ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 332 |
| Acc65I | GGTACC | 1 cut(s) | 791 |
| AccB1I | GGYRCC | 2 cut(s) | 586, 791 |
| AccBSI | CCGCTC | 1 cut(s) | 295 |
| AccII | CGCG | 1 cut(s) | 177 |
| AccIII | TCCGGA | 1 cut(s) | 970 |
| AciI | CCGC | 6 cut(s) | 9, 295, 425, 473, 702, 770 |
| AclI | AACGTT | 1 cut(s) | 244 |
| AclWI | GGATC | 2 cut(s) | 50, 345 |
| AcsI | RAATTY | 3 cut(s) | 320, 606, 1022 |
| AcuI | CTGAAG | 2 cut(s) | 450, 747 |
| AfaI | GTAC | 3 cut(s) | 793, 960, 1089 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 136, 583, 689, 761, 859 |
| AflIII | ACRYGT | 1 cut(s) | 72 |
| AgsI | TTSAA | 8 cut(s) | 232, 283, 488, 605, 623, 1097, 1152, 1195 |
| AjiI | CACGTC | 1 cut(s) | 203 |
| AjnI | CCWGG | 4 cut(s) | 589, 627, 975, 1309 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 850, 882 |
| AleI | CACNNNNGTG | 1 cut(s) | 467 |
| AluBI | AGCT | 3 cut(s) | 385, 866, 968 |
| AluI | AGCT | 3 cut(s) | 385, 866, 968 |
| Alw21I | GWGCWC | 1 cut(s) | 939 |
| Alw26I | GTCTC | 3 cut(s) | 151, 762, 1161 |
| Alw44I | GTGCAC | 1 cut(s) | 935 |
| AlwI | GGATC | 2 cut(s) | 50, 345 |
| Aor13HI | TCCGGA | 1 cut(s) | 970 |
| AoxI | GGCC | 1 cut(s) | 1062 |
| ApaLI | GTGCAC | 1 cut(s) | 935 |
| ApeKI | GCWGC | 4 cut(s) | 107, 224, 965, 1204 |
| ApoI | RAATTY | 3 cut(s) | 320, 606, 1022 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 808, 840 |
| Asp718I | GGTACC | 1 cut(s) | 791 |
| AspLEI | GCGC | 2 cut(s) | 179, 333 |
| AspS9I | GGNCC | 4 cut(s) | 265, 752, 843, 973 |
| AsuC2I | CCSGG | 2 cut(s) | 317, 1217 |
| AsuHPI | GGTGA | 2 cut(s) | 1124, 1133 |
| AsuII | TTCGAA | 1 cut(s) | 551 |
| AsuNHI | GCTAGC | 1 cut(s) | 125 |
| AvaII | GGWCC | 4 cut(s) | 265, 752, 843, 973 |
| BaeGI | GKGCMC | 1 cut(s) | 939 |
| BanI | GGYRCC | 2 cut(s) | 586, 791 |
| BanII | GRGCYC | 2 cut(s) | 301, 1058 |
| BbsI | GAAGAC | 1 cut(s) | 1310 |
| Bbv12I | GWGCWC | 1 cut(s) | 939 |
| BbvI | GCAGC | 4 cut(s) | 94, 211, 977, 1191 |
| BccI | CCATC | 3 cut(s) | 350, 782, 838 |
| BciT130I | CCWGG | 4 cut(s) | 591, 629, 977, 1311 |
| BclI | TGATCA | 2 cut(s) | 450, 643 |
| BcnI | CCSGG | 2 cut(s) | 317, 1217 |
| BcoDI | GTCTC | 3 cut(s) | 151, 762, 1161 |
| BfaI | CTAG | 3 cut(s) | 126, 209, 761 |
| BfmI | CTRYAG | 1 cut(s) | 838 |
| BglII | AGATCT | 2 cut(s) | 981, 1265 |
| BisI | GCNGC | 6 cut(s) | 9, 108, 225, 702, 966, 1205 |
| BlsI | GCNGC | 6 cut(s) | 10, 109, 226, 703, 967, 1206 |
| BmcAI | AGTACT | 1 cut(s) | 960 |
| Bme1390I | CCNGG | 6 cut(s) | 317, 591, 629, 977, 1217, 1311 |
| Bme18I | GGWCC | 4 cut(s) | 265, 752, 843, 973 |
| BmgBI | CACGTC | 1 cut(s) | 203 |
| BmgT120I | GGNCC | 4 cut(s) | 265, 752, 843, 973 |
| BmiI | GGNNCC | 5 cut(s) | 266, 300, 441, 588, 793 |
| BmrFI | CCNGG | 6 cut(s) | 317, 591, 629, 977, 1217, 1311 |
| BmsI | GCATC | 2 cut(s) | 119, 369 |
| BmtI | GCTAGC | 1 cut(s) | 129 |
| BoxI | GACNNNNGTC | 2 cut(s) | 39, 1128 |
| BpiI | GAAGAC | 1 cut(s) | 1310 |
| BpmI | CTGGAG | 3 cut(s) | 612, 836, 998 |
| Bpu14I | TTCGAA | 1 cut(s) | 551 |
| BpuEI | CTTGAG | 2 cut(s) | 133, 551 |
| BpuMI | CCSGG | 2 cut(s) | 317, 1217 |
| BsaJI | CCNNGG | 2 cut(s) | 1309, 1310 |
| BsaWI | WCCGGW | 1 cut(s) | 970 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 585, 615 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 136, 583, 689, 761, 859 |
| Bse118I | RCCGGY | 1 cut(s) | 220 |
| Bse1I | ACTGG | 4 cut(s) | 588, 1082, 1091, 1248 |
| Bse3DI | GCAATG | 1 cut(s) | 646 |
| BseAI | TCCGGA | 1 cut(s) | 970 |
| BseBI | CCWGG | 4 cut(s) | 591, 629, 977, 1311 |
| BseDI | CCNNGG | 2 cut(s) | 1309, 1310 |
| BseGI | GGATG | 2 cut(s) | 499, 1078 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 136, 583, 689, 761, 859 |
| BseMI | GCAATG | 1 cut(s) | 646 |
| BseMII | CTCAG | 1 cut(s) | 1035 |
| BseNI | ACTGG | 4 cut(s) | 588, 1082, 1091, 1248 |
| BseRI | GAGGAG | 1 cut(s) | 452 |
| BseSI | GKGCMC | 1 cut(s) | 939 |
| BseXI | GCAGC | 4 cut(s) | 94, 211, 977, 1191 |
| BseYI | CCCAGC | 1 cut(s) | 65 |
| BsgI | GTGCAG | 1 cut(s) | 833 |
| Bsh1236I | CGCG | 1 cut(s) | 177 |
| BshFI | GGCC | 1 cut(s) | 1064 |
| BshNI | GGYRCC | 2 cut(s) | 586, 791 |
| BsiHKAI | GWGCWC | 1 cut(s) | 939 |
| BsiSI | CCGG | 4 cut(s) | 221, 316, 971, 1217 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 136, 583, 689, 761, 859 |
| BsmAI | GTCTC | 3 cut(s) | 151, 762, 1161 |
| BsmBI | CGTCTC | 1 cut(s) | 762 |
| BsnI | GGCC | 1 cut(s) | 1064 |
| Bsp119I | TTCGAA | 1 cut(s) | 551 |
| Bsp1286I | GDGCHC | 3 cut(s) | 301, 939, 1058 |
| Bsp13I | TCCGGA | 1 cut(s) | 970 |
| Bsp143I | GATC | 7 cut(s) | 55, 235, 337, 450, 643, 981, 1265 |
| BspACI | CCGC | 6 cut(s) | 9, 295, 425, 473, 702, 770 |
| BspANI | GGCC | 1 cut(s) | 1064 |
| BspCNI | CTCAG | 1 cut(s) | 1036 |
| BspEI | TCCGGA | 1 cut(s) | 970 |
| BspFNI | CGCG | 1 cut(s) | 177 |
| BspHI | TCATGA | 1 cut(s) | 664 |
| BspLI | GGNNCC | 5 cut(s) | 266, 300, 441, 588, 793 |
| BspOI | GCTAGC | 1 cut(s) | 129 |
| BspPI | GGATC | 2 cut(s) | 50, 345 |
| BspT104I | TTCGAA | 1 cut(s) | 551 |
| BspT107I | GGYRCC | 2 cut(s) | 586, 791 |
| BsrBI | CCGCTC | 1 cut(s) | 295 |
| BsrDI | GCAATG | 1 cut(s) | 646 |
| BsrFI | RCCGGY | 1 cut(s) | 220 |
| BsrI | ACTGG | 4 cut(s) | 588, 1082, 1091, 1248 |
| BssAI | RCCGGY | 1 cut(s) | 220 |
| BssECI | CCNNGG | 2 cut(s) | 1309, 1310 |
| BssMI | GATC | 7 cut(s) | 55, 235, 337, 450, 643, 981, 1265 |
| Bst2UI | CCWGG | 4 cut(s) | 591, 629, 977, 1311 |
| Bst4CI | ACNGT | 3 cut(s) | 308, 391, 1200 |
| Bst6I | CTCTTC | 1 cut(s) | 401 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 116, 678, 962, 1234 |
| BstBI | TTCGAA | 1 cut(s) | 551 |
| BstC8I | GCNNGC | 3 cut(s) | 127, 297, 877 |
| BstDEI | CTNAG | 3 cut(s) | 413, 1044, 1068 |
| BstF5I | GGATG | 2 cut(s) | 499, 1078 |
| BstFNI | CGCG | 1 cut(s) | 177 |
| BstHHI | GCGC | 2 cut(s) | 179, 333 |
| BstKTI | GATC | 7 cut(s) | 58, 238, 340, 453, 646, 984, 1268 |
| BstMAI | GTCTC | 3 cut(s) | 151, 762, 1161 |
| BstMBI | GATC | 7 cut(s) | 55, 235, 337, 450, 643, 981, 1265 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 116, 678, 872, 911, 962, 1234 |
| BstNI | CCWGG | 4 cut(s) | 591, 629, 977, 1311 |
| BstNSI | RCATGY | 1 cut(s) | 76 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 39, 1128 |
| BstSCI | CCNGG | 6 cut(s) | 315, 589, 627, 975, 1215, 1309 |
| BstSFI | CTRYAG | 1 cut(s) | 838 |
| BstSLI | GKGCMC | 1 cut(s) | 939 |
| BstUI | CGCG | 1 cut(s) | 177 |
| BstV1I | GCAGC | 4 cut(s) | 94, 211, 977, 1191 |
| BstV2I | GAAGAC | 1 cut(s) | 1310 |
| BstX2I | RGATCY | 2 cut(s) | 981, 1265 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 922, 1270 |
| BstYI | RGATCY | 2 cut(s) | 981, 1265 |
| BsuRI | GGCC | 1 cut(s) | 1064 |
| BtrI | CACGTC | 1 cut(s) | 203 |
| BtsCI | GGATG | 2 cut(s) | 499, 1078 |
| BtsIMutI | CAGTG | 1 cut(s) | 474 |
| Cac8I | GCNNGC | 3 cut(s) | 127, 297, 877 |
| CciI | TCATGA | 1 cut(s) | 664 |
| CfoI | GCGC | 2 cut(s) | 179, 333 |
| Cfr10I | RCCGGY | 1 cut(s) | 220 |
| Cfr13I | GGNCC | 4 cut(s) | 265, 752, 843, 973 |
| CseI | GACGC | 2 cut(s) | 183, 1118 |
| CsiI | ACCWGGT | 1 cut(s) | 627 |
| Csp6I | GTAC | 3 cut(s) | 792, 959, 1088 |
| CviAII | CATG | 7 cut(s) | 73, 448, 533, 542, 665, 698, 1018 |
| CviQI | GTAC | 3 cut(s) | 792, 959, 1088 |
| DdeI | CTNAG | 3 cut(s) | 413, 1044, 1068 |
| DpnI | GATC | 7 cut(s) | 57, 237, 339, 452, 645, 983, 1267 |
| DpnII | GATC | 7 cut(s) | 55, 235, 337, 450, 643, 981, 1265 |
| Eam1104I | CTCTTC | 1 cut(s) | 401 |
| EarI | CTCTTC | 1 cut(s) | 401 |
| EciI | GGCGGA | 1 cut(s) | 414 |
| Eco147I | AGGCCT | 1 cut(s) | 1064 |
| Eco24I | GRGCYC | 2 cut(s) | 301, 1058 |
| Eco32I | GATATC | 1 cut(s) | 1213 |
| Eco47I | GGWCC | 4 cut(s) | 265, 752, 843, 973 |
| Eco57I | CTGAAG | 2 cut(s) | 450, 747 |
| EcoO109I | RGGNCCY | 2 cut(s) | 265, 843 |
| EcoRII | CCWGG | 4 cut(s) | 589, 627, 975, 1309 |
| EcoRV | GATATC | 1 cut(s) | 1213 |
| EcoT38I | GRGCYC | 2 cut(s) | 301, 1058 |
| Esp3I | CGTCTC | 1 cut(s) | 762 |
| FaeI | CATG | 7 cut(s) | 76, 451, 536, 545, 668, 701, 1021 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 173, 205, 448, 480 |
| FatI | CATG | 7 cut(s) | 72, 447, 532, 541, 664, 697, 1017 |
| FauI | CCCGC | 2 cut(s) | 288, 466 |
| FbaI | TGATCA | 2 cut(s) | 450, 643 |
| Fnu4HI | GCNGC | 6 cut(s) | 9, 108, 225, 702, 966, 1205 |
| FokI | GGATG | 2 cut(s) | 506, 1085 |
| FriOI | GRGCYC | 2 cut(s) | 301, 1058 |
| Fsp4HI | GCNGC | 6 cut(s) | 9, 108, 225, 702, 966, 1205 |
| FspBI | CTAG | 3 cut(s) | 126, 209, 761 |
| FspI | TGCGCA | 1 cut(s) | 332 |
| GlaI | GCGC | 2 cut(s) | 178, 332 |
| GluI | GCNGC | 6 cut(s) | 9, 108, 225, 702, 966, 1205 |
| GsaI | CCCAGC | 1 cut(s) | 69 |
| GsuI | CTGGAG | 3 cut(s) | 612, 836, 998 |
| HaeIII | GGCC | 1 cut(s) | 1064 |
| HapII | CCGG | 4 cut(s) | 221, 316, 971, 1217 |
| HgaI | GACGC | 2 cut(s) | 183, 1118 |
| HhaI | GCGC | 2 cut(s) | 179, 333 |
| Hin1II | CATG | 7 cut(s) | 76, 451, 536, 545, 668, 701, 1021 |
| Hin6I | GCGC | 2 cut(s) | 177, 331 |
| HinP1I | GCGC | 2 cut(s) | 177, 331 |
| HincII | GTYRAC | 1 cut(s) | 775 |
| HindII | GTYRAC | 1 cut(s) | 775 |
| HindIII | AAGCTT | 1 cut(s) | 864 |
| HinfI | GANTC | 3 cut(s) | 165, 286, 1174 |
| HpaI | GTTAAC | 1 cut(s) | 775 |
| HpaII | CCGG | 4 cut(s) | 221, 316, 971, 1217 |
| HphI | GGTGA | 2 cut(s) | 1124, 1133 |
| Hpy166II | GTNNAC | 3 cut(s) | 775, 937, 1245 |
| Hpy188I | TCNGA | 2 cut(s) | 240, 1045 |
| Hpy188III | TCNNGA | 7 cut(s) | 150, 283, 290, 485, 568, 665, 971 |
| Hpy8I | GTNNAC | 3 cut(s) | 775, 937, 1245 |
| Hpy99I | CGWCG | 2 cut(s) | 45, 177 |
| HpyAV | CCTTC | 4 cut(s) | 733, 922, 1027, 1158 |
| HpyCH4III | ACNGT | 3 cut(s) | 308, 391, 1200 |
| HpyCH4IV | ACGT | 2 cut(s) | 202, 244 |
| HpyCH4V | TGCA | 6 cut(s) | 110, 509, 651, 814, 937, 965 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 116, 678, 872, 911, 962, 1234 |
| HpyF3I | CTNAG | 3 cut(s) | 413, 1044, 1068 |
| HpySE526I | ACGT | 2 cut(s) | 202, 244 |
| Hsp92II | CATG | 7 cut(s) | 76, 451, 536, 545, 668, 701, 1021 |
| HspAI | GCGC | 2 cut(s) | 177, 331 |
| Kpn2I | TCCGGA | 1 cut(s) | 970 |
| KpnI | GGTACC | 1 cut(s) | 795 |
| Ksp22I | TGATCA | 2 cut(s) | 450, 643 |
| KspAI | GTTAAC | 1 cut(s) | 775 |
| Kzo9I | GATC | 7 cut(s) | 55, 235, 337, 450, 643, 981, 1265 |
| LmnI | GCTCC | 6 cut(s) | 292, 304, 439, 973, 1009, 1314 |
| Lsp1109I | GCAGC | 4 cut(s) | 94, 211, 977, 1191 |
| LweI | GCATC | 2 cut(s) | 119, 369 |
| MabI | ACCWGGT | 1 cut(s) | 627 |
| MaeI | CTAG | 3 cut(s) | 126, 209, 761 |
| MaeII | ACGT | 2 cut(s) | 202, 244 |
| MaeIII | GTNAC | 3 cut(s) | 91, 1121, 1130 |
| MalI | GATC | 7 cut(s) | 57, 237, 339, 452, 645, 983, 1267 |
| MbiI | CCGCTC | 1 cut(s) | 295 |
| MboI | GATC | 7 cut(s) | 55, 235, 337, 450, 643, 981, 1265 |
| MboII | GAAGA | 6 cut(s) | 226, 388, 391, 740, 981, 1315 |
| MflI | RGATCY | 2 cut(s) | 981, 1265 |
| MhlI | GDGCHC | 3 cut(s) | 301, 939, 1058 |
| MluCI | AATT | 6 cut(s) | 320, 488, 606, 652, 1022, 1187 |
| MmeI | TCCRAC | 1 cut(s) | 102 |
| MroI | TCCGGA | 1 cut(s) | 970 |
| MseI | TTAA | 1 cut(s) | 774 |
| MslI | CAYNNNNRTG | 2 cut(s) | 467, 920 |
| MspI | CCGG | 4 cut(s) | 221, 316, 971, 1217 |
| MspR9I | CCNGG | 6 cut(s) | 317, 591, 629, 977, 1217, 1311 |
| MvaI | CCWGG | 4 cut(s) | 591, 629, 977, 1311 |
| MvnI | CGCG | 1 cut(s) | 177 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 116, 678, 872, 911, 962, 1234 |
| NciI | CCSGG | 2 cut(s) | 317, 1217 |
| NdeII | GATC | 7 cut(s) | 55, 235, 337, 450, 643, 981, 1265 |
| NheI | GCTAGC | 1 cut(s) | 125 |
| NlaIII | CATG | 7 cut(s) | 76, 451, 536, 545, 668, 701, 1021 |
| NlaIV | GGNNCC | 5 cut(s) | 266, 300, 441, 588, 793 |
| NmeAIII | GCCGAG | 1 cut(s) | 155 |
| NmuCI | GTSAC | 2 cut(s) | 1121, 1130 |
| NsbI | TGCGCA | 1 cut(s) | 332 |
| NspI | RCATGY | 1 cut(s) | 76 |
| NspV | TTCGAA | 1 cut(s) | 551 |
| OliI | CACNNNNGTG | 1 cut(s) | 467 |
| PagI | TCATGA | 1 cut(s) | 664 |
| PasI | CCCWGGG | 1 cut(s) | 1310 |
| PceI | AGGCCT | 1 cut(s) | 1064 |
| PciI | ACATGT | 1 cut(s) | 72 |
| PfeI | GAWTC | 3 cut(s) | 165, 286, 1174 |
| PfoI | TCCNGGA | 1 cut(s) | 315 |
| PkrI | GCNGC | 6 cut(s) | 10, 109, 226, 703, 967, 1206 |
| PpuMI | RGGWCCY | 2 cut(s) | 265, 843 |
| PscI | ACATGT | 1 cut(s) | 72 |
| PshAI | GACNNNNGTC | 2 cut(s) | 39, 1128 |
| Psp1406I | AACGTT | 1 cut(s) | 244 |
| Psp5II | RGGWCCY | 2 cut(s) | 265, 843 |
| Psp6I | CCWGG | 4 cut(s) | 589, 627, 975, 1309 |
| PspFI | CCCAGC | 1 cut(s) | 65 |
| PspGI | CCWGG | 4 cut(s) | 589, 627, 975, 1309 |
| PspN4I | GGNNCC | 5 cut(s) | 266, 300, 441, 588, 793 |
| PspPI | GGNCC | 4 cut(s) | 265, 752, 843, 973 |
| PspPPI | RGGWCCY | 2 cut(s) | 265, 843 |
| PsuI | RGATCY | 2 cut(s) | 981, 1265 |
| RsaI | GTAC | 3 cut(s) | 793, 960, 1089 |
| RsaNI | GTAC | 3 cut(s) | 792, 959, 1088 |
| RseI | CAYNNNNRTG | 2 cut(s) | 467, 920 |
| SaqAI | TTAA | 1 cut(s) | 774 |
| SatI | GCNGC | 6 cut(s) | 9, 108, 225, 702, 966, 1205 |
| Sau3AI | GATC | 7 cut(s) | 55, 235, 337, 450, 643, 981, 1265 |
| Sau96I | GGNCC | 4 cut(s) | 265, 752, 843, 973 |
| ScaI | AGTACT | 1 cut(s) | 960 |
| ScrFI | CCNGG | 6 cut(s) | 317, 591, 629, 977, 1217, 1311 |
| SduI | GDGCHC | 3 cut(s) | 301, 939, 1058 |
| SexAI | ACCWGGT | 1 cut(s) | 627 |
| SfaNI | GCATC | 2 cut(s) | 119, 369 |
| SfcI | CTRYAG | 1 cut(s) | 838 |
| SfuI | TTCGAA | 1 cut(s) | 551 |
| SinI | GGWCC | 4 cut(s) | 265, 752, 843, 973 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 467, 920 |
| SmlI | CTYRAG | 2 cut(s) | 148, 566 |
| SmoI | CTYRAG | 2 cut(s) | 148, 566 |
| Sse9I | AATT | 6 cut(s) | 320, 488, 606, 652, 1022, 1187 |
| SseBI | AGGCCT | 1 cut(s) | 1064 |
| SsiI | CCGC | 6 cut(s) | 9, 295, 425, 473, 702, 770 |
| SspI | AATATT | 1 cut(s) | 421 |
| SspMI | CTAG | 3 cut(s) | 126, 209, 761 |
| StuI | AGGCCT | 1 cut(s) | 1064 |
| StyD4I | CCNGG | 6 cut(s) | 315, 589, 627, 975, 1215, 1309 |
| TaaI | ACNGT | 3 cut(s) | 308, 391, 1200 |
| TaiI | ACGT | 2 cut(s) | 205, 247 |
| TaqI | TCGA | 3 cut(s) | 158, 409, 551 |
| TasI | AATT | 6 cut(s) | 320, 488, 606, 652, 1022, 1187 |
| TatI | WGTACW | 1 cut(s) | 958 |
| TauI | GCSGC | 2 cut(s) | 11, 704 |
| TfiI | GAWTC | 3 cut(s) | 165, 286, 1174 |
| Tru1I | TTAA | 1 cut(s) | 774 |
| Tru9I | TTAA | 1 cut(s) | 774 |
| TscAI | CASTG | 1 cut(s) | 474 |
| TseFI | GTSAC | 2 cut(s) | 1121, 1130 |
| TseI | GCWGC | 4 cut(s) | 107, 224, 965, 1204 |
| Tsp45I | GTSAC | 2 cut(s) | 1121, 1130 |
| TspDTI | ATGAA | 3 cut(s) | 521, 600, 1089 |
| TspGWI | ACGGA | 3 cut(s) | 29, 733, 744 |
| TspRI | CASTG | 1 cut(s) | 474 |
| VneI | GTGCAC | 1 cut(s) | 935 |
| VpaK11BI | GGWCC | 4 cut(s) | 265, 752, 843, 973 |
| XapI | RAATTY | 3 cut(s) | 320, 606, 1022 |
| XceI | RCATGY | 1 cut(s) | 76 |
| XspI | CTAG | 3 cut(s) | 126, 209, 761 |
| ZrmI | AGTACT | 1 cut(s) | 960 |