Rmu_sc0010781.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010781.1
OG0000032
Physical Location & Seq
Reverse (-)
15923 .. 21888
5966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010781.1_g000005.1.cds

Sequence Viewer

Length: 1740 bp
atggaaggcgcgtcgcagctggtacggactggaaggaagtcatcgatagaaagtgagccgagaacgctgaggtttcatcagatccaatatgcaagggaggcagctgagtacgtgatgaatacaaaggatttagaagaagcaaagcgcattttcactcagggattacagccagtagtgagcgtgatgaaaccaactggagaggagatgacggattcggttgacgaatttgagtattcagaagatcgataccgattatctgaactaagggatcccaaccctagcacactgagcgacgtacgtcgctcctccttcgatctcagtactgccaacatatccaacatcgacgttgtcgcctcttcctttgttgcatcgctggcgcttgctagcagcgatgtgattgatgtctccaatgcctctggtggaatccaacgaagggtcaagcagtcttttctattggcacatcctctggtgaagaagccgacatccttaaacgatctgaagcgctttctcaggcgagtgtggatcttggagaaggattttaagattcaagaacaagcaccaaatcgtttcgtcctagctttcgacctgagaaaggatagaaataaagttttgaagggaggaccatggagattcaatcaagccctgattgtactacaggagtatgatggcgttacgcctattgaggacgtcgctctgactctactcttattatgggtttgcatcctaaacatcatgccgctgtttgaagagcctgacatgattaggaatattgcttcggtggctagtaagttccttgaactggatgataaattgtttgcgaatcagggcaaggttagagtgtgtgtggctcatgatatctcaaaaccatttttcctcaagaaaaccctaaaacttgcatccggggtggaagctgaaatttcgtatttttttgagaacttgggtgtgcaaacaccgattctaccgaatatttgcaggtcactcttccaatccaaggaagcaagcaaaccacgtaagcctattatactgcatgaaagagacctagtgctctctgagatagaagaggaagtccatcaacctttgatgctggcagtgattccagcctcgaccactcaagttccaaacccgaaagcgaatgctctagatgcatgcttggagattatgggagtgtcaccatctataccgactgaaaacactcaaggtttgaaagctcctgaagacacaagtatacctgaagttgtggaggaaatagctaaggagaataagggtgacaaatgtcaactacctccctctcgtacaaaatctccccaaaagctcaagttcctgctaccggagttcttcaaaccgctcctcctcgaggttcaagcaaagaaacaaaagatgccaatgttcaccagtaagttctttgctaggttcctgggaatggttgaagcacttggaaatattatagtaccaaaggagatgtggtctctgcaaaccctgaaccaaaaaagaagagaggaaggccgttgggggcaaaaaacaaacatcctccaaagtcgaagaagcacttggaaatattctagtaccaaaggagatgtggtctatgcaaaccctgaaccaaaaaagaagagaggaaggccgttgggggcaaaaaacaaacatcctccaaagtcgaagaaggtaactgatgcacaagagacttgttatgcttatctctcaatgcctcctagccctactattaagggcaaggagaaaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

579

Amino Acids

65.5

Weight (kDa)

9.28

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000032)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20531 FvH4_1g22101 FvH4_1g26161 FvH4_2g06802 FvH4_2g07851 FvH4_2g07920 FvH4_2g11481 FvH4_2g14491 FvH4_2g14510 FvH4_3g02671 FvH4_3g10870 FvH4_3g16811 FvH4_3g18871 FvH4_3g20011 FvH4_3g29181 FvH4_3g30101 FvH4_3g33941 FvH4_4g08031 FvH4_4g10192 FvH4_4g20791 FvH4_5g02440 FvH4_5g03261 FvH4_5g15791 FvH4_5g22472 FvH4_5g23680 FvH4_5g26530 FvH4_5g26540 FvH4_5g30241 FvH4_5g32311 FvH4_5g38943 FvH4_6g05152 FvH4_6g10481 FvH4_6g14353 FvH4_6g17850 FvH4_6g19460 FvH4_6g23861 FvH4_6g30881 FvH4_6g31722 FvH4_6g40031 FvH4_6g46031 FvH4_6g49021 FvH4_7g12530 FvH4_7g15960
pyrus_communis pycom09g18450
rosa_chinensis RchiOBHm_Chr1g0341771 RchiOBHm_Chr1g0354791 RchiOBHm_Chr2g0095751 RchiOBHm_Chr5g0030691 RchiOBHm_Chr7g0181741 RchiOBHm_Chr7g0222721 RchiOBHm_Chr7g0243191
rosa_laevigata RLG00000001405 RLG00000001878 RLG00000002053 RLG00000002361 RLG00000003846 RLG00000012639 RLG00000013326 RLG00000014331 RLG00000017340 RLG00000017548 RLG00000018177 RLG00000018372 RLG00000019006 RLG00000019406 RLG00000019522 RLG00000019922 RLG00000020489 RLG00000022399 RLG00000023433 RLG00000027372 RLG00000028576 RLG00000028590 RLG00000028947 RLG00000032552 RLG00000033183 RLG00000033245 RLG00000033730 RLG00000034443 RLG00000034772 RLG00000036008
rosa_multiflora Rmu_co8029972.1_g000001 Rmu_co8044978.1_g000001 Rmu_co8338363.1_g000001 Rmu_co8426431.1_g000002 Rmu_co8457575.1_g000001 Rmu_sc0000010.1_g000025 Rmu_sc0000197.1_g000018 Rmu_sc0000220.1_g000009 Rmu_sc0000221.1_g000012 Rmu_sc0000258.1_g000002 Rmu_sc0000284.1_g000015 Rmu_sc0000303.1_g000021 Rmu_sc0000309.1_g000015 Rmu_sc0000317.1_g000017 Rmu_sc0000355.1_g000003 Rmu_sc0000376.1_g000035 Rmu_sc0000420.1_g000009 Rmu_sc0000493.1_g000019 Rmu_sc0000498.1_g000044 Rmu_sc0000540.1_g000015 Rmu_sc0000554.1_g000031 Rmu_sc0000577.1_g000004 Rmu_sc0000647.1_g000007 Rmu_sc0000703.1_g000002 Rmu_sc0000776.1_g000025 Rmu_sc0000924.1_g000044 Rmu_sc0000940.1_g000034 Rmu_sc0000940.1_g000036 Rmu_sc0000990.1_g000014 Rmu_sc0001004.1_g000018 Rmu_sc0001027.1_g000014 Rmu_sc0001059.1_g000004 Rmu_sc0001089.1_g000021 Rmu_sc0001118.1_g000013 Rmu_sc0001141.1_g000024 Rmu_sc0001154.1_g000002 Rmu_sc0001179.1_g000023 Rmu_sc0001230.1_g000014 Rmu_sc0001298.1_g000042 Rmu_sc0001306.1_g000030 Rmu_sc0001306.1_g000036 Rmu_sc0001341.1_g000007 Rmu_sc0001386.1_g000013 Rmu_sc0001461.1_g000019 Rmu_sc0001461.1_g000047 Rmu_sc0001476.1_g000013 Rmu_sc0001516.1_g000032 Rmu_sc0001780.1_g000007 Rmu_sc0001793.1_g000005 Rmu_sc0001911.1_g000013 Rmu_sc0001962.1_g000011 Rmu_sc0001986.1_g000004 Rmu_sc0002061.1_g000021 Rmu_sc0002119.1_g000024 Rmu_sc0002194.1_g000021 Rmu_sc0002284.1_g000019 Rmu_sc0002316.1_g000014 Rmu_sc0002322.1_g000006 Rmu_sc0002351.1_g000107 Rmu_sc0002387.1_g000008 Rmu_sc0002389.1_g000029 Rmu_sc0002507.1_g000001 Rmu_sc0002589.1_g000038 Rmu_sc0002638.1_g000041 Rmu_sc0002656.1_g000007 Rmu_sc0002882.1_g000030 Rmu_sc0002927.1_g000034 Rmu_sc0003024.1_g000020 Rmu_sc0003032.1_g000027 Rmu_sc0003069.1_g000025 Rmu_sc0003268.1_g000002 Rmu_sc0003296.1_g000007 Rmu_sc0003363.1_g000073 Rmu_sc0003527.1_g000017 Rmu_sc0003638.1_g000007 Rmu_sc0003669.1_g000007 Rmu_sc0003882.1_g000021 Rmu_sc0003941.1_g000004 Rmu_sc0003979.1_g000007 Rmu_sc0003983.1_g000007 Rmu_sc0003989.1_g000017 Rmu_sc0004016.1_g000003 Rmu_sc0004020.1_g000025 Rmu_sc0004094.1_g000016 Rmu_sc0004135.1_g000002 Rmu_sc0004154.1_g000014 Rmu_sc0004316.1_g000002 Rmu_sc0004316.1_g000015 Rmu_sc0004321.1_g000013 Rmu_sc0004467.1_g000005 Rmu_sc0004517.1_g000007 Rmu_sc0004642.1_g000012 Rmu_sc0004729.1_g000024 Rmu_sc0004757.1_g000018 Rmu_sc0004788.1_g000003 Rmu_sc0004835.1_g000026 Rmu_sc0004889.1_g000019 Rmu_sc0004991.1_g000009 Rmu_sc0005045.1_g000004 Rmu_sc0005079.1_g000004 Rmu_sc0005083.1_g000008 Rmu_sc0005170.1_g000002 Rmu_sc0005190.1_g000009 Rmu_sc0005217.1_g000010 Rmu_sc0005234.1_g000011 Rmu_sc0005608.1_g000016 Rmu_sc0005802.1_g000029 Rmu_sc0005810.1_g000006 Rmu_sc0005904.1_g000006 Rmu_sc0005967.1_g000012 Rmu_sc0006028.1_g000027 Rmu_sc0006059.1_g000040 Rmu_sc0006423.1_g000002 Rmu_sc0006467.1_g000001 Rmu_sc0006470.1_g000004 Rmu_sc0006598.1_g000003 Rmu_sc0006599.1_g000004 Rmu_sc0006632.1_g000021 Rmu_sc0006707.1_g000008 Rmu_sc0006791.1_g000008 Rmu_sc0006835.1_g000016 Rmu_sc0007100.1_g000002 Rmu_sc0007115.1_g000009 Rmu_sc0007362.1_g000012 Rmu_sc0007461.1_g000004 Rmu_sc0007474.1_g000001 Rmu_sc0007681.1_g000011 Rmu_sc0007697.1_g000003 Rmu_sc0007704.1_g000001 Rmu_sc0007722.1_g000016 Rmu_sc0007843.1_g000001 Rmu_sc0007856.1_g000009 Rmu_sc0008328.1_g000007 Rmu_sc0008780.1_g000005 Rmu_sc0009185.1_g000011 Rmu_sc0009599.1_g000021 Rmu_sc0009881.1_g000002 Rmu_sc0009891.1_g000002 Rmu_sc0010357.1_g000003 Rmu_sc0010781.1_g000005 Rmu_sc0011133.1_g000005 Rmu_sc0012334.1_g000001 Rmu_sc0012569.1_g000015 Rmu_sc0012984.1_g000001 Rmu_sc0013508.1_g000001 Rmu_sc0013550.1_g000005 Rmu_sc0013730.1_g000001 Rmu_sc0013945.1_g000001 Rmu_sc0013945.1_g000003 Rmu_sc0014005.1_g000005 Rmu_sc0014111.1_g000009 Rmu_sc0014111.1_g000010 Rmu_sc0014203.1_g000025 Rmu_sc0014839.1_g000002 Rmu_sc0015410.1_g000001 Rmu_sc0015513.1_g000003 Rmu_sc0015791.1_g000008 Rmu_sc0016657.1_g000004 Rmu_sc0017187.1_g000002 Rmu_sc0017400.1_g000001 Rmu_sc0017895.1_g000006 Rmu_sc0018221.1_g000008 Rmu_sc0018825.1_g000002 Rmu_sc0019047.1_g000001 Rmu_sc0019077.1_g000001 Rmu_sc0019171.1_g000001 Rmu_sc0019299.1_g000002 Rmu_sc0020342.1_g000008 Rmu_sc0020688.1_g000002 Rmu_sc0020688.1_g000003 Rmu_sc0021871.1_g000012 Rmu_sc0022925.1_g000001 Rmu_sc0023965.1_g000005 Rmu_sc0024968.1_g000001 Rmu_sc0024969.1_g000001 Rmu_sc0025035.1_g000002 Rmu_sc0025167.1_g000005 Rmu_sc0025567.1_g000001 Rmu_sc0026096.1_g000001 Rmu_sc0026586.1_g000001 Rmu_sc0028358.1_g000002 Rmu_sc0032171.1_g000001 Rmu_sc0034632.1_g000001 Rmu_sc0034633.1_g000001 Rmu_sc0035481.1_g000001 Rmu_sc0036303.1_g000001 Rmu_sc0039774.1_g000001 Rmu_sc0040023.1_g000002 Rmu_sc0040790.1_g000001 Rmu_sc0041574.1_g000001 Rmu_sc0042768.1_g000003 Rmu_ssc0000038.1_g000016 Rmu_ssc0000062.1_g000035 Rmu_ssc0000083.1_g000009 Rmu_ssc0000093.1_g000006 Rmu_ssc0000112.1_g000023 Rmu_ssc0000155.1_g000007 Rmu_ssc0000171.1_g000017 Rmu_ssc0000196.1_g000017 Rmu_ssc0000257.1_g000027 Rmu_ssc0000323.1_g000023 Rmu_ssc0000440.1_g000011 Rmu_ssc0000454.1_g000021 Rmu_ssc0000473.1_g000011
rosa_roxburghii Rroxscaffold_1G00014010 Rroxscaffold_1G00039470 Rroxscaffold_1G00045350 Rroxscaffold_2G00082440 Rroxscaffold_2G00096630 Rroxscaffold_2G00100560 Rroxscaffold_2G00102600 Rroxscaffold_2G00117720 Rroxscaffold_2G00120390 Rroxscaffold_2G00126010 Rroxscaffold_3G00220680 Rroxscaffold_3G00241760 Rroxscaffold_4G00309670 Rroxscaffold_4G00312380 Rroxscaffold_5G00339950 Rroxscaffold_5G00361980 Rroxscaffold_5G00370500 Rroxscaffold_5G00376480 Rroxscaffold_5G00384070 Rroxscaffold_6G00393690 Rroxscaffold_6G00396520 Rroxscaffold_6G00396850 Rroxscaffold_6G00404790 Rroxscaffold_7G00177690 Rroxscaffold_7G00178170 Rroxscaffold_7G00194330 Rroxscaffold_7G00197090 Rroxscaffold_9G00437910
rosa_rugosa Rorug01G0010100 Rorug01G0035300 Rorug01G0038600 Rorug01G0038700 Rorug01G0050300 Rorug01G0143800.1 Rorug01G0211700 Rorug01G0266600 Rorug01G0268800 Rorug01G0301200 Rorug02G0139800 Rorug02G0247100 Rorug02G0247100 Rorug02G0276800 Rorug02G0283300 Rorug02G0289800 Rorug02G0326700 Rorug02G0368100 Rorug02G0427000 Rorug02G0439100 Rorug02G0611200 Rorug02G0626600 Rorug03G0049100 Rorug03G0108000 Rorug03G0118600 Rorug03G0174300.1 Rorug03G0182300 Rorug03G0189800 Rorug03G0207000 Rorug03G0220700 Rorug03G0229400 Rorug03G0253700 Rorug03G0276500 Rorug03G0283300.1 Rorug03G0283500 Rorug03G0283600 Rorug03G0299600 Rorug04G0052200 Rorug04G0052300 Rorug04G0115800 Rorug04G0159700 Rorug04G0170900 Rorug04G0178100 Rorug04G0250800 Rorug04G0317200 Rorug04G0409500 Rorug05G0022500 Rorug05G0134900 Rorug05G0144800 Rorug05G0158200 Rorug05G0168300 Rorug05G0168400 Rorug05G0168600 Rorug05G0229800 Rorug05G0259100 Rorug05G0285700 Rorug05G0294600 Rorug05G0306400 Rorug05G0335300 Rorug05G0390100 Rorug05G0392900 Rorug05G0407100 Rorug05G0416600 Rorug05G0536900 Rorug05G0550300 Rorug06G0040900 Rorug06G0042800 Rorug06G0093000 Rorug06G0110700 Rorug06G0115600 Rorug06G0205700 Rorug07G0016900.1 Rorug07G0017000 Rorug07G0095200 Rorug07G0106400 Rorug07G0116400 Rorug07G0127300 Rorug07G0151100 Rorug07G0151200 Rorug07G0178200 Rorug07G0224300 Rorug07G0224400 Rorug07G0226400 Rorug07G0258200 Rorug07G0328000 RorugPtG0002700.1
rosa_samantha Rh1BG231600 Rh1BG235500 Rh1DG259300 Rh2AG044200 Rh2AG095600 Rh2AG164800 Rh2AG361400 Rh2AG370600 Rh2AG487800 Rh2AG620400 Rh2BG171900 Rh2BG244600 Rh2BG500300 Rh2CG189500 Rh2CG317600 Rh2CG374400 Rh2CG474300 Rh2DG170300 Rh2DG374800 Rh2DG511500 Rh3AG273400 Rh3AG331300 Rh3CG203900 Rh3CG222200 Rh3CG253800 Rh3CG269900 Rh3DG073800 Rh3DG208100 Rh3DG224000 Rh3DG265900 Rh4AG217200 Rh4BG076000 Rh4BG113200 Rh4BG240700 Rh4BG414300 Rh4CG266600 Rh4CG307600 Rh5BG088500 Rh5BG469000 Rh5CG284400 Rh5CG491200 Rh5CG557400 Rh5DG399000 Rh6AG457400 Rh6BG339800 Rh6BG443700 Rh6CG115400 Rh6CG471500 Rh6DG390100 Rh6DG457900 Rh7AG372100 Rh7AG429800 Rh7AG484600 Rh7BG176400 Rh7BG233900 Rh7BG244400 Rh7BG279800 Rh7BG285100 Rh7CG172200 Rh7CG390500 Rh7CG502600 Rh7CG518200 Rh7DG252500 Rh7DG294200 Rh7DG376400 Rh7DG390100
rosa_wichuraiana Rw0G001650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 690
AbsI CCTCGAGG 1 cut(s) 1352
Acc36I ACCTGC 1 cut(s) 963
AccBSI CCGCTC 1 cut(s) 1345
AccI GTMKAC 1 cut(s) 1225
AccII CGCG 1 cut(s) 11
AciI CCGC 2 cut(s) 737, 1343
AclWI GGATC 4 cut(s) 76, 263, 276, 530
AcsI RAATTY 3 cut(s) 224, 915, 1734
AcuI CTGAAG 3 cut(s) 518, 1233, 1251
AcyI GRCGYC 1 cut(s) 687
AfaI GTAC 8 cut(s) 24, 110, 297, 322, 651, 1294, 1449, 1564
AfeI AGCGCT 1 cut(s) 503
AfiI CCNNNNNNNGG 7 cut(s) 433, 592, 799, 991, 1327, 1354, 1420
AgsI TTSAA 9 cut(s) 548, 613, 634, 746, 797, 1204, 1339, 1361, 1427
AjnI CCWGG 1 cut(s) 1413
AjuI GAANNNNNNNTTGG 2 cut(s) 1531, 1563
AluBI AGCT 7 cut(s) 19, 104, 578, 911, 1208, 1250, 1312
AluI AGCT 7 cut(s) 19, 104, 578, 911, 1208, 1250, 1312
Alw21I GWGCWC 1 cut(s) 1047
Alw26I GTCTC 4 cut(s) 409, 1029, 1470, 1670
AlwI GGATC 4 cut(s) 76, 263, 276, 530
Ama87I CYCGRG 1 cut(s) 1352
Aor51HI AGCGCT 1 cut(s) 503
AoxI GGCC 2 cut(s) 1501, 1616
ApeKI GCWGC 3 cut(s) 16, 101, 387
ApoI RAATTY 3 cut(s) 224, 915, 1734
AspLEI GCGC 4 cut(s) 11, 147, 379, 504
AspS9I GGNCC 1 cut(s) 620
AsuC2I CCSGG 1 cut(s) 901
AsuHPI GGTGA 4 cut(s) 481, 1161, 1277, 1381
AsuNHI GCTAGC 1 cut(s) 383
AvaI CYCGRG 1 cut(s) 1352
AvaII GGWCC 1 cut(s) 620
BamHI GGATCC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 1221
Bbv12I GWGCWC 1 cut(s) 1047
BbvCI CCTCAGC 1 cut(s) 68
BbvI GCAGC 3 cut(s) 28, 113, 399
BccI CCATC 3 cut(s) 659, 1077, 1180
BceAI ACGGC 2 cut(s) 1488, 1603
BciT130I CCWGG 1 cut(s) 1415
BcnI CCSGG 1 cut(s) 901
BcoDI GTCTC 4 cut(s) 409, 1029, 1470, 1670
BfaI CTAG 9 cut(s) 279, 384, 575, 783, 1040, 1139, 1407, 1560, 1707
BfmI CTRYAG 1 cut(s) 653
BfoI RGCGCY 2 cut(s) 380, 505
BfuAI ACCTGC 1 cut(s) 963
BisI GCNGC 4 cut(s) 17, 102, 388, 737
BlsI GCNGC 4 cut(s) 18, 103, 389, 738
BmcAI AGTACT 1 cut(s) 322
Bme1390I CCNGG 2 cut(s) 901, 1415
Bme18I GGWCC 1 cut(s) 620
BmeT110I CYCGRG 1 cut(s) 1352
BmgT120I GGNCC 1 cut(s) 620
BmiI GGNNCC 2 cut(s) 270, 1412
BmrFI CCNGG 2 cut(s) 901, 1415
BmsI GCATC 7 cut(s) 377, 729, 905, 1071, 1132, 1368, 1657
BmtI GCTAGC 1 cut(s) 387
BoxI GACNNNNGTC 2 cut(s) 297, 1272
BpiI GAAGAC 1 cut(s) 1221
BpmI CTGGAG 1 cut(s) 216
Bpu10I CCTNAGC 2 cut(s) 68, 1251
BpuEI CTTGAG 4 cut(s) 860, 1095, 1179, 1298
BpuMI CCSGG 1 cut(s) 901
Bsa29I ATCGAT 2 cut(s) 44, 244
BsaAI YACGTR 2 cut(s) 112, 1010
BsaHI GRCGYC 1 cut(s) 687
BsaI GGTCTC 2 cut(s) 1029, 1470
BsaJI CCNNGG 4 cut(s) 623, 900, 990, 1414
BsaWI WCCGGW 1 cut(s) 1327
BsaXI ACNNNNNCTCC 8 cut(s) 1285, 1315, 1332, 1362, 1448, 1478, 1563, 1593
Bsc4I CCNNNNNNNGG 7 cut(s) 433, 592, 799, 991, 1327, 1354, 1420
Bse1I ACTGG 5 cut(s) 34, 170, 199, 804, 1392
BseBI CCWGG 1 cut(s) 1415
BseCI ATCGAT 2 cut(s) 44, 244
BseDI CCNNGG 4 cut(s) 623, 900, 990, 1414
BseGI GGATG 7 cut(s) 460, 482, 720, 808, 896, 1524, 1639
BseLI CCNNNNNNNGG 7 cut(s) 433, 592, 799, 991, 1327, 1354, 1420
BseMII CTCAG 8 cut(s) 59, 96, 170, 278, 331, 523, 578, 1041
BseNI ACTGG 5 cut(s) 34, 170, 199, 804, 1392
BseRI GAGGAG 4 cut(s) 215, 295, 1337, 1340
BseXI GCAGC 3 cut(s) 28, 113, 399
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 1503, 1618
BshVI ATCGAT 2 cut(s) 44, 244
BsiHKAI GWGCWC 1 cut(s) 1047
BsiHKCI CYCGRG 1 cut(s) 1352
BsiSI CCGG 2 cut(s) 900, 1328
BsiWI CGTACG 1 cut(s) 295
BslI CCNNNNNNNGG 7 cut(s) 433, 592, 799, 991, 1327, 1354, 1420
BsmAI GTCTC 4 cut(s) 409, 1029, 1470, 1670
BsmI GAATGC 1 cut(s) 1138
BsnI GGCC 2 cut(s) 1503, 1618
Bso31I GGTCTC 2 cut(s) 1029, 1470
BsoBI CYCGRG 1 cut(s) 1352
Bsp1286I GDGCHC 1 cut(s) 1047
Bsp143I GATC 6 cut(s) 81, 241, 268, 313, 493, 522
Bsp19I CCATGG 1 cut(s) 623
BspACI CCGC 2 cut(s) 737, 1343
BspANI GGCC 2 cut(s) 1503, 1618
BspCNI CTCAG 8 cut(s) 60, 97, 169, 279, 330, 522, 579, 1042
BspDI ATCGAT 2 cut(s) 44, 244
BspFNI CGCG 1 cut(s) 11
BspHI TCATGA 1 cut(s) 850
BspLI GGNNCC 2 cut(s) 270, 1412
BspMI ACCTGC 1 cut(s) 963
BspOI GCTAGC 1 cut(s) 387
BspPI GGATC 4 cut(s) 76, 263, 276, 530
BspQI GCTCTTC 1 cut(s) 741
BspTNI GGTCTC 2 cut(s) 1029, 1470
BsrBI CCGCTC 1 cut(s) 1345
BsrI ACTGG 5 cut(s) 34, 170, 199, 804, 1392
BssECI CCNNGG 4 cut(s) 623, 900, 990, 1414
BssMI GATC 6 cut(s) 81, 241, 268, 313, 493, 522
BssNAI GTATAC 1 cut(s) 1226
BssNI GRCGYC 1 cut(s) 687
BssT1I CCWWGG 2 cut(s) 623, 990
Bst1107I GTATAC 1 cut(s) 1226
Bst2UI CCWGG 1 cut(s) 1415
Bst6I CTCTTC 6 cut(s) 361, 741, 986, 1053, 1486, 1601
BstACI GRCGYC 1 cut(s) 687
BstBAI YACGTR 2 cut(s) 112, 1010
BstC8I GCNNGC 6 cut(s) 375, 381, 385, 1000, 1086, 1147
BstDSI CCRYGG 1 cut(s) 623
BstENI CCTNNNNNAGG 2 cut(s) 590, 1352
BstF5I GGATG 7 cut(s) 460, 482, 720, 808, 896, 1524, 1639
BstFNI CGCG 1 cut(s) 11
BstH2I RGCGCY 2 cut(s) 380, 505
BstHHI GCGC 4 cut(s) 11, 147, 379, 504
BstKTI GATC 6 cut(s) 84, 244, 271, 316, 496, 525
BstMAI GTCTC 4 cut(s) 409, 1029, 1470, 1670
BstMBI GATC 6 cut(s) 81, 241, 268, 313, 493, 522
BstMWI GCNNNNNNNGC 6 cut(s) 64, 98, 288, 374, 779, 1142
BstNI CCWGG 1 cut(s) 1415
BstNSI RCATGY 1 cut(s) 1149
BstPAI GACNNNNGTC 2 cut(s) 297, 1272
BstSCI CCNGG 2 cut(s) 899, 1413
BstSFI CTRYAG 1 cut(s) 653
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 28, 113, 399
BstV2I GAAGAC 1 cut(s) 1221
BstX2I RGATCY 3 cut(s) 81, 268, 522
BstYI RGATCY 3 cut(s) 81, 268, 522
BstZ17I GTATAC 1 cut(s) 1226
Bsu15I ATCGAT 2 cut(s) 44, 244
BsuRI GGCC 2 cut(s) 1503, 1618
BsuTUI ATCGAT 2 cut(s) 44, 244
BtgI CCRYGG 1 cut(s) 623
BtgZI GCGATG 2 cut(s) 354, 405
BtsCI GGATG 7 cut(s) 460, 482, 720, 808, 896, 1524, 1639
BtsI GCAGTG 1 cut(s) 1095
BtsIMutI CAGTG 2 cut(s) 284, 1095
BveI ACCTGC 1 cut(s) 963
Cac8I GCNNGC 6 cut(s) 375, 381, 385, 1000, 1086, 1147
CciI TCATGA 1 cut(s) 850
CfoI GCGC 4 cut(s) 11, 147, 379, 504
Cfr13I GGNCC 1 cut(s) 620
ClaI ATCGAT 2 cut(s) 44, 244
Csp6I GTAC 8 cut(s) 23, 109, 296, 321, 650, 1293, 1448, 1563
CviAII CATG 6 cut(s) 624, 733, 757, 851, 1028, 1146
CviQI GTAC 8 cut(s) 23, 109, 296, 321, 650, 1293, 1448, 1563
DpnI GATC 6 cut(s) 83, 243, 270, 315, 495, 524
DpnII GATC 6 cut(s) 81, 241, 268, 313, 493, 522
Eam1104I CTCTTC 6 cut(s) 361, 741, 986, 1053, 1486, 1601
EarI CTCTTC 6 cut(s) 361, 741, 986, 1053, 1486, 1601
Eco130I CCWWGG 2 cut(s) 623, 990
Eco31I GGTCTC 2 cut(s) 1029, 1470
Eco32I GATATC 1 cut(s) 856
Eco47I GGWCC 1 cut(s) 620
Eco47III AGCGCT 1 cut(s) 503
Eco57I CTGAAG 3 cut(s) 518, 1233, 1251
Eco88I CYCGRG 1 cut(s) 1352
EcoNI CCTNNNNNAGG 2 cut(s) 590, 1352
EcoRII CCWGG 1 cut(s) 1413
EcoRV GATATC 1 cut(s) 856
EcoT14I CCWWGG 2 cut(s) 623, 990
EcoT22I ATGCAT 1 cut(s) 1147
ErhI CCWWGG 2 cut(s) 623, 990
FaeI CATG 6 cut(s) 627, 736, 760, 854, 1031, 1149
FalI AAGNNNNNCTT 2 cut(s) 1531, 1563
FatI CATG 6 cut(s) 623, 732, 756, 850, 1027, 1145
FblI GTMKAC 1 cut(s) 1225
Fnu4HI GCNGC 4 cut(s) 17, 102, 388, 737
FokI GGATG 7 cut(s) 447, 469, 707, 815, 883, 1511, 1626
Fsp4HI GCNGC 4 cut(s) 17, 102, 388, 737
FspBI CTAG 9 cut(s) 279, 384, 575, 783, 1040, 1139, 1407, 1560, 1707
GlaI GCGC 4 cut(s) 10, 146, 378, 503
GluI GCNGC 4 cut(s) 17, 102, 388, 737
GsuI CTGGAG 1 cut(s) 216
HaeII RGCGCY 2 cut(s) 380, 505
HaeIII GGCC 2 cut(s) 1503, 1618
HapII CCGG 2 cut(s) 900, 1328
HhaI GCGC 4 cut(s) 11, 147, 379, 504
Hin1I GRCGYC 1 cut(s) 687
Hin1II CATG 6 cut(s) 627, 736, 760, 854, 1031, 1149
Hin6I GCGC 4 cut(s) 9, 145, 377, 502
HinP1I GCGC 4 cut(s) 9, 145, 377, 502
HincII GTYRAC 2 cut(s) 220, 1277
HindII GTYRAC 2 cut(s) 220, 1277
HinfI GANTC 8 cut(s) 212, 423, 544, 630, 697, 820, 955, 1093
HpaII CCGG 2 cut(s) 900, 1328
HphI GGTGA 4 cut(s) 481, 1161, 1277, 1381
Hpy166II GTNNAC 4 cut(s) 220, 1226, 1277, 1389
Hpy188I TCNGA 6 cut(s) 81, 238, 259, 498, 696, 1051
Hpy188III TCNNGA 5 cut(s) 548, 851, 877, 1139, 1211
Hpy8I GTNNAC 4 cut(s) 220, 1226, 1277, 1389
Hpy99I CGWCG 5 cut(s) 16, 296, 303, 347, 692
HpyAV CCTTC 8 cut(s) 27, 319, 426, 526, 607, 1493, 1608, 1651
HpyCH4IV ACGT 6 cut(s) 111, 294, 298, 345, 687, 1009
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 98, 288, 374, 779, 1142
HpySE526I ACGT 6 cut(s) 111, 294, 298, 345, 687, 1009
Hsp92I GRCGYC 1 cut(s) 687
Hsp92II CATG 6 cut(s) 627, 736, 760, 854, 1031, 1149
HspAI GCGC 4 cut(s) 9, 145, 377, 502
Kzo9I GATC 6 cut(s) 81, 241, 268, 313, 493, 522
LguI GCTCTTC 1 cut(s) 741
LmnI GCTCC 3 cut(s) 308, 1213, 1350
Lsp1109I GCAGC 3 cut(s) 28, 113, 399
LweI GCATC 7 cut(s) 377, 729, 905, 1071, 1132, 1368, 1657
MaeI CTAG 9 cut(s) 279, 384, 575, 783, 1040, 1139, 1407, 1560, 1707
MaeII ACGT 6 cut(s) 111, 294, 298, 345, 687, 1009
MaeIII GTNAC 5 cut(s) 670, 975, 1167, 1265, 1660
MalI GATC 6 cut(s) 83, 243, 270, 315, 495, 524
MbiI CCGCTC 1 cut(s) 1345
MboI GATC 6 cut(s) 81, 241, 268, 313, 493, 522
MflI RGATCY 3 cut(s) 81, 268, 522
MhlI GDGCHC 1 cut(s) 1047
MluCI AATT 4 cut(s) 224, 809, 915, 1734
MlyI GAGTC 1 cut(s) 691
MmeI TCCRAC 2 cut(s) 360, 451
Mph1103I ATGCAT 1 cut(s) 1147
MseI TTAA 4 cut(s) 488, 540, 1719, 1738
MspA1I CMGCKG 3 cut(s) 19, 104, 739
MspI CCGG 2 cut(s) 900, 1328
MspR9I CCNGG 2 cut(s) 901, 1415
Mva1269I GAATGC 1 cut(s) 1138
MvaI CCWGG 1 cut(s) 1415
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 6 cut(s) 64, 98, 288, 374, 779, 1142
NciI CCSGG 1 cut(s) 901
NcoI CCATGG 1 cut(s) 623
NdeII GATC 6 cut(s) 81, 241, 268, 313, 493, 522
NheI GCTAGC 1 cut(s) 383
NlaIII CATG 6 cut(s) 627, 736, 760, 854, 1031, 1149
NlaIV GGNNCC 2 cut(s) 270, 1412
NmeAIII GCCGAG 1 cut(s) 84
NmuCI GTSAC 3 cut(s) 975, 1167, 1265
NsiI ATGCAT 1 cut(s) 1147
NspI RCATGY 1 cut(s) 1149
PaeI GCATGC 1 cut(s) 1149
PaeR7I CTCGAG 1 cut(s) 1352
PagI TCATGA 1 cut(s) 850
PciSI GCTCTTC 1 cut(s) 741
PctI GAATGC 1 cut(s) 1138
PfeI GAWTC 7 cut(s) 212, 423, 544, 630, 820, 955, 1093
Pfl23II CGTACG 1 cut(s) 295
PflFI GACNNNGTC 1 cut(s) 347
PkrI GCNGC 4 cut(s) 18, 103, 389, 738
PleI GAGTC 1 cut(s) 691
PpsI GAGTC 1 cut(s) 691
Ppu21I YACGTR 2 cut(s) 112, 1010
PshAI GACNNNNGTC 2 cut(s) 297, 1272
Psp6I CCWGG 1 cut(s) 1413
PspGI CCWGG 1 cut(s) 1413
PspLI CGTACG 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 270, 1412
PspPI GGNCC 1 cut(s) 620
PspXI VCTCGAGB 1 cut(s) 1352
PsuI RGATCY 3 cut(s) 81, 268, 522
PsyI GACNNNGTC 1 cut(s) 347
PvuII CAGCTG 2 cut(s) 19, 104
RsaI GTAC 8 cut(s) 24, 110, 297, 322, 651, 1294, 1449, 1564
RsaNI GTAC 8 cut(s) 23, 109, 296, 321, 650, 1293, 1448, 1563
SapI GCTCTTC 1 cut(s) 741
SaqAI TTAA 4 cut(s) 488, 540, 1719, 1738
SatI GCNGC 4 cut(s) 17, 102, 388, 737
Sau3AI GATC 6 cut(s) 81, 241, 268, 313, 493, 522
Sau96I GGNCC 1 cut(s) 620
ScaI AGTACT 1 cut(s) 322
SchI GAGTC 1 cut(s) 691
ScrFI CCNGG 2 cut(s) 901, 1415
SduI GDGCHC 1 cut(s) 1047
SfaNI GCATC 7 cut(s) 377, 729, 905, 1071, 1132, 1368, 1657
SfcI CTRYAG 1 cut(s) 653
Sfr274I CTCGAG 1 cut(s) 1352
SinI GGWCC 1 cut(s) 620
SlaI CTCGAG 1 cut(s) 1352
SmlI CTYRAG 5 cut(s) 875, 1110, 1194, 1313, 1352
SmoI CTYRAG 5 cut(s) 875, 1110, 1194, 1313, 1352
SphI GCATGC 1 cut(s) 1149
Sse9I AATT 4 cut(s) 224, 809, 915, 1734
SsiI CCGC 2 cut(s) 737, 1343
SspI AATATT 4 cut(s) 769, 967, 1441, 1556
SspMI CTAG 9 cut(s) 279, 384, 575, 783, 1040, 1139, 1407, 1560, 1707
StyD4I CCNGG 2 cut(s) 899, 1413
StyI CCWWGG 2 cut(s) 623, 990
TaiI ACGT 6 cut(s) 114, 297, 301, 348, 690, 1012
TaqI TCGA 9 cut(s) 44, 244, 312, 342, 582, 1103, 1353, 1537, 1652
TasI AATT 4 cut(s) 224, 809, 915, 1734
TatI WGTACW 2 cut(s) 320, 649
TauI GCSGC 1 cut(s) 739
TfiI GAWTC 7 cut(s) 212, 423, 544, 630, 820, 955, 1093
Tru1I TTAA 4 cut(s) 488, 540, 1719, 1738
Tru9I TTAA 4 cut(s) 488, 540, 1719, 1738
TscAI CASTG 2 cut(s) 291, 1095
TseFI GTSAC 3 cut(s) 975, 1167, 1265
TseI GCWGC 3 cut(s) 16, 101, 387
Tsp45I GTSAC 3 cut(s) 975, 1167, 1265
TspDTI ATGAA 4 cut(s) 65, 131, 200, 1044
TspGWI ACGGA 2 cut(s) 40, 224
TspRI CASTG 2 cut(s) 291, 1095
Tth111I GACNNNGTC 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 620
XagI CCTNNNNNAGG 2 cut(s) 590, 1352
XapI RAATTY 3 cut(s) 224, 915, 1734
XbaI TCTAGA 1 cut(s) 1138
XceI RCATGY 1 cut(s) 1149
XcmI CCANNNNNNNNNTGG 2 cut(s) 1458, 1573
XhoI CTCGAG 1 cut(s) 1352
XmiI GTMKAC 1 cut(s) 1225
XspI CTAG 9 cut(s) 279, 384, 575, 783, 1040, 1139, 1407, 1560, 1707
ZraI GACGTC 1 cut(s) 688
ZrmI AGTACT 1 cut(s) 322
Zsp2I ATGCAT 1 cut(s) 1147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.