ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 41 - 113 | 3.2e-11 | Domain of unknown function (DUF4283) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 446 |
| Acc36I | ACCTGC | 1 cut(s) | 446 |
| AccB1I | GGYRCC | 1 cut(s) | 313 |
| AciI | CCGC | 2 cut(s) | 103, 668 |
| AcoI | YGGCCR | 1 cut(s) | 54 |
| AcsI | RAATTY | 4 cut(s) | 189, 209, 490, 746 |
| AcuI | CTGAAG | 1 cut(s) | 656 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 52, 63 |
| AflII | CTTAAG | 1 cut(s) | 560 |
| AflIII | ACRYGT | 1 cut(s) | 469 |
| AgsI | TTSAA | 6 cut(s) | 221, 329, 437, 495, 551, 663 |
| AjiI | CACGTC | 1 cut(s) | 83 |
| AjnI | CCWGG | 1 cut(s) | 571 |
| AluBI | AGCT | 4 cut(s) | 565, 743, 811, 851 |
| AluI | AGCT | 4 cut(s) | 565, 743, 811, 851 |
| Alw26I | GTCTC | 2 cut(s) | 220, 413 |
| AoxI | GGCC | 2 cut(s) | 54, 292 |
| ApeKI | GCWGC | 5 cut(s) | 172, 443, 706, 811, 814 |
| ApoI | RAATTY | 4 cut(s) | 189, 209, 490, 746 |
| AseI | ATTAAT | 1 cut(s) | 363 |
| AspLEI | GCGC | 1 cut(s) | 198 |
| AspS9I | GGNCC | 2 cut(s) | 67, 293 |
| AsuHPI | GGTGA | 2 cut(s) | 142, 470 |
| AsuNHI | GCTAGC | 1 cut(s) | 739 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| AxyI | CCTNAGG | 1 cut(s) | 231 |
| BaeGI | GKGCMC | 1 cut(s) | 316 |
| BanI | GGYRCC | 1 cut(s) | 313 |
| BbvI | GCAGC | 5 cut(s) | 184, 455, 693, 798, 801 |
| BccI | CCATC | 4 cut(s) | 56, 197, 332, 782 |
| BceAI | ACGGC | 1 cut(s) | 90 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 164, 198 |
| BciT130I | CCWGG | 1 cut(s) | 573 |
| BcoDI | GTCTC | 2 cut(s) | 220, 413 |
| BfaI | CTAG | 3 cut(s) | 411, 740, 848 |
| BfrI | CTTAAG | 1 cut(s) | 560 |
| BfuAI | ACCTGC | 1 cut(s) | 446 |
| BisI | GCNGC | 6 cut(s) | 173, 444, 668, 707, 812, 815 |
| BlsI | GCNGC | 6 cut(s) | 174, 445, 669, 708, 813, 816 |
| Bme1390I | CCNGG | 1 cut(s) | 573 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgBI | CACGTC | 1 cut(s) | 83 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 293 |
| BmiI | GGNNCC | 7 cut(s) | 68, 94, 144, 315, 619, 715, 861 |
| BmrFI | CCNGG | 1 cut(s) | 573 |
| BmsI | GCATC | 1 cut(s) | 430 |
| BmtI | GCTAGC | 1 cut(s) | 743 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 84, 116 |
| BpuEI | CTTGAG | 1 cut(s) | 416 |
| BsaBI | GATNNNNATC | 2 cut(s) | 273, 480 |
| BsaI | GGTCTC | 1 cut(s) | 220 |
| BsaJI | CCNNGG | 1 cut(s) | 296 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 52, 63 |
| Bse118I | RCCGGY | 1 cut(s) | 56 |
| Bse1I | ACTGG | 5 cut(s) | 30, 57, 425, 738, 770 |
| Bse21I | CCTNAGG | 1 cut(s) | 231 |
| Bse8I | GATNNNNATC | 2 cut(s) | 273, 480 |
| BseBI | CCWGG | 1 cut(s) | 573 |
| BseDI | CCNNGG | 1 cut(s) | 296 |
| BseJI | GATNNNNATC | 2 cut(s) | 273, 480 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 52, 63 |
| BseMII | CTCAG | 1 cut(s) | 245 |
| BseNI | ACTGG | 5 cut(s) | 30, 57, 425, 738, 770 |
| BseSI | GKGCMC | 1 cut(s) | 316 |
| BseXI | GCAGC | 5 cut(s) | 184, 455, 693, 798, 801 |
| Bsh1285I | CGRYCG | 1 cut(s) | 89 |
| BshFI | GGCC | 2 cut(s) | 56, 294 |
| BshNI | GGYRCC | 1 cut(s) | 313 |
| BsiEI | CGRYCG | 1 cut(s) | 89 |
| BsiSI | CCGG | 1 cut(s) | 57 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 52, 63 |
| BsmAI | GTCTC | 2 cut(s) | 220, 413 |
| BsnI | GGCC | 2 cut(s) | 56, 294 |
| Bso31I | GGTCTC | 1 cut(s) | 220 |
| Bsp1286I | GDGCHC | 1 cut(s) | 316 |
| Bsp143I | GATC | 5 cut(s) | 86, 268, 475, 803, 844 |
| BspACI | CCGC | 2 cut(s) | 103, 668 |
| BspANI | GGCC | 2 cut(s) | 56, 294 |
| BspCNI | CTCAG | 1 cut(s) | 244 |
| BspLI | GGNNCC | 7 cut(s) | 68, 94, 144, 315, 619, 715, 861 |
| BspMI | ACCTGC | 1 cut(s) | 446 |
| BspOI | GCTAGC | 1 cut(s) | 743 |
| BspT107I | GGYRCC | 1 cut(s) | 313 |
| BspTI | CTTAAG | 1 cut(s) | 560 |
| BspTNI | GGTCTC | 1 cut(s) | 220 |
| BsrFI | RCCGGY | 1 cut(s) | 56 |
| BsrI | ACTGG | 5 cut(s) | 30, 57, 425, 738, 770 |
| BssAI | RCCGGY | 1 cut(s) | 56 |
| BssECI | CCNNGG | 1 cut(s) | 296 |
| BssMI | GATC | 5 cut(s) | 86, 268, 475, 803, 844 |
| Bst2UI | CCWGG | 1 cut(s) | 573 |
| Bst4CI | ACNGT | 1 cut(s) | 829 |
| Bst6I | CTCTTC | 1 cut(s) | 257 |
| BstAFI | CTTAAG | 1 cut(s) | 560 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 353, 452 |
| BstC8I | GCNNGC | 5 cut(s) | 58, 117, 345, 567, 741 |
| BstDEI | CTNAG | 1 cut(s) | 231 |
| BstDSI | CCRYGG | 1 cut(s) | 296 |
| BstHHI | GCGC | 1 cut(s) | 198 |
| BstKTI | GATC | 5 cut(s) | 89, 271, 478, 806, 847 |
| BstMAI | GTCTC | 2 cut(s) | 220, 413 |
| BstMBI | GATC | 5 cut(s) | 86, 268, 475, 803, 844 |
| BstMCI | CGRYCG | 1 cut(s) | 89 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 35, 353, 452, 646, 655, 664 |
| BstNI | CCWGG | 1 cut(s) | 573 |
| BstNSI | RCATGY | 1 cut(s) | 473 |
| BstSCI | CCNGG | 1 cut(s) | 571 |
| BstSLI | GKGCMC | 1 cut(s) | 316 |
| BstV1I | GCAGC | 5 cut(s) | 184, 455, 693, 798, 801 |
| Bsu36I | CCTNAGG | 1 cut(s) | 231 |
| BsuRI | GGCC | 2 cut(s) | 56, 294 |
| BtgI | CCRYGG | 1 cut(s) | 296 |
| BtgZI | GCGATG | 2 cut(s) | 10, 75 |
| BtrI | CACGTC | 1 cut(s) | 83 |
| BtsIMutI | CAGTG | 4 cut(s) | 50, 198, 432, 723 |
| BveI | ACCTGC | 1 cut(s) | 446 |
| Cac8I | GCNNGC | 5 cut(s) | 58, 117, 345, 567, 741 |
| CfoI | GCGC | 1 cut(s) | 198 |
| Cfr10I | RCCGGY | 1 cut(s) | 56 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 293 |
| CviAII | CATG | 4 cut(s) | 470, 524, 622, 794 |
| DdeI | CTNAG | 1 cut(s) | 231 |
| DpnI | GATC | 5 cut(s) | 88, 270, 477, 805, 846 |
| DpnII | GATC | 5 cut(s) | 86, 268, 475, 803, 844 |
| EaeI | YGGCCR | 1 cut(s) | 54 |
| Eam1104I | CTCTTC | 1 cut(s) | 257 |
| EarI | CTCTTC | 1 cut(s) | 257 |
| EciI | GGCGGA | 1 cut(s) | 92 |
| Eco31I | GGTCTC | 1 cut(s) | 220 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 1 cut(s) | 656 |
| Eco81I | CCTNAGG | 1 cut(s) | 231 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoRI | GAATTC | 1 cut(s) | 490 |
| EcoRII | CCWGG | 1 cut(s) | 571 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| FaeI | CATG | 4 cut(s) | 473, 527, 625, 797 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 108, 140 |
| FatI | CATG | 4 cut(s) | 469, 523, 621, 793 |
| Fnu4HI | GCNGC | 6 cut(s) | 173, 444, 668, 707, 812, 815 |
| Fsp4HI | GCNGC | 6 cut(s) | 173, 444, 668, 707, 812, 815 |
| FspBI | CTAG | 3 cut(s) | 411, 740, 848 |
| GlaI | GCGC | 1 cut(s) | 197 |
| GluI | GCNGC | 6 cut(s) | 173, 444, 668, 707, 812, 815 |
| HaeIII | GGCC | 2 cut(s) | 56, 294 |
| HapII | CCGG | 1 cut(s) | 57 |
| HhaI | GCGC | 1 cut(s) | 198 |
| Hin1II | CATG | 4 cut(s) | 473, 527, 625, 797 |
| Hin6I | GCGC | 1 cut(s) | 196 |
| HinP1I | GCGC | 1 cut(s) | 196 |
| HincII | GTYRAC | 1 cut(s) | 157 |
| HindII | GTYRAC | 1 cut(s) | 157 |
| HindIII | AAGCTT | 1 cut(s) | 563 |
| HinfI | GANTC | 3 cut(s) | 481, 607, 631 |
| HpaI | GTTAAC | 1 cut(s) | 157 |
| HpaII | CCGG | 1 cut(s) | 57 |
| HphI | GGTGA | 2 cut(s) | 142, 470 |
| Hpy166II | GTNNAC | 2 cut(s) | 157, 683 |
| Hpy188I | TCNGA | 5 cut(s) | 147, 480, 489, 636, 808 |
| Hpy188III | TCNNGA | 5 cut(s) | 90, 329, 530, 583, 697 |
| Hpy8I | GTNNAC | 2 cut(s) | 157, 683 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 87 |
| HpyAV | CCTTC | 3 cut(s) | 262, 636, 669 |
| HpyCH4III | ACNGT | 1 cut(s) | 829 |
| HpyCH4IV | ACGT | 1 cut(s) | 82 |
| HpyCH4V | TGCA | 9 cut(s) | 50, 164, 172, 347, 356, 370, 443, 455, 856 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 35, 353, 452, 646, 655, 664 |
| HpyF3I | CTNAG | 1 cut(s) | 231 |
| HpySE526I | ACGT | 1 cut(s) | 82 |
| Hsp92II | CATG | 4 cut(s) | 473, 527, 625, 797 |
| HspAI | GCGC | 1 cut(s) | 196 |
| KroI | GCCGGC | 1 cut(s) | 56 |
| KroNI | GCCGGC | 1 cut(s) | 58 |
| KspAI | GTTAAC | 1 cut(s) | 157 |
| Kzo9I | GATC | 5 cut(s) | 86, 268, 475, 803, 844 |
| LmnI | GCTCC | 4 cut(s) | 92, 148, 574, 617 |
| Lsp1109I | GCAGC | 5 cut(s) | 184, 455, 693, 798, 801 |
| LweI | GCATC | 1 cut(s) | 430 |
| MaeI | CTAG | 3 cut(s) | 411, 740, 848 |
| MaeII | ACGT | 1 cut(s) | 82 |
| MaeIII | GTNAC | 2 cut(s) | 107, 721 |
| MalI | GATC | 5 cut(s) | 88, 270, 477, 805, 846 |
| MboI | GATC | 5 cut(s) | 86, 268, 475, 803, 844 |
| MboII | GAAGA | 4 cut(s) | 274, 299, 449, 476 |
| MfeI | CAATTG | 2 cut(s) | 447, 687 |
| MhlI | GDGCHC | 1 cut(s) | 316 |
| MluCI | AATT | 8 cut(s) | 189, 209, 364, 447, 490, 687, 746, 757 |
| MmeI | TCCRAC | 1 cut(s) | 595 |
| MnlI | CCTC | 5 cut(s) | 147, 240, 284, 417, 496 |
| MroNI | GCCGGC | 1 cut(s) | 56 |
| MseI | TTAA | 6 cut(s) | 156, 213, 363, 561, 674, 871 |
| MspCI | CTTAAG | 1 cut(s) | 560 |
| MspI | CCGG | 1 cut(s) | 57 |
| MspR9I | CCNGG | 1 cut(s) | 573 |
| MunI | CAATTG | 2 cut(s) | 447, 687 |
| MvaI | CCWGG | 1 cut(s) | 573 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 35, 353, 452, 646, 655, 664 |
| NaeI | GCCGGC | 1 cut(s) | 58 |
| NdeII | GATC | 5 cut(s) | 86, 268, 475, 803, 844 |
| NgoMIV | GCCGGC | 1 cut(s) | 56 |
| NheI | GCTAGC | 1 cut(s) | 739 |
| NlaIII | CATG | 4 cut(s) | 473, 527, 625, 797 |
| NlaIV | GGNNCC | 7 cut(s) | 68, 94, 144, 315, 619, 715, 861 |
| NmuCI | GTSAC | 1 cut(s) | 721 |
| NspI | RCATGY | 1 cut(s) | 473 |
| PaqCI | CACCTGC | 1 cut(s) | 446 |
| PciI | ACATGT | 1 cut(s) | 469 |
| PdiI | GCCGGC | 1 cut(s) | 58 |
| PfeI | GAWTC | 3 cut(s) | 481, 607, 631 |
| PflFI | GACNNNGTC | 1 cut(s) | 20 |
| PfoI | TCCNGGA | 1 cut(s) | 571 |
| PkrI | GCNGC | 6 cut(s) | 174, 445, 669, 708, 813, 816 |
| Ple19I | CGATCG | 1 cut(s) | 89 |
| PpuMI | RGGWCCY | 1 cut(s) | 67 |
| PscI | ACATGT | 1 cut(s) | 469 |
| PshBI | ATTAAT | 1 cut(s) | 363 |
| Psp5II | RGGWCCY | 1 cut(s) | 67 |
| Psp6I | CCWGG | 1 cut(s) | 571 |
| PspGI | CCWGG | 1 cut(s) | 571 |
| PspN4I | GGNNCC | 7 cut(s) | 68, 94, 144, 315, 619, 715, 861 |
| PspPI | GGNCC | 2 cut(s) | 67, 293 |
| PspPPI | RGGWCCY | 1 cut(s) | 67 |
| PsyI | GACNNNGTC | 1 cut(s) | 20 |
| PvuI | CGATCG | 1 cut(s) | 89 |
| SaqAI | TTAA | 6 cut(s) | 156, 213, 363, 561, 674, 871 |
| SatI | GCNGC | 6 cut(s) | 173, 444, 668, 707, 812, 815 |
| Sau3AI | GATC | 5 cut(s) | 86, 268, 475, 803, 844 |
| Sau96I | GGNCC | 2 cut(s) | 67, 293 |
| ScrFI | CCNGG | 1 cut(s) | 573 |
| SduI | GDGCHC | 1 cut(s) | 316 |
| SfaNI | GCATC | 1 cut(s) | 430 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmlI | CTYRAG | 2 cut(s) | 395, 560 |
| SmoI | CTYRAG | 2 cut(s) | 395, 560 |
| Sse9I | AATT | 8 cut(s) | 189, 209, 364, 447, 490, 687, 746, 757 |
| SsiI | CCGC | 2 cut(s) | 103, 668 |
| SspMI | CTAG | 3 cut(s) | 411, 740, 848 |
| StyD4I | CCNGG | 1 cut(s) | 571 |
| TaaI | ACNGT | 1 cut(s) | 829 |
| TaiI | ACGT | 1 cut(s) | 85 |
| TaqI | TCGA | 6 cut(s) | 5, 15, 85, 255, 271, 629 |
| TasI | AATT | 8 cut(s) | 189, 209, 364, 447, 490, 687, 746, 757 |
| TauI | GCSGC | 1 cut(s) | 670 |
| TfiI | GAWTC | 3 cut(s) | 481, 607, 631 |
| Tru1I | TTAA | 6 cut(s) | 156, 213, 363, 561, 674, 871 |
| Tru9I | TTAA | 6 cut(s) | 156, 213, 363, 561, 674, 871 |
| TscAI | CASTG | 4 cut(s) | 57, 205, 432, 730 |
| TseFI | GTSAC | 1 cut(s) | 721 |
| TseI | GCWGC | 5 cut(s) | 172, 443, 706, 811, 814 |
| Tsp45I | GTSAC | 1 cut(s) | 721 |
| TspDTI | ATGAA | 2 cut(s) | 275, 532 |
| TspRI | CASTG | 4 cut(s) | 57, 205, 432, 730 |
| Tth111I | GACNNNGTC | 1 cut(s) | 20 |
| Vha464I | CTTAAG | 1 cut(s) | 560 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| VspI | ATTAAT | 1 cut(s) | 363 |
| XapI | RAATTY | 4 cut(s) | 189, 209, 490, 746 |
| XceI | RCATGY | 1 cut(s) | 473 |
| XspI | CTAG | 3 cut(s) | 411, 740, 848 |