Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 18 |
| AccIII | TCCGGA | 1 cut(s) | 205 |
| AciI | CCGC | 1 cut(s) | 263 |
| AcsI | RAATTY | 1 cut(s) | 943 |
| AfaI | GTAC | 4 cut(s) | 83, 465, 774, 787 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 196, 253, 315, 638, 824 |
| AflIII | ACRYGT | 1 cut(s) | 859 |
| AgeI | ACCGGT | 1 cut(s) | 613 |
| AgsI | TTSAA | 2 cut(s) | 869, 949 |
| AjnI | CCWGG | 2 cut(s) | 352, 840 |
| AluBI | AGCT | 3 cut(s) | 447, 740, 851 |
| AluI | AGCT | 3 cut(s) | 447, 740, 851 |
| Alw26I | GTCTC | 2 cut(s) | 492, 551 |
| Aor13HI | TCCGGA | 1 cut(s) | 205 |
| AoxI | GGCC | 2 cut(s) | 317, 564 |
| ApeKI | GCWGC | 3 cut(s) | 224, 265, 580 |
| ApoI | RAATTY | 1 cut(s) | 943 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 233, 265 |
| AsiGI | ACCGGT | 1 cut(s) | 613 |
| AspLEI | GCGC | 2 cut(s) | 817, 987 |
| AspS9I | GGNCC | 3 cut(s) | 74, 169, 565 |
| AsuC2I | CCSGG | 1 cut(s) | 296 |
| AsuHPI | GGTGA | 2 cut(s) | 251, 683 |
| AvaII | GGWCC | 2 cut(s) | 74, 169 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 777, 810 |
| BbvI | GCAGC | 3 cut(s) | 211, 252, 592 |
| BccI | CCATC | 6 cut(s) | 113, 121, 428, 454, 662, 922 |
| BciT130I | CCWGG | 2 cut(s) | 354, 842 |
| BcnI | CCSGG | 1 cut(s) | 296 |
| BcoDI | GTCTC | 2 cut(s) | 492, 551 |
| BfaI | CTAG | 3 cut(s) | 5, 303, 491 |
| BfmI | CTRYAG | 1 cut(s) | 578 |
| BfoI | RGCGCY | 1 cut(s) | 988 |
| BfuAI | ACCTGC | 1 cut(s) | 18 |
| BisI | GCNGC | 4 cut(s) | 225, 263, 266, 581 |
| BlpI | GCTNAGC | 1 cut(s) | 591 |
| BlsI | GCNGC | 4 cut(s) | 226, 264, 267, 582 |
| Bme1390I | CCNGG | 3 cut(s) | 296, 354, 842 |
| Bme18I | GGWCC | 2 cut(s) | 74, 169 |
| BmgT120I | GGNCC | 3 cut(s) | 74, 169, 565 |
| BmiI | GGNNCC | 3 cut(s) | 170, 204, 567 |
| BmrFI | CCNGG | 3 cut(s) | 296, 354, 842 |
| BmsI | GCATC | 2 cut(s) | 211, 708 |
| BpmI | CTGGAG | 2 cut(s) | 300, 573 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 591 |
| BpuEI | CTTGAG | 2 cut(s) | 25, 515 |
| BpuMI | CCSGG | 1 cut(s) | 296 |
| BsaBI | GATNNNNATC | 1 cut(s) | 150 |
| BsaJI | CCNNGG | 3 cut(s) | 77, 352, 840 |
| BsaWI | WCCGGW | 2 cut(s) | 205, 613 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 963, 993 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 196, 253, 315, 638, 824 |
| Bse118I | RCCGGY | 3 cut(s) | 613, 721, 817 |
| Bse1I | ACTGG | 1 cut(s) | 283 |
| Bse8I | GATNNNNATC | 1 cut(s) | 150 |
| BseAI | TCCGGA | 1 cut(s) | 205 |
| BseBI | CCWGG | 2 cut(s) | 354, 842 |
| BseDI | CCNNGG | 3 cut(s) | 77, 352, 840 |
| BseGI | GGATG | 3 cut(s) | 226, 726, 912 |
| BseJI | GATNNNNATC | 1 cut(s) | 150 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 196, 253, 315, 638, 824 |
| BseNI | ACTGG | 1 cut(s) | 283 |
| BseXI | GCAGC | 3 cut(s) | 211, 252, 592 |
| BsgI | GTGCAG | 1 cut(s) | 128 |
| BshFI | GGCC | 2 cut(s) | 319, 566 |
| BshTI | ACCGGT | 1 cut(s) | 613 |
| BsiSI | CCGG | 5 cut(s) | 206, 295, 614, 722, 818 |
| BslFI | GGGAC | 2 cut(s) | 556, 740 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 196, 253, 315, 638, 824 |
| BsmAI | GTCTC | 2 cut(s) | 492, 551 |
| BsmFI | GGGAC | 2 cut(s) | 556, 740 |
| BsmI | GAATGC | 1 cut(s) | 340 |
| BsnI | GGCC | 2 cut(s) | 319, 566 |
| Bsp13I | TCCGGA | 1 cut(s) | 205 |
| Bsp143I | GATC | 3 cut(s) | 36, 48, 313 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 591 |
| Bsp19I | CCATGG | 1 cut(s) | 77 |
| BspACI | CCGC | 1 cut(s) | 263 |
| BspANI | GGCC | 2 cut(s) | 319, 566 |
| BspEI | TCCGGA | 1 cut(s) | 205 |
| BspLI | GGNNCC | 3 cut(s) | 170, 204, 567 |
| BspMAI | CTGCAG | 1 cut(s) | 582 |
| BspMI | ACCTGC | 1 cut(s) | 18 |
| BsrFI | RCCGGY | 3 cut(s) | 613, 721, 817 |
| BsrI | ACTGG | 1 cut(s) | 283 |
| BssAI | RCCGGY | 3 cut(s) | 613, 721, 817 |
| BssECI | CCNNGG | 3 cut(s) | 77, 352, 840 |
| BssMI | GATC | 3 cut(s) | 36, 48, 313 |
| BssT1I | CCWWGG | 1 cut(s) | 77 |
| Bst2UI | CCWGG | 2 cut(s) | 354, 842 |
| BstC8I | GCNNGC | 3 cut(s) | 456, 527, 781 |
| BstDEI | CTNAG | 1 cut(s) | 591 |
| BstDSI | CCRYGG | 1 cut(s) | 77 |
| BstF5I | GGATG | 3 cut(s) | 226, 726, 912 |
| BstH2I | RGCGCY | 1 cut(s) | 988 |
| BstHHI | GCGC | 2 cut(s) | 817, 987 |
| BstKTI | GATC | 3 cut(s) | 39, 51, 316 |
| BstMAI | GTCTC | 2 cut(s) | 492, 551 |
| BstMBI | GATC | 3 cut(s) | 36, 48, 313 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 10, 233, 500, 821 |
| BstNI | CCWGG | 2 cut(s) | 354, 842 |
| BstNSI | RCATGY | 2 cut(s) | 403, 863 |
| BstSCI | CCNGG | 3 cut(s) | 294, 352, 840 |
| BstSFI | CTRYAG | 1 cut(s) | 578 |
| BstV1I | GCAGC | 3 cut(s) | 211, 252, 592 |
| BsuRI | GGCC | 2 cut(s) | 319, 566 |
| BtgI | CCRYGG | 1 cut(s) | 77 |
| BtgZI | GCGATG | 1 cut(s) | 473 |
| BtsCI | GGATG | 3 cut(s) | 226, 726, 912 |
| BtsI | GCAGTG | 1 cut(s) | 575 |
| BtsIMutI | CAGTG | 1 cut(s) | 575 |
| BveI | ACCTGC | 1 cut(s) | 18 |
| Cac8I | GCNNGC | 3 cut(s) | 456, 527, 781 |
| CfoI | GCGC | 2 cut(s) | 817, 987 |
| Cfr10I | RCCGGY | 3 cut(s) | 613, 721, 817 |
| Cfr13I | GGNCC | 3 cut(s) | 74, 169, 565 |
| Csp6I | GTAC | 4 cut(s) | 82, 464, 773, 786 |
| CspAI | ACCGGT | 1 cut(s) | 613 |
| CviAII | CATG | 3 cut(s) | 78, 400, 860 |
| CviQI | GTAC | 4 cut(s) | 82, 464, 773, 786 |
| DdeI | CTNAG | 1 cut(s) | 591 |
| DpnI | GATC | 3 cut(s) | 38, 50, 315 |
| DpnII | GATC | 3 cut(s) | 36, 48, 313 |
| Eco130I | CCWWGG | 1 cut(s) | 77 |
| Eco47I | GGWCC | 2 cut(s) | 74, 169 |
| EcoRII | CCWGG | 2 cut(s) | 352, 840 |
| EcoT14I | CCWWGG | 1 cut(s) | 77 |
| ErhI | CCWWGG | 1 cut(s) | 77 |
| FaeI | CATG | 3 cut(s) | 81, 403, 863 |
| FaqI | GGGAC | 2 cut(s) | 556, 740 |
| FatI | CATG | 3 cut(s) | 77, 399, 859 |
| Fnu4HI | GCNGC | 4 cut(s) | 225, 263, 266, 581 |
| FokI | GGATG | 3 cut(s) | 233, 713, 919 |
| Fsp4HI | GCNGC | 4 cut(s) | 225, 263, 266, 581 |
| FspBI | CTAG | 3 cut(s) | 5, 303, 491 |
| GlaI | GCGC | 2 cut(s) | 816, 986 |
| GluI | GCNGC | 4 cut(s) | 225, 263, 266, 581 |
| GsuI | CTGGAG | 2 cut(s) | 300, 573 |
| HaeII | RGCGCY | 1 cut(s) | 988 |
| HaeIII | GGCC | 2 cut(s) | 319, 566 |
| HapII | CCGG | 5 cut(s) | 206, 295, 614, 722, 818 |
| HhaI | GCGC | 2 cut(s) | 817, 987 |
| Hin1II | CATG | 3 cut(s) | 81, 403, 863 |
| Hin6I | GCGC | 2 cut(s) | 815, 985 |
| HinP1I | GCGC | 2 cut(s) | 815, 985 |
| HinfI | GANTC | 7 cut(s) | 151, 184, 291, 388, 485, 598, 872 |
| HpaII | CCGG | 5 cut(s) | 206, 295, 614, 722, 818 |
| HphI | GGTGA | 2 cut(s) | 251, 683 |
| Hpy166II | GTNNAC | 3 cut(s) | 364, 537, 659 |
| Hpy188I | TCNGA | 4 cut(s) | 173, 603, 744, 877 |
| Hpy188III | TCNNGA | 4 cut(s) | 206, 303, 552, 869 |
| Hpy8I | GTNNAC | 3 cut(s) | 364, 537, 659 |
| HpyAV | CCTTC | 2 cut(s) | 642, 968 |
| HpyCH4V | TGCA | 5 cut(s) | 109, 338, 427, 580, 809 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 10, 233, 500, 821 |
| HpyF3I | CTNAG | 1 cut(s) | 591 |
| Hsp92II | CATG | 3 cut(s) | 81, 403, 863 |
| HspAI | GCGC | 2 cut(s) | 815, 985 |
| Kpn2I | TCCGGA | 1 cut(s) | 205 |
| Kzo9I | GATC | 3 cut(s) | 36, 48, 313 |
| LmnI | GCTCC | 1 cut(s) | 452 |
| Lsp1109I | GCAGC | 3 cut(s) | 211, 252, 592 |
| LweI | GCATC | 2 cut(s) | 211, 708 |
| MaeI | CTAG | 3 cut(s) | 5, 303, 491 |
| MaeIII | GTNAC | 1 cut(s) | 239 |
| MalI | GATC | 3 cut(s) | 38, 50, 315 |
| MboI | GATC | 3 cut(s) | 36, 48, 313 |
| MboII | GAAGA | 4 cut(s) | 80, 154, 193, 937 |
| MfeI | CAATTG | 2 cut(s) | 213, 798 |
| MluCI | AATT | 8 cut(s) | 141, 174, 194, 213, 415, 674, 798, 943 |
| MlyI | GAGTC | 3 cut(s) | 300, 494, 607 |
| MnlI | CCTC | 6 cut(s) | 65, 193, 211, 594, 632, 673 |
| MroI | TCCGGA | 1 cut(s) | 205 |
| MseI | TTAA | 2 cut(s) | 690, 896 |
| MslI | CAYNNNNRTG | 1 cut(s) | 432 |
| MspA1I | CMGCKG | 1 cut(s) | 265 |
| MspI | CCGG | 5 cut(s) | 206, 295, 614, 722, 818 |
| MspR9I | CCNGG | 3 cut(s) | 296, 354, 842 |
| MunI | CAATTG | 2 cut(s) | 213, 798 |
| Mva1269I | GAATGC | 1 cut(s) | 340 |
| MvaI | CCWGG | 2 cut(s) | 354, 842 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 10, 233, 500, 821 |
| NciI | CCSGG | 1 cut(s) | 296 |
| NcoI | CCATGG | 1 cut(s) | 77 |
| NdeII | GATC | 3 cut(s) | 36, 48, 313 |
| NlaIII | CATG | 3 cut(s) | 81, 403, 863 |
| NlaIV | GGNNCC | 3 cut(s) | 170, 204, 567 |
| NmeAIII | GCCGAG | 1 cut(s) | 621 |
| NmuCI | GTSAC | 1 cut(s) | 239 |
| NspI | RCATGY | 2 cut(s) | 403, 863 |
| PciI | ACATGT | 1 cut(s) | 859 |
| PctI | GAATGC | 1 cut(s) | 340 |
| PfeI | GAWTC | 4 cut(s) | 151, 184, 388, 872 |
| PinAI | ACCGGT | 1 cut(s) | 613 |
| PkrI | GCNGC | 4 cut(s) | 226, 264, 267, 582 |
| PleI | GAGTC | 3 cut(s) | 299, 493, 606 |
| PpsI | GAGTC | 3 cut(s) | 299, 493, 606 |
| PscI | ACATGT | 1 cut(s) | 859 |
| Psp6I | CCWGG | 2 cut(s) | 352, 840 |
| PspGI | CCWGG | 2 cut(s) | 352, 840 |
| PspN4I | GGNNCC | 3 cut(s) | 170, 204, 567 |
| PspPI | GGNCC | 3 cut(s) | 74, 169, 565 |
| PstI | CTGCAG | 1 cut(s) | 582 |
| RsaI | GTAC | 4 cut(s) | 83, 465, 774, 787 |
| RsaNI | GTAC | 4 cut(s) | 82, 464, 773, 786 |
| RseI | CAYNNNNRTG | 1 cut(s) | 432 |
| SaqAI | TTAA | 2 cut(s) | 690, 896 |
| SatI | GCNGC | 4 cut(s) | 225, 263, 266, 581 |
| Sau3AI | GATC | 3 cut(s) | 36, 48, 313 |
| Sau96I | GGNCC | 3 cut(s) | 74, 169, 565 |
| SchI | GAGTC | 3 cut(s) | 300, 494, 607 |
| ScrFI | CCNGG | 3 cut(s) | 296, 354, 842 |
| SetI | ASST | 9 cut(s) | 12, 204, 449, 634, 684, 742, 846, 853, 979 |
| SfaNI | GCATC | 2 cut(s) | 211, 708 |
| SfcI | CTRYAG | 1 cut(s) | 578 |
| SgrAI | CRCCGGYG | 1 cut(s) | 817 |
| SinI | GGWCC | 2 cut(s) | 74, 169 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 432 |
| SmlI | CTYRAG | 2 cut(s) | 40, 530 |
| SmoI | CTYRAG | 2 cut(s) | 40, 530 |
| Sse9I | AATT | 8 cut(s) | 141, 174, 194, 213, 415, 674, 798, 943 |
| SsiI | CCGC | 1 cut(s) | 263 |
| SspI | AATATT | 1 cut(s) | 889 |
| SspMI | CTAG | 3 cut(s) | 5, 303, 491 |
| StyD4I | CCNGG | 3 cut(s) | 294, 352, 840 |
| StyI | CCWWGG | 1 cut(s) | 77 |
| TaqI | TCGA | 3 cut(s) | 51, 135, 154 |
| TasI | AATT | 8 cut(s) | 141, 174, 194, 213, 415, 674, 798, 943 |
| TauI | GCSGC | 1 cut(s) | 265 |
| TfiI | GAWTC | 4 cut(s) | 151, 184, 388, 872 |
| Tru1I | TTAA | 2 cut(s) | 690, 896 |
| Tru9I | TTAA | 2 cut(s) | 690, 896 |
| TscAI | CASTG | 1 cut(s) | 582 |
| TseFI | GTSAC | 1 cut(s) | 239 |
| TseI | GCWGC | 3 cut(s) | 224, 265, 580 |
| Tsp45I | GTSAC | 1 cut(s) | 239 |
| TspDTI | ATGAA | 6 cut(s) | 153, 164, 313, 750, 870, 882 |
| TspRI | CASTG | 1 cut(s) | 582 |
| VpaK11BI | GGWCC | 2 cut(s) | 74, 169 |
| XapI | RAATTY | 1 cut(s) | 943 |
| XbaI | TCTAGA | 1 cut(s) | 302 |
| XceI | RCATGY | 2 cut(s) | 403, 863 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 457 |
| XspI | CTAG | 3 cut(s) | 5, 303, 491 |