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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 242 |
| Acc36I | ACCTGC | 1 cut(s) | 737 |
| AccB1I | GGYRCC | 1 cut(s) | 418 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 769 |
| AciI | CCGC | 1 cut(s) | 293 |
| AclI | AACGTT | 1 cut(s) | 783 |
| AcoI | YGGCCR | 1 cut(s) | 294 |
| AcsI | RAATTY | 1 cut(s) | 193 |
| AcuI | CTGAAG | 1 cut(s) | 419 |
| AfaI | GTAC | 4 cut(s) | 81, 693, 768, 822 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 363, 364, 415, 769, 862 |
| AflIII | ACRYGT | 1 cut(s) | 128 |
| AgsI | TTSAA | 7 cut(s) | 158, 557, 579, 604, 713, 736, 759 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 57 |
| AjnI | CCWGG | 1 cut(s) | 421 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 185, 217 |
| AluBI | AGCT | 5 cut(s) | 290, 334, 469, 495, 678 |
| AluI | AGCT | 5 cut(s) | 290, 334, 469, 495, 678 |
| Alw26I | GTCTC | 1 cut(s) | 713 |
| Ama87I | CYCGRG | 3 cut(s) | 34, 357, 661 |
| AoxI | GGCC | 1 cut(s) | 294 |
| ApeKI | GCWGC | 1 cut(s) | 290 |
| ApoI | RAATTY | 1 cut(s) | 193 |
| AspA2I | CCTAGG | 1 cut(s) | 620 |
| AspLEI | GCGC | 2 cut(s) | 7, 243 |
| AspS9I | GGNCC | 1 cut(s) | 151 |
| AsuC2I | CCSGG | 2 cut(s) | 358, 359 |
| AvaI | CYCGRG | 3 cut(s) | 34, 357, 661 |
| AvaII | GGWCC | 1 cut(s) | 151 |
| AvrII | CCTAGG | 1 cut(s) | 620 |
| BaeGI | GKGCMC | 1 cut(s) | 41 |
| BanI | GGYRCC | 1 cut(s) | 418 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 138, 170 |
| BbsI | GAAGAC | 1 cut(s) | 410 |
| BbvI | GCAGC | 1 cut(s) | 277 |
| BccI | CCATC | 2 cut(s) | 290, 425 |
| BciT130I | CCWGG | 1 cut(s) | 423 |
| BcnI | CCSGG | 2 cut(s) | 358, 359 |
| BcoDI | GTCTC | 1 cut(s) | 713 |
| BfaI | CTAG | 3 cut(s) | 380, 621, 683 |
| BfoI | RGCGCY | 1 cut(s) | 8 |
| BfuAI | ACCTGC | 1 cut(s) | 737 |
| BglII | AGATCT | 1 cut(s) | 121 |
| BisI | GCNGC | 2 cut(s) | 291, 294 |
| BlnI | CCTAGG | 1 cut(s) | 620 |
| BlsI | GCNGC | 2 cut(s) | 292, 295 |
| BmcAI | AGTACT | 1 cut(s) | 768 |
| Bme1390I | CCNGG | 3 cut(s) | 358, 359, 423 |
| Bme18I | GGWCC | 1 cut(s) | 151 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 57 |
| BmeT110I | CYCGRG | 3 cut(s) | 34, 357, 661 |
| BmgT120I | GGNCC | 1 cut(s) | 151 |
| BmiI | GGNNCC | 3 cut(s) | 152, 352, 420 |
| BmrFI | CCNGG | 3 cut(s) | 358, 359, 423 |
| BmsI | GCATC | 4 cut(s) | 230, 252, 364, 870 |
| BpiI | GAAGAC | 1 cut(s) | 410 |
| BpmI | CTGGAG | 1 cut(s) | 511 |
| BpuEI | CTTGAG | 2 cut(s) | 442, 845 |
| BpuMI | CCSGG | 2 cut(s) | 358, 359 |
| BsaAI | YACGTR | 1 cut(s) | 129 |
| BsaJI | CCNNGG | 3 cut(s) | 357, 620, 660 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 363, 364, 415, 769, 862 |
| Bse1I | ACTGG | 3 cut(s) | 270, 297, 774 |
| BseBI | CCWGG | 1 cut(s) | 423 |
| BseDI | CCNNGG | 3 cut(s) | 357, 620, 660 |
| BseGI | GGATG | 6 cut(s) | 22, 61, 331, 673, 778, 811 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 363, 364, 415, 769, 862 |
| BseMII | CTCAG | 1 cut(s) | 200 |
| BseNI | ACTGG | 3 cut(s) | 270, 297, 774 |
| BseRI | GAGGAG | 1 cut(s) | 851 |
| BseSI | GKGCMC | 1 cut(s) | 41 |
| BseXI | GCAGC | 1 cut(s) | 277 |
| BsgI | GTGCAG | 1 cut(s) | 246 |
| BshFI | GGCC | 1 cut(s) | 296 |
| BshNI | GGYRCC | 1 cut(s) | 418 |
| BsiHKCI | CYCGRG | 3 cut(s) | 34, 357, 661 |
| BsiSI | CCGG | 2 cut(s) | 275, 358 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 363, 364, 415, 769, 862 |
| BsmAI | GTCTC | 1 cut(s) | 713 |
| BsnI | GGCC | 1 cut(s) | 296 |
| BsoBI | CYCGRG | 3 cut(s) | 34, 357, 661 |
| Bsp1286I | GDGCHC | 1 cut(s) | 41 |
| Bsp143I | GATC | 2 cut(s) | 121, 810 |
| BspACI | CCGC | 1 cut(s) | 293 |
| BspANI | GGCC | 1 cut(s) | 296 |
| BspCNI | CTCAG | 1 cut(s) | 199 |
| BspLI | GGNNCC | 3 cut(s) | 152, 352, 420 |
| BspMI | ACCTGC | 1 cut(s) | 737 |
| BspQI | GCTCTTC | 1 cut(s) | 264 |
| BspT107I | GGYRCC | 1 cut(s) | 418 |
| BsrI | ACTGG | 3 cut(s) | 270, 297, 774 |
| BssECI | CCNNGG | 3 cut(s) | 357, 620, 660 |
| BssMI | GATC | 2 cut(s) | 121, 810 |
| BssT1I | CCWWGG | 1 cut(s) | 620 |
| Bst2UI | CCWGG | 1 cut(s) | 423 |
| Bst4CI | ACNGT | 3 cut(s) | 228, 652, 724 |
| Bst6I | CTCTTC | 1 cut(s) | 264 |
| BstBAI | YACGTR | 1 cut(s) | 129 |
| BstC8I | GCNNGC | 1 cut(s) | 790 |
| BstDEI | CTNAG | 1 cut(s) | 186 |
| BstF5I | GGATG | 6 cut(s) | 22, 61, 331, 673, 778, 811 |
| BstH2I | RGCGCY | 1 cut(s) | 8 |
| BstHHI | GCGC | 2 cut(s) | 7, 243 |
| BstKTI | GATC | 2 cut(s) | 124, 813 |
| BstMAI | GTCTC | 1 cut(s) | 713 |
| BstMBI | GATC | 2 cut(s) | 121, 810 |
| BstNI | CCWGG | 1 cut(s) | 423 |
| BstSCI | CCNGG | 3 cut(s) | 356, 357, 421 |
| BstSLI | GKGCMC | 1 cut(s) | 41 |
| BstV1I | GCAGC | 1 cut(s) | 277 |
| BstV2I | GAAGAC | 1 cut(s) | 410 |
| BstX2I | RGATCY | 1 cut(s) | 121 |
| BstYI | RGATCY | 1 cut(s) | 121 |
| BsuRI | GGCC | 1 cut(s) | 296 |
| BtsCI | GGATG | 6 cut(s) | 22, 61, 331, 673, 778, 811 |
| BtsIMutI | CAGTG | 3 cut(s) | 224, 263, 846 |
| BveI | ACCTGC | 1 cut(s) | 737 |
| Cac8I | GCNNGC | 1 cut(s) | 790 |
| CfoI | GCGC | 2 cut(s) | 7, 243 |
| Cfr13I | GGNCC | 1 cut(s) | 151 |
| Cfr9I | CCCGGG | 1 cut(s) | 357 |
| CsiI | ACCWGGT | 1 cut(s) | 421 |
| Csp6I | GTAC | 4 cut(s) | 80, 692, 767, 821 |
| CviAII | CATG | 1 cut(s) | 453 |
| CviQI | GTAC | 4 cut(s) | 80, 692, 767, 821 |
| DdeI | CTNAG | 1 cut(s) | 186 |
| DpnI | GATC | 2 cut(s) | 123, 812 |
| DpnII | GATC | 2 cut(s) | 121, 810 |
| DriI | GACNNNNNGTC | 1 cut(s) | 57 |
| EaeI | YGGCCR | 1 cut(s) | 294 |
| Eam1104I | CTCTTC | 1 cut(s) | 264 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 57 |
| EarI | CTCTTC | 1 cut(s) | 264 |
| Eco130I | CCWWGG | 1 cut(s) | 620 |
| Eco32I | GATATC | 1 cut(s) | 853 |
| Eco47I | GGWCC | 1 cut(s) | 151 |
| Eco57I | CTGAAG | 1 cut(s) | 419 |
| Eco88I | CYCGRG | 3 cut(s) | 34, 357, 661 |
| EcoO109I | RGGNCCY | 1 cut(s) | 151 |
| EcoRII | CCWGG | 1 cut(s) | 421 |
| EcoRV | GATATC | 1 cut(s) | 853 |
| EcoT14I | CCWWGG | 1 cut(s) | 620 |
| ErhI | CCWWGG | 1 cut(s) | 620 |
| FaeI | CATG | 1 cut(s) | 456 |
| FaiI | YATR | 9 cut(s) | 148, 254, 323, 454, 534, 588, 752, 863, 878 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 377, 409 |
| FatI | CATG | 1 cut(s) | 452 |
| Fnu4HI | GCNGC | 2 cut(s) | 291, 294 |
| FokI | GGATG | 6 cut(s) | 29, 48, 338, 680, 785, 818 |
| Fsp4HI | GCNGC | 2 cut(s) | 291, 294 |
| FspAI | RTGCGCAY | 1 cut(s) | 242 |
| FspBI | CTAG | 3 cut(s) | 380, 621, 683 |
| FspI | TGCGCA | 1 cut(s) | 242 |
| GlaI | GCGC | 2 cut(s) | 6, 242 |
| GluI | GCNGC | 2 cut(s) | 291, 294 |
| GsuI | CTGGAG | 1 cut(s) | 511 |
| HaeII | RGCGCY | 1 cut(s) | 8 |
| HaeIII | GGCC | 1 cut(s) | 296 |
| HapII | CCGG | 2 cut(s) | 275, 358 |
| HhaI | GCGC | 2 cut(s) | 7, 243 |
| Hin1II | CATG | 1 cut(s) | 456 |
| Hin6I | GCGC | 2 cut(s) | 5, 241 |
| HinP1I | GCGC | 2 cut(s) | 5, 241 |
| HinfI | GANTC | 1 cut(s) | 97 |
| HpaII | CCGG | 2 cut(s) | 275, 358 |
| Hpy166II | GTNNAC | 1 cut(s) | 781 |
| Hpy188I | TCNGA | 2 cut(s) | 96, 189 |
| Hpy188III | TCNNGA | 4 cut(s) | 26, 176, 317, 397 |
| Hpy8I | GTNNAC | 1 cut(s) | 781 |
| HpyAV | CCTTC | 7 cut(s) | 75, 85, 164, 340, 585, 598, 867 |
| HpyCH4III | ACNGT | 3 cut(s) | 228, 652, 724 |
| HpyCH4IV | ACGT | 3 cut(s) | 21, 128, 783 |
| HpyCH4V | TGCA | 8 cut(s) | 118, 263, 441, 474, 500, 536, 788, 883 |
| HpyF3I | CTNAG | 1 cut(s) | 186 |
| HpySE526I | ACGT | 3 cut(s) | 21, 128, 783 |
| Hsp92II | CATG | 1 cut(s) | 456 |
| HspAI | GCGC | 2 cut(s) | 5, 241 |
| Kzo9I | GATC | 2 cut(s) | 121, 810 |
| LguI | GCTCTTC | 1 cut(s) | 264 |
| LmnI | GCTCC | 2 cut(s) | 466, 492 |
| Lsp1109I | GCAGC | 1 cut(s) | 277 |
| LweI | GCATC | 4 cut(s) | 230, 252, 364, 870 |
| MabI | ACCWGGT | 1 cut(s) | 421 |
| MaeI | CTAG | 3 cut(s) | 380, 621, 683 |
| MaeII | ACGT | 3 cut(s) | 21, 128, 783 |
| MaeIII | GTNAC | 3 cut(s) | 49, 308, 844 |
| MalI | GATC | 2 cut(s) | 123, 812 |
| MboI | GATC | 2 cut(s) | 121, 810 |
| MboII | GAAGA | 5 cut(s) | 202, 281, 385, 412, 415 |
| MfeI | CAATTG | 1 cut(s) | 42 |
| MflI | RGATCY | 1 cut(s) | 121 |
| MhlI | GDGCHC | 1 cut(s) | 41 |
| MluCI | AATT | 2 cut(s) | 42, 193 |
| MlyI | GAGTC | 1 cut(s) | 91 |
| MnlI | CCTC | 9 cut(s) | 102, 195, 267, 536, 594, 670, 796, 829, 832 |
| MseI | TTAA | 2 cut(s) | 339, 726 |
| MspI | CCGG | 2 cut(s) | 275, 358 |
| MspR9I | CCNGG | 3 cut(s) | 358, 359, 423 |
| MunI | CAATTG | 1 cut(s) | 42 |
| MvaI | CCWGG | 1 cut(s) | 423 |
| NciI | CCSGG | 2 cut(s) | 358, 359 |
| NdeII | GATC | 2 cut(s) | 121, 810 |
| NlaIII | CATG | 1 cut(s) | 456 |
| NlaIV | GGNNCC | 3 cut(s) | 152, 352, 420 |
| NmuCI | GTSAC | 2 cut(s) | 49, 844 |
| NsbI | TGCGCA | 1 cut(s) | 242 |
| PciSI | GCTCTTC | 1 cut(s) | 264 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 769 |
| PkrI | GCNGC | 2 cut(s) | 292, 295 |
| PleI | GAGTC | 1 cut(s) | 91 |
| PpsI | GAGTC | 1 cut(s) | 91 |
| Ppu21I | YACGTR | 1 cut(s) | 129 |
| PpuMI | RGGWCCY | 1 cut(s) | 151 |
| Psp1406I | AACGTT | 1 cut(s) | 783 |
| Psp5II | RGGWCCY | 1 cut(s) | 151 |
| Psp6I | CCWGG | 1 cut(s) | 421 |
| PspGI | CCWGG | 1 cut(s) | 421 |
| PspN4I | GGNNCC | 3 cut(s) | 152, 352, 420 |
| PspPI | GGNCC | 1 cut(s) | 151 |
| PspPPI | RGGWCCY | 1 cut(s) | 151 |
| PsuI | RGATCY | 1 cut(s) | 121 |
| RsaI | GTAC | 4 cut(s) | 81, 693, 768, 822 |
| RsaNI | GTAC | 4 cut(s) | 80, 692, 767, 821 |
| SapI | GCTCTTC | 1 cut(s) | 264 |
| SaqAI | TTAA | 2 cut(s) | 339, 726 |
| SatI | GCNGC | 2 cut(s) | 291, 294 |
| Sau3AI | GATC | 2 cut(s) | 121, 810 |
| Sau96I | GGNCC | 1 cut(s) | 151 |
| ScaI | AGTACT | 1 cut(s) | 768 |
| SchI | GAGTC | 1 cut(s) | 91 |
| ScrFI | CCNGG | 3 cut(s) | 358, 359, 423 |
| SduI | GDGCHC | 1 cut(s) | 41 |
| SexAI | ACCWGGT | 1 cut(s) | 421 |
| SfaNI | GCATC | 4 cut(s) | 230, 252, 364, 870 |
| SinI | GGWCC | 1 cut(s) | 151 |
| SmaI | CCCGGG | 1 cut(s) | 359 |
| SmlI | CTYRAG | 2 cut(s) | 457, 824 |
| SmoI | CTYRAG | 2 cut(s) | 457, 824 |
| Sse9I | AATT | 2 cut(s) | 42, 193 |
| SsiI | CCGC | 1 cut(s) | 293 |
| SspI | AATATT | 1 cut(s) | 709 |
| SspMI | CTAG | 3 cut(s) | 380, 621, 683 |
| StyD4I | CCNGG | 3 cut(s) | 356, 357, 421 |
| StyI | CCWWGG | 1 cut(s) | 620 |
| TaaI | ACNGT | 3 cut(s) | 228, 652, 724 |
| TaiI | ACGT | 3 cut(s) | 24, 131, 786 |
| TaqI | TCGA | 3 cut(s) | 88, 565, 813 |
| TasI | AATT | 2 cut(s) | 42, 193 |
| TatI | WGTACW | 2 cut(s) | 766, 820 |
| TauI | GCSGC | 1 cut(s) | 296 |
| Tru1I | TTAA | 2 cut(s) | 339, 726 |
| Tru9I | TTAA | 2 cut(s) | 339, 726 |
| TscAI | CASTG | 3 cut(s) | 231, 270, 853 |
| TseFI | GTSAC | 2 cut(s) | 49, 844 |
| TseI | GCWGC | 1 cut(s) | 290 |
| Tsp45I | GTSAC | 2 cut(s) | 49, 844 |
| TspMI | CCCGGG | 1 cut(s) | 357 |
| TspRI | CASTG | 3 cut(s) | 231, 270, 853 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 769 |
| VpaK11BI | GGWCC | 1 cut(s) | 151 |
| XapI | RAATTY | 1 cut(s) | 193 |
| XmaI | CCCGGG | 1 cut(s) | 357 |
| XmaJI | CCTAGG | 1 cut(s) | 620 |
| XspI | CTAG | 3 cut(s) | 380, 621, 683 |
| ZrmI | AGTACT | 1 cut(s) | 768 |