TCGA | 7 cut(s) | 12, 309, 360, 700, 716, 737, 748 |
| TasI | AATT | 3 cut(s) | 353, 396, 499 |
| TatI | WGTACW | 1 cut(s) | 1003 |
| TfiI | GAWTC | 4 cut(s) | 204, 210, 244, 549 |
| Tru1I | TTAA | 4 cut(s) | 381, 530, 645, 876 |
| Tru9I | TTAA | 4 cut(s) | 381, 530, 645, 876 |
| TseFI | GTSAC | 4 cut(s) | 19, 73, 106, 237 |
| TseI | GCWGC | 3 cut(s) | 97, 563, 786 |
| Tsp45I | GTSAC | 4 cut(s) | 19, 73, 106, 237 |
| TspDTI | ATGAA | 2 cut(s) | 167, 236 |
| Vha464I | CTTAAG | 1 cut(s) | 875 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 621 |
| XapI | RAATTY | 2 cut(s) | 353, 499 |
| XceI | RCATGY | 3 cut(s) | 615, 758, 912 |
| XspI | CTAG | 4 cut(s) | 560, 623, 800, 966 |