Domain of unknown function (DUF4283)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ribosomal_60s | PF00428 | 17 - 113 | 4.2e-26 | 60s Acidic ribosomal protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 268 |
| Acc36I | ACCTGC | 1 cut(s) | 268 |
| AccII | CGCG | 2 cut(s) | 17, 227 |
| AciI | CCGC | 8 cut(s) | 15, 39, 57, 207, 210, 218, 225, 243 |
| AcuI | CTGAAG | 2 cut(s) | 89, 313 |
| AfaI | GTAC | 1 cut(s) | 20 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 203 |
| AgsI | TTSAA | 1 cut(s) | 130 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 70 |
| AluBI | AGCT | 3 cut(s) | 95, 184, 236 |
| AluI | AGCT | 3 cut(s) | 95, 184, 236 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 239, 260 |
| AoxI | GGCC | 1 cut(s) | 99 |
| ApeKI | GCWGC | 6 cut(s) | 233, 236, 251, 254, 263, 266 |
| AspS9I | GGNCC | 1 cut(s) | 64 |
| AsuHPI | GGTGA | 1 cut(s) | 145 |
| AvaII | GGWCC | 1 cut(s) | 64 |
| BaeGI | GKGCMC | 1 cut(s) | 198 |
| BbvCI | CCTCAGC | 1 cut(s) | 96 |
| BbvI | GCAGC | 6 cut(s) | 223, 238, 245, 250, 253, 266 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 146, 180 |
| BfmI | CTRYAG | 2 cut(s) | 231, 252 |
| BfuAI | ACCTGC | 1 cut(s) | 268 |
| BlpI | GCTNAGC | 1 cut(s) | 270 |
| Bme18I | GGWCC | 1 cut(s) | 64 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 70 |
| BmgT120I | GGNCC | 1 cut(s) | 64 |
| BmsI | GCATC | 1 cut(s) | 176 |
| Bpu10I | CCTNAGC | 1 cut(s) | 96 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 270 |
| BpuEI | CTTGAG | 1 cut(s) | 122 |
| BsaJI | CCNNGG | 2 cut(s) | 60, 87 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 204, 234 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 203 |
| Bse3DI | GCAATG | 1 cut(s) | 162 |
| BseDI | CCNNGG | 2 cut(s) | 60, 87 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 203 |
| BseMI | GCAATG | 1 cut(s) | 162 |
| BseMII | CTCAG | 2 cut(s) | 87, 261 |
| BseRI | GAGGAG | 1 cut(s) | 299 |
| BseSI | GKGCMC | 1 cut(s) | 198 |
| BseXI | GCAGC | 6 cut(s) | 223, 238, 245, 250, 253, 266 |
| Bsh1236I | CGCG | 2 cut(s) | 17, 227 |
| BshFI | GGCC | 1 cut(s) | 101 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 203 |
| BsnI | GGCC | 1 cut(s) | 101 |
| Bsp1286I | GDGCHC | 1 cut(s) | 198 |
| Bsp143I | GATC | 1 cut(s) | 159 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 270 |
| BspACI | CCGC | 8 cut(s) | 15, 39, 57, 207, 210, 218, 225, 243 |
| BspANI | GGCC | 1 cut(s) | 101 |
| BspCNI | CTCAG | 2 cut(s) | 88, 262 |
| BspFNI | CGCG | 2 cut(s) | 17, 227 |
| BspMAI | CTGCAG | 2 cut(s) | 235, 256 |
| BspMI | ACCTGC | 1 cut(s) | 268 |
| BsrDI | GCAATG | 1 cut(s) | 162 |
| BssECI | CCNNGG | 2 cut(s) | 60, 87 |
| BssMI | GATC | 1 cut(s) | 159 |
| BssT1I | CCWWGG | 1 cut(s) | 60 |
| Bst6I | CTCTTC | 2 cut(s) | 291, 300 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 260, 263 |
| BstC8I | GCNNGC | 4 cut(s) | 27, 49, 186, 241 |
| BstDEI | CTNAG | 2 cut(s) | 96, 270 |
| BstDSI | CCRYGG | 1 cut(s) | 87 |
| BstFNI | CGCG | 2 cut(s) | 17, 227 |
| BstKTI | GATC | 1 cut(s) | 162 |
| BstMBI | GATC | 1 cut(s) | 159 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 48, 224, 230, 233, 260, 263 |
| BstSFI | CTRYAG | 2 cut(s) | 231, 252 |
| BstSLI | GKGCMC | 1 cut(s) | 198 |
| BstUI | CGCG | 2 cut(s) | 17, 227 |
| BstV1I | GCAGC | 6 cut(s) | 223, 238, 245, 250, 253, 266 |
| BsuRI | GGCC | 1 cut(s) | 101 |
| BtgI | CCRYGG | 1 cut(s) | 87 |
| BveI | ACCTGC | 1 cut(s) | 268 |
| Cac8I | GCNNGC | 4 cut(s) | 27, 49, 186, 241 |
| CaiI | CAGNNNCTG | 2 cut(s) | 239, 260 |
| Cfr13I | GGNCC | 1 cut(s) | 64 |
| CseI | GACGC | 1 cut(s) | 216 |
| Csp6I | GTAC | 1 cut(s) | 19 |
| CviAII | CATG | 1 cut(s) | 322 |
| CviJI | RGCY | 8 cut(s) | 51, 95, 101, 184, 188, 236, 327, 333 |
| CviKI_1 | RGCY | 8 cut(s) | 51, 95, 101, 184, 188, 236, 327, 333 |
| CviQI | GTAC | 1 cut(s) | 19 |
| DdeI | CTNAG | 2 cut(s) | 96, 270 |
| DpnI | GATC | 1 cut(s) | 161 |
| DpnII | GATC | 1 cut(s) | 159 |
| DriI | GACNNNNNGTC | 1 cut(s) | 70 |
| Eam1104I | CTCTTC | 2 cut(s) | 291, 300 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 70 |
| EarI | CTCTTC | 2 cut(s) | 291, 300 |
| EciI | GGCGGA | 2 cut(s) | 46, 225 |
| Eco130I | CCWWGG | 1 cut(s) | 60 |
| Eco32I | GATATC | 1 cut(s) | 151 |
| Eco47I | GGWCC | 1 cut(s) | 64 |
| Eco57I | CTGAAG | 2 cut(s) | 89, 313 |
| EcoO109I | RGGNCCY | 1 cut(s) | 64 |
| EcoRV | GATATC | 1 cut(s) | 151 |
| EcoT14I | CCWWGG | 1 cut(s) | 60 |
| ErhI | CCWWGG | 1 cut(s) | 60 |
| FaeI | CATG | 1 cut(s) | 325 |
| FaiI | YATR | 1 cut(s) | 323 |
| FatI | CATG | 1 cut(s) | 321 |
| HaeIII | GGCC | 1 cut(s) | 101 |
| HgaI | GACGC | 1 cut(s) | 216 |
| Hin1II | CATG | 1 cut(s) | 325 |
| HinfI | GANTC | 1 cut(s) | 308 |
| HphI | GGTGA | 1 cut(s) | 145 |
| Hpy188I | TCNGA | 1 cut(s) | 313 |
| Hpy188III | TCNNGA | 1 cut(s) | 171 |
| HpyAV | CCTTC | 6 cut(s) | 124, 139, 168, 274, 283, 295 |
| HpyCH4V | TGCA | 3 cut(s) | 167, 233, 254 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 48, 224, 230, 233, 260, 263 |
| HpyF3I | CTNAG | 2 cut(s) | 96, 270 |
| Hsp92II | CATG | 1 cut(s) | 325 |
| Kzo9I | GATC | 1 cut(s) | 159 |
| LmnI | GCTCC | 1 cut(s) | 92 |
| LpnPI | CCDG | 8 cut(s) | 61, 80, 97, 156, 170, 186, 225, 273 |
| Lsp1109I | GCAGC | 6 cut(s) | 223, 238, 245, 250, 253, 266 |
| LweI | GCATC | 1 cut(s) | 176 |
| MalI | GATC | 1 cut(s) | 161 |
| MboI | GATC | 1 cut(s) | 159 |
| MboII | GAAGA | 3 cut(s) | 289, 308, 317 |
| MhlI | GDGCHC | 1 cut(s) | 198 |
| MlyI | GAGTC | 1 cut(s) | 317 |
| MnlI | CCTC | 6 cut(s) | 64, 91, 94, 208, 277, 344 |
| MspA1I | CMGCKG | 1 cut(s) | 236 |
| MvnI | CGCG | 2 cut(s) | 17, 227 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 48, 224, 230, 233, 260, 263 |
| NdeII | GATC | 1 cut(s) | 159 |
| NlaIII | CATG | 1 cut(s) | 325 |
| NmeAIII | GCCGAG | 1 cut(s) | 127 |
| PaqCI | CACCTGC | 1 cut(s) | 268 |
| PleI | GAGTC | 1 cut(s) | 316 |
| PpsI | GAGTC | 1 cut(s) | 316 |
| PpuMI | RGGWCCY | 1 cut(s) | 64 |
| Psp5II | RGGWCCY | 1 cut(s) | 64 |
| PspPI | GGNCC | 1 cut(s) | 64 |
| PspPPI | RGGWCCY | 1 cut(s) | 64 |
| PstI | CTGCAG | 2 cut(s) | 235, 256 |
| PstNI | CAGNNNCTG | 2 cut(s) | 239, 260 |
| PvuII | CAGCTG | 1 cut(s) | 236 |
| RsaI | GTAC | 1 cut(s) | 20 |
| RsaNI | GTAC | 1 cut(s) | 19 |
| Sau3AI | GATC | 1 cut(s) | 159 |
| Sau96I | GGNCC | 1 cut(s) | 64 |
| SchI | GAGTC | 1 cut(s) | 317 |
| SduI | GDGCHC | 1 cut(s) | 198 |
| SetI | ASST | 7 cut(s) | 9, 69, 97, 186, 238, 262, 294 |
| SfaNI | GCATC | 1 cut(s) | 176 |
| SfcI | CTRYAG | 2 cut(s) | 231, 252 |
| SinI | GGWCC | 1 cut(s) | 64 |
| SmlI | CTYRAG | 1 cut(s) | 137 |
| SmoI | CTYRAG | 1 cut(s) | 137 |
| SsiI | CCGC | 8 cut(s) | 15, 39, 57, 207, 210, 218, 225, 243 |
| StyI | CCWWGG | 1 cut(s) | 60 |
| TauI | GCSGC | 4 cut(s) | 17, 42, 210, 227 |
| TseI | GCWGC | 6 cut(s) | 233, 236, 251, 254, 263, 266 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 2 cut(s) | 76, 181 |
| VpaK11BI | GGWCC | 1 cut(s) | 64 |