Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 214 |
| AccII | CGCG | 1 cut(s) | 168 |
| AciI | CCGC | 9 cut(s) | 43, 98, 166, 168, 427, 437, 493, 557, 560 |
| AclI | AACGTT | 1 cut(s) | 235 |
| AclWI | GGATC | 1 cut(s) | 336 |
| AcoI | YGGCCR | 1 cut(s) | 434 |
| AcyI | GRCGYC | 1 cut(s) | 588 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 73, 265, 576 |
| AgsI | TTSAA | 2 cut(s) | 274, 367 |
| AjnI | CCWGG | 1 cut(s) | 602 |
| AluBI | AGCT | 3 cut(s) | 50, 196, 474 |
| AluI | AGCT | 3 cut(s) | 50, 196, 474 |
| Alw21I | GWGCWC | 1 cut(s) | 476 |
| Alw26I | GTCTC | 2 cut(s) | 484, 617 |
| AlwI | GGATC | 1 cut(s) | 336 |
| AoxI | GGCC | 3 cut(s) | 99, 287, 434 |
| ApeKI | GCWGC | 2 cut(s) | 62, 196 |
| AspLEI | GCGC | 1 cut(s) | 173 |
| AspS9I | GGNCC | 2 cut(s) | 226, 256 |
| AsuHPI | GGTGA | 2 cut(s) | 362, 440 |
| AvaII | GGWCC | 2 cut(s) | 226, 256 |
| BanI | GGYRCC | 1 cut(s) | 214 |
| BanII | GRGCYC | 1 cut(s) | 476 |
| Bbv12I | GWGCWC | 1 cut(s) | 476 |
| BbvI | GCAGC | 2 cut(s) | 49, 183 |
| BceAI | ACGGC | 2 cut(s) | 575, 596 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 68, 102, 367, 401 |
| BciT130I | CCWGG | 1 cut(s) | 604 |
| BcoDI | GTCTC | 2 cut(s) | 484, 617 |
| BfaI | CTAG | 4 cut(s) | 141, 188, 248, 456 |
| BglII | AGATCT | 1 cut(s) | 412 |
| BisI | GCNGC | 8 cut(s) | 63, 99, 166, 169, 197, 428, 437, 560 |
| BlsI | GCNGC | 8 cut(s) | 64, 100, 167, 170, 198, 429, 438, 561 |
| Bme1390I | CCNGG | 1 cut(s) | 604 |
| Bme18I | GGWCC | 2 cut(s) | 226, 256 |
| BmgT120I | GGNCC | 2 cut(s) | 226, 256 |
| BmiI | GGNNCC | 2 cut(s) | 216, 257 |
| BmrFI | CCNGG | 1 cut(s) | 604 |
| BmsI | GCATC | 2 cut(s) | 375, 448 |
| Bpu10I | CCTNAGC | 1 cut(s) | 112 |
| BpuEI | CTTGAG | 1 cut(s) | 281 |
| BsaAI | YACGTR | 1 cut(s) | 347 |
| BsaHI | GRCGYC | 1 cut(s) | 588 |
| BsaI | GGTCTC | 1 cut(s) | 617 |
| BsaJI | CCNNGG | 2 cut(s) | 72, 166 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 7, 37 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 73, 265, 576 |
| Bse118I | RCCGGY | 2 cut(s) | 211, 576 |
| Bse1I | ACTGG | 2 cut(s) | 302, 443 |
| Bse3DI | GCAATG | 1 cut(s) | 218 |
| BseBI | CCWGG | 1 cut(s) | 604 |
| BseDI | CCNNGG | 2 cut(s) | 72, 166 |
| BseGI | GGATG | 2 cut(s) | 10, 439 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 73, 265, 576 |
| BseMI | GCAATG | 1 cut(s) | 218 |
| BseMII | CTCAG | 2 cut(s) | 282, 489 |
| BseNI | ACTGG | 2 cut(s) | 302, 443 |
| BseRI | GAGGAG | 2 cut(s) | 476, 479 |
| BseX3I | CGGCCG | 1 cut(s) | 434 |
| BseXI | GCAGC | 2 cut(s) | 49, 183 |
| BseYI | CCCAGC | 1 cut(s) | 26 |
| BsgI | GTGCAG | 1 cut(s) | 177 |
| Bsh1236I | CGCG | 1 cut(s) | 168 |
| Bsh1285I | CGRYCG | 2 cut(s) | 381, 437 |
| BshFI | GGCC | 3 cut(s) | 101, 289, 436 |
| BshNI | GGYRCC | 1 cut(s) | 214 |
| BsiEI | CGRYCG | 2 cut(s) | 381, 437 |
| BsiHKAI | GWGCWC | 1 cut(s) | 476 |
| BsiSI | CCGG | 2 cut(s) | 212, 577 |
| BslFI | GGGAC | 2 cut(s) | 498, 536 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 73, 265, 576 |
| BsmAI | GTCTC | 2 cut(s) | 484, 617 |
| BsmFI | GGGAC | 2 cut(s) | 498, 536 |
| BsnI | GGCC | 3 cut(s) | 101, 289, 436 |
| Bso31I | GGTCTC | 1 cut(s) | 617 |
| Bsp1286I | GDGCHC | 1 cut(s) | 476 |
| Bsp143I | GATC | 4 cut(s) | 143, 328, 378, 412 |
| Bsp19I | CCATGG | 1 cut(s) | 72 |
| BspACI | CCGC | 9 cut(s) | 43, 98, 166, 168, 427, 437, 493, 557, 560 |
| BspANI | GGCC | 3 cut(s) | 101, 289, 436 |
| BspCNI | CTCAG | 2 cut(s) | 283, 488 |
| BspFNI | CGCG | 1 cut(s) | 168 |
| BspLI | GGNNCC | 2 cut(s) | 216, 257 |
| BspPI | GGATC | 1 cut(s) | 336 |
| BspT107I | GGYRCC | 1 cut(s) | 214 |
| BspTNI | GGTCTC | 1 cut(s) | 617 |
| BsrDI | GCAATG | 1 cut(s) | 218 |
| BsrFI | RCCGGY | 2 cut(s) | 211, 576 |
| BsrI | ACTGG | 2 cut(s) | 302, 443 |
| BssAI | RCCGGY | 2 cut(s) | 211, 576 |
| BssECI | CCNNGG | 2 cut(s) | 72, 166 |
| BssMI | GATC | 4 cut(s) | 143, 328, 378, 412 |
| BssNI | GRCGYC | 1 cut(s) | 588 |
| BssT1I | CCWWGG | 1 cut(s) | 72 |
| Bst2UI | CCWGG | 1 cut(s) | 604 |
| Bst4CI | ACNGT | 2 cut(s) | 155, 177 |
| BstACI | GRCGYC | 1 cut(s) | 588 |
| BstBAI | YACGTR | 1 cut(s) | 347 |
| BstC8I | GCNNGC | 1 cut(s) | 43 |
| BstDEI | CTNAG | 3 cut(s) | 112, 291, 475 |
| BstDSI | CCRYGG | 2 cut(s) | 72, 166 |
| BstF5I | GGATG | 2 cut(s) | 10, 439 |
| BstFNI | CGCG | 1 cut(s) | 168 |
| BstHHI | GCGC | 1 cut(s) | 173 |
| BstKTI | GATC | 4 cut(s) | 146, 331, 381, 415 |
| BstMAI | GTCTC | 2 cut(s) | 484, 617 |
| BstMBI | GATC | 4 cut(s) | 143, 328, 378, 412 |
| BstMCI | CGRYCG | 2 cut(s) | 381, 437 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 47, 95, 107, 155, 193, 212, 433, 436 |
| BstNI | CCWGG | 1 cut(s) | 604 |
| BstSCI | CCNGG | 1 cut(s) | 602 |
| BstUI | CGCG | 1 cut(s) | 168 |
| BstV1I | GCAGC | 2 cut(s) | 49, 183 |
| BstX2I | RGATCY | 1 cut(s) | 412 |
| BstYI | RGATCY | 1 cut(s) | 412 |
| BstZI | CGGCCG | 1 cut(s) | 434 |
| BsuRI | GGCC | 3 cut(s) | 101, 289, 436 |
| BtgI | CCRYGG | 2 cut(s) | 72, 166 |
| BtsCI | GGATG | 2 cut(s) | 10, 439 |
| BtsI | GCAGTG | 1 cut(s) | 84 |
| BtsIMutI | CAGTG | 2 cut(s) | 84, 160 |
| Cac8I | GCNNGC | 1 cut(s) | 43 |
| CfoI | GCGC | 1 cut(s) | 173 |
| Cfr10I | RCCGGY | 2 cut(s) | 211, 576 |
| Cfr13I | GGNCC | 2 cut(s) | 226, 256 |
| Cfr42I | CCGCGG | 1 cut(s) | 169 |
| CseI | GACGC | 1 cut(s) | 596 |
| CviAII | CATG | 2 cut(s) | 73, 628 |
| DdeI | CTNAG | 3 cut(s) | 112, 291, 475 |
| DpnI | GATC | 4 cut(s) | 145, 330, 380, 414 |
| DpnII | GATC | 4 cut(s) | 143, 328, 378, 412 |
| EaeI | YGGCCR | 1 cut(s) | 434 |
| EagI | CGGCCG | 1 cut(s) | 434 |
| EciI | GGCGGA | 1 cut(s) | 482 |
| Ecl136II | GAGCTC | 1 cut(s) | 474 |
| EclXI | CGGCCG | 1 cut(s) | 434 |
| Eco130I | CCWWGG | 1 cut(s) | 72 |
| Eco147I | AGGCCT | 1 cut(s) | 289 |
| Eco24I | GRGCYC | 1 cut(s) | 476 |
| Eco31I | GGTCTC | 1 cut(s) | 617 |
| Eco47I | GGWCC | 2 cut(s) | 226, 256 |
| Eco52I | CGGCCG | 1 cut(s) | 434 |
| Eco53kI | GAGCTC | 1 cut(s) | 474 |
| EcoICRI | GAGCTC | 1 cut(s) | 474 |
| EcoO109I | RGGNCCY | 2 cut(s) | 226, 256 |
| EcoRII | CCWGG | 1 cut(s) | 602 |
| EcoT14I | CCWWGG | 1 cut(s) | 72 |
| EcoT38I | GRGCYC | 1 cut(s) | 476 |
| ErhI | CCWWGG | 1 cut(s) | 72 |
| FaeI | CATG | 2 cut(s) | 76, 631 |
| FaiI | YATR | 6 cut(s) | 74, 163, 253, 316, 396, 629 |
| FaqI | GGGAC | 2 cut(s) | 498, 536 |
| FatI | CATG | 2 cut(s) | 72, 627 |
| FauI | CCCGC | 2 cut(s) | 50, 564 |
| Fnu4HI | GCNGC | 8 cut(s) | 63, 99, 166, 169, 197, 428, 437, 560 |
| FokI | GGATG | 2 cut(s) | 17, 426 |
| FriOI | GRGCYC | 1 cut(s) | 476 |
| Fsp4HI | GCNGC | 8 cut(s) | 63, 99, 166, 169, 197, 428, 437, 560 |
| FspBI | CTAG | 4 cut(s) | 141, 188, 248, 456 |
| GlaI | GCGC | 1 cut(s) | 172 |
| GluI | GCNGC | 8 cut(s) | 63, 99, 166, 169, 197, 428, 437, 560 |
| GsaI | CCCAGC | 1 cut(s) | 30 |
| HaeIII | GGCC | 3 cut(s) | 101, 289, 436 |
| HapII | CCGG | 2 cut(s) | 212, 577 |
| HgaI | GACGC | 1 cut(s) | 596 |
| HhaI | GCGC | 1 cut(s) | 173 |
| Hin1I | GRCGYC | 1 cut(s) | 588 |
| Hin1II | CATG | 2 cut(s) | 76, 631 |
| Hin6I | GCGC | 1 cut(s) | 171 |
| HinP1I | GCGC | 1 cut(s) | 171 |
| HincII | GTYRAC | 2 cut(s) | 133, 616 |
| HindII | GTYRAC | 2 cut(s) | 133, 616 |
| HinfI | GANTC | 1 cut(s) | 641 |
| HpaII | CCGG | 2 cut(s) | 212, 577 |
| HphI | GGTGA | 2 cut(s) | 362, 440 |
| Hpy166II | GTNNAC | 4 cut(s) | 133, 353, 448, 616 |
| Hpy188I | TCNGA | 1 cut(s) | 532 |
| Hpy188III | TCNNGA | 6 cut(s) | 141, 274, 382, 416, 469, 645 |
| Hpy8I | GTNNAC | 4 cut(s) | 133, 353, 448, 616 |
| Hpy99I | CGWCG | 2 cut(s) | 587, 590 |
| HpyCH4III | ACNGT | 2 cut(s) | 155, 177 |
| HpyCH4IV | ACGT | 2 cut(s) | 235, 346 |
| HpyCH4V | TGCA | 8 cut(s) | 8, 158, 206, 223, 311, 361, 388, 598 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 47, 95, 107, 155, 193, 212, 433, 436 |
| HpyF3I | CTNAG | 3 cut(s) | 112, 291, 475 |
| HpySE526I | ACGT | 2 cut(s) | 235, 346 |
| Hsp92I | GRCGYC | 1 cut(s) | 588 |
| Hsp92II | CATG | 2 cut(s) | 76, 631 |
| HspAI | GCGC | 1 cut(s) | 171 |
| KspI | CCGCGG | 1 cut(s) | 169 |
| Kzo9I | GATC | 4 cut(s) | 143, 328, 378, 412 |
| Lsp1109I | GCAGC | 2 cut(s) | 49, 183 |
| LweI | GCATC | 2 cut(s) | 375, 448 |
| MaeI | CTAG | 4 cut(s) | 141, 188, 248, 456 |
| MaeII | ACGT | 2 cut(s) | 235, 346 |
| MaeIII | GTNAC | 1 cut(s) | 82 |
| MalI | GATC | 4 cut(s) | 145, 330, 380, 414 |
| MboI | GATC | 4 cut(s) | 143, 328, 378, 412 |
| MboII | GAAGA | 1 cut(s) | 232 |
| MflI | RGATCY | 1 cut(s) | 412 |
| MhlI | GDGCHC | 1 cut(s) | 476 |
| MmeI | TCCRAC | 1 cut(s) | 256 |
| MseI | TTAA | 1 cut(s) | 509 |
| MspA1I | CMGCKG | 2 cut(s) | 168, 196 |
| MspI | CCGG | 2 cut(s) | 212, 577 |
| MspR9I | CCNGG | 1 cut(s) | 604 |
| MvaI | CCWGG | 1 cut(s) | 604 |
| MvnI | CGCG | 1 cut(s) | 168 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 47, 95, 107, 155, 193, 212, 433, 436 |
| NcoI | CCATGG | 1 cut(s) | 72 |
| NdeII | GATC | 4 cut(s) | 143, 328, 378, 412 |
| NlaIII | CATG | 2 cut(s) | 76, 631 |
| NlaIV | GGNNCC | 2 cut(s) | 216, 257 |
| NmuCI | GTSAC | 1 cut(s) | 82 |
| PceI | AGGCCT | 1 cut(s) | 289 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 546, 588 |
| PflFI | GACNNNGTC | 3 cut(s) | 80, 501, 548 |
| PkrI | GCNGC | 8 cut(s) | 64, 100, 167, 170, 198, 429, 438, 561 |
| Ple19I | CGATCG | 1 cut(s) | 381 |
| Ppu21I | YACGTR | 1 cut(s) | 347 |
| PpuMI | RGGWCCY | 2 cut(s) | 226, 256 |
| Psp124BI | GAGCTC | 1 cut(s) | 476 |
| Psp1406I | AACGTT | 1 cut(s) | 235 |
| Psp5II | RGGWCCY | 2 cut(s) | 226, 256 |
| Psp6I | CCWGG | 1 cut(s) | 602 |
| PspFI | CCCAGC | 1 cut(s) | 26 |
| PspGI | CCWGG | 1 cut(s) | 602 |
| PspN4I | GGNNCC | 2 cut(s) | 216, 257 |
| PspPI | GGNCC | 2 cut(s) | 226, 256 |
| PspPPI | RGGWCCY | 2 cut(s) | 226, 256 |
| PsuI | RGATCY | 1 cut(s) | 412 |
| PsyI | GACNNNGTC | 3 cut(s) | 80, 501, 548 |
| PvuI | CGATCG | 1 cut(s) | 381 |
| PvuII | CAGCTG | 1 cut(s) | 196 |
| SacI | GAGCTC | 1 cut(s) | 476 |
| SacII | CCGCGG | 1 cut(s) | 169 |
| SaqAI | TTAA | 1 cut(s) | 509 |
| SatI | GCNGC | 8 cut(s) | 63, 99, 166, 169, 197, 428, 437, 560 |
| Sau3AI | GATC | 4 cut(s) | 143, 328, 378, 412 |
| Sau96I | GGNCC | 2 cut(s) | 226, 256 |
| ScrFI | CCNGG | 1 cut(s) | 604 |
| SduI | GDGCHC | 1 cut(s) | 476 |
| SfaNI | GCATC | 2 cut(s) | 375, 448 |
| Sfr303I | CCGCGG | 1 cut(s) | 169 |
| SgrBI | CCGCGG | 1 cut(s) | 169 |
| SinI | GGWCC | 2 cut(s) | 226, 256 |
| SmlI | CTYRAG | 1 cut(s) | 260 |
| SmoI | CTYRAG | 1 cut(s) | 260 |
| SseBI | AGGCCT | 1 cut(s) | 289 |
| SsiI | CCGC | 9 cut(s) | 43, 98, 166, 168, 427, 437, 493, 557, 560 |
| SspMI | CTAG | 4 cut(s) | 141, 188, 248, 456 |
| SstI | GAGCTC | 1 cut(s) | 476 |
| StuI | AGGCCT | 1 cut(s) | 289 |
| StyD4I | CCNGG | 1 cut(s) | 602 |
| StyI | CCWWGG | 1 cut(s) | 72 |
| TaaI | ACNGT | 2 cut(s) | 155, 177 |
| TaiI | ACGT | 2 cut(s) | 238, 349 |
| TaqI | TCGA | 2 cut(s) | 331, 582 |
| TauI | GCSGC | 6 cut(s) | 101, 168, 171, 430, 439, 562 |
| Tru1I | TTAA | 1 cut(s) | 509 |
| Tru9I | TTAA | 1 cut(s) | 509 |
| TscAI | CASTG | 2 cut(s) | 91, 160 |
| TseFI | GTSAC | 1 cut(s) | 82 |
| TseI | GCWGC | 2 cut(s) | 62, 196 |
| Tsp45I | GTSAC | 1 cut(s) | 82 |
| TspRI | CASTG | 2 cut(s) | 91, 160 |
| Tth111I | GACNNNGTC | 3 cut(s) | 80, 501, 548 |
| VpaK11BI | GGWCC | 2 cut(s) | 226, 256 |
| XbaI | TCTAGA | 1 cut(s) | 140 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 634 |
| XspI | CTAG | 4 cut(s) | 141, 188, 248, 456 |