Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 8 |
| Acc16I | TGCGCA | 1 cut(s) | 519 |
| Acc36I | ACCTGC | 1 cut(s) | 378 |
| AciI | CCGC | 2 cut(s) | 36, 159 |
| AcuI | CTGAAG | 1 cut(s) | 81 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 3 cut(s) | 195, 279, 299 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 505 |
| AgsI | TTSAA | 1 cut(s) | 85 |
| AluBI | AGCT | 3 cut(s) | 30, 116, 632 |
| AluI | AGCT | 3 cut(s) | 30, 116, 632 |
| Alw26I | GTCTC | 1 cut(s) | 258 |
| AoxI | GGCC | 2 cut(s) | 290, 496 |
| ApeKI | GCWGC | 2 cut(s) | 207, 322 |
| AspLEI | GCGC | 2 cut(s) | 158, 520 |
| AspS9I | GGNCC | 1 cut(s) | 290 |
| BaeGI | GKGCMC | 1 cut(s) | 313 |
| BanII | GRGCYC | 1 cut(s) | 59 |
| BbvI | GCAGC | 2 cut(s) | 194, 309 |
| BccI | CCATC | 1 cut(s) | 329 |
| BceAI | ACGGC | 1 cut(s) | 277 |
| BclI | TGATCA | 2 cut(s) | 253, 472 |
| BcoDI | GTCTC | 1 cut(s) | 258 |
| BfaI | CTAG | 4 cut(s) | 44, 50, 125, 413 |
| BfuAI | ACCTGC | 1 cut(s) | 378 |
| BglII | AGATCT | 1 cut(s) | 163 |
| BisI | GCNGC | 4 cut(s) | 36, 159, 208, 323 |
| BlsI | GCNGC | 4 cut(s) | 37, 160, 209, 324 |
| BmcAI | AGTACT | 1 cut(s) | 279 |
| BmgT120I | GGNCC | 1 cut(s) | 290 |
| BmsI | GCATC | 3 cut(s) | 452, 469, 541 |
| BpuEI | CTTGAG | 2 cut(s) | 96, 218 |
| BsaBI | GATNNNNATC | 1 cut(s) | 471 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 258 |
| BsaJI | CCNNGG | 1 cut(s) | 293 |
| BsaWI | WCCGGW | 1 cut(s) | 267 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 505 |
| Bse8I | GATNNNNATC | 1 cut(s) | 471 |
| BseDI | CCNNGG | 1 cut(s) | 293 |
| BseGI | GGATG | 2 cut(s) | 532, 564 |
| BseJI | GATNNNNATC | 1 cut(s) | 471 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 505 |
| BseSI | GKGCMC | 1 cut(s) | 313 |
| BseXI | GCAGC | 2 cut(s) | 194, 309 |
| BsgI | GTGCAG | 2 cut(s) | 208, 236 |
| BshFI | GGCC | 2 cut(s) | 292, 498 |
| BsiSI | CCGG | 1 cut(s) | 268 |
| BslFI | GGGAC | 2 cut(s) | 246, 344 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 505 |
| BsmAI | GTCTC | 1 cut(s) | 258 |
| BsmFI | GGGAC | 2 cut(s) | 246, 344 |
| BsnI | GGCC | 2 cut(s) | 292, 498 |
| Bso31I | GGTCTC | 1 cut(s) | 258 |
| Bsp1286I | GDGCHC | 2 cut(s) | 59, 313 |
| Bsp143I | GATC | 4 cut(s) | 101, 163, 253, 472 |
| BspACI | CCGC | 2 cut(s) | 36, 159 |
| BspANI | GGCC | 2 cut(s) | 292, 498 |
| BspMI | ACCTGC | 1 cut(s) | 378 |
| BspQI | GCTCTTC | 1 cut(s) | 380 |
| BspTNI | GGTCTC | 1 cut(s) | 258 |
| BssECI | CCNNGG | 1 cut(s) | 293 |
| BssMI | GATC | 4 cut(s) | 101, 163, 253, 472 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst6I | CTCTTC | 2 cut(s) | 380, 411 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 449 |
| BstC8I | GCNNGC | 3 cut(s) | 28, 354, 522 |
| BstDSI | CCRYGG | 1 cut(s) | 293 |
| BstF5I | GGATG | 2 cut(s) | 532, 564 |
| BstHHI | GCGC | 2 cut(s) | 158, 520 |
| BstKTI | GATC | 4 cut(s) | 104, 166, 256, 475 |
| BstMAI | GTCTC | 1 cut(s) | 258 |
| BstMBI | GATC | 4 cut(s) | 101, 163, 253, 472 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 44, 449 |
| BstNSI | RCATGY | 2 cut(s) | 524, 619 |
| BstSLI | GKGCMC | 1 cut(s) | 313 |
| BstV1I | GCAGC | 2 cut(s) | 194, 309 |
| BstX2I | RGATCY | 1 cut(s) | 163 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 86 |
| BstYI | RGATCY | 1 cut(s) | 163 |
| BsuRI | GGCC | 2 cut(s) | 292, 498 |
| BtgI | CCRYGG | 1 cut(s) | 293 |
| BtsCI | GGATG | 2 cut(s) | 532, 564 |
| BveI | ACCTGC | 1 cut(s) | 378 |
| Cac8I | GCNNGC | 3 cut(s) | 28, 354, 522 |
| CfoI | GCGC | 2 cut(s) | 158, 520 |
| Cfr13I | GGNCC | 1 cut(s) | 290 |
| Csp6I | GTAC | 3 cut(s) | 194, 278, 298 |
| CviAII | CATG | 4 cut(s) | 512, 521, 611, 616 |
| CviQI | GTAC | 3 cut(s) | 194, 278, 298 |
| DpnI | GATC | 4 cut(s) | 103, 165, 255, 474 |
| DpnII | GATC | 4 cut(s) | 101, 163, 253, 472 |
| Eam1104I | CTCTTC | 2 cut(s) | 380, 411 |
| EarI | CTCTTC | 2 cut(s) | 380, 411 |
| Eco147I | AGGCCT | 1 cut(s) | 498 |
| Eco24I | GRGCYC | 1 cut(s) | 59 |
| Eco31I | GGTCTC | 1 cut(s) | 258 |
| Eco57I | CTGAAG | 1 cut(s) | 81 |
| EcoT38I | GRGCYC | 1 cut(s) | 59 |
| FaeI | CATG | 4 cut(s) | 515, 524, 614, 619 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 105, 137 |
| FaqI | GGGAC | 2 cut(s) | 246, 344 |
| FatI | CATG | 4 cut(s) | 511, 520, 610, 615 |
| FbaI | TGATCA | 2 cut(s) | 253, 472 |
| Fnu4HI | GCNGC | 4 cut(s) | 36, 159, 208, 323 |
| FokI | GGATG | 2 cut(s) | 519, 551 |
| FriOI | GRGCYC | 1 cut(s) | 59 |
| Fsp4HI | GCNGC | 4 cut(s) | 36, 159, 208, 323 |
| FspBI | CTAG | 4 cut(s) | 44, 50, 125, 413 |
| FspI | TGCGCA | 1 cut(s) | 519 |
| GlaI | GCGC | 2 cut(s) | 157, 519 |
| GluI | GCNGC | 4 cut(s) | 36, 159, 208, 323 |
| HaeIII | GGCC | 2 cut(s) | 292, 498 |
| HapII | CCGG | 1 cut(s) | 268 |
| HhaI | GCGC | 2 cut(s) | 158, 520 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 4 cut(s) | 515, 524, 614, 619 |
| Hin6I | GCGC | 2 cut(s) | 156, 518 |
| HinP1I | GCGC | 2 cut(s) | 156, 518 |
| HindIII | AAGCTT | 1 cut(s) | 114 |
| HinfI | GANTC | 1 cut(s) | 347 |
| HpaII | CCGG | 1 cut(s) | 268 |
| Hpy166II | GTNNAC | 1 cut(s) | 70 |
| Hpy188I | TCNGA | 4 cut(s) | 61, 138, 258, 546 |
| Hpy188III | TCNNGA | 1 cut(s) | 464 |
| Hpy8I | GTNNAC | 1 cut(s) | 70 |
| HpyCH4IV | ACGT | 2 cut(s) | 5, 550 |
| HpyCH4V | TGCA | 6 cut(s) | 210, 217, 225, 325, 356, 443 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 44, 449 |
| HpySE526I | ACGT | 2 cut(s) | 5, 550 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 4 cut(s) | 515, 524, 614, 619 |
| HspAI | GCGC | 2 cut(s) | 156, 518 |
| Ksp22I | TGATCA | 2 cut(s) | 253, 472 |
| Kzo9I | GATC | 4 cut(s) | 101, 163, 253, 472 |
| LguI | GCTCTTC | 1 cut(s) | 380 |
| LpnPI | CCDG | 9 cut(s) | 78, 203, 215, 281, 381, 383, 420, 438, 449 |
| Lsp1109I | GCAGC | 2 cut(s) | 194, 309 |
| LweI | GCATC | 3 cut(s) | 452, 469, 541 |
| MaeI | CTAG | 4 cut(s) | 44, 50, 125, 413 |
| MaeII | ACGT | 2 cut(s) | 5, 550 |
| MalI | GATC | 4 cut(s) | 103, 165, 255, 474 |
| MboI | GATC | 4 cut(s) | 101, 163, 253, 472 |
| MboII | GAAGA | 3 cut(s) | 113, 367, 428 |
| MflI | RGATCY | 1 cut(s) | 163 |
| MhlI | GDGCHC | 2 cut(s) | 59, 313 |
| MluCI | AATT | 1 cut(s) | 390 |
| MmeI | TCCRAC | 1 cut(s) | 193 |
| MnlI | CCTC | 7 cut(s) | 46, 118, 144, 193, 197, 281, 337 |
| MseI | TTAA | 2 cut(s) | 303, 387 |
| MslI | CAYNNNNRTG | 1 cut(s) | 84 |
| MspI | CCGG | 1 cut(s) | 268 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 44, 449 |
| NdeII | GATC | 4 cut(s) | 101, 163, 253, 472 |
| NlaIII | CATG | 4 cut(s) | 515, 524, 614, 619 |
| NsbI | TGCGCA | 1 cut(s) | 519 |
| NspI | RCATGY | 2 cut(s) | 524, 619 |
| PaeI | GCATGC | 1 cut(s) | 524 |
| PceI | AGGCCT | 1 cut(s) | 498 |
| PciSI | GCTCTTC | 1 cut(s) | 380 |
| PfeI | GAWTC | 1 cut(s) | 347 |
| PkrI | GCNGC | 4 cut(s) | 37, 160, 209, 324 |
| PspPI | GGNCC | 1 cut(s) | 290 |
| PsuI | RGATCY | 1 cut(s) | 163 |
| RsaI | GTAC | 3 cut(s) | 195, 279, 299 |
| RsaNI | GTAC | 3 cut(s) | 194, 278, 298 |
| RseI | CAYNNNNRTG | 1 cut(s) | 84 |
| SapI | GCTCTTC | 1 cut(s) | 380 |
| SaqAI | TTAA | 2 cut(s) | 303, 387 |
| SatI | GCNGC | 4 cut(s) | 36, 159, 208, 323 |
| Sau3AI | GATC | 4 cut(s) | 101, 163, 253, 472 |
| Sau96I | GGNCC | 1 cut(s) | 290 |
| ScaI | AGTACT | 1 cut(s) | 279 |
| SduI | GDGCHC | 2 cut(s) | 59, 313 |
| SfaNI | GCATC | 3 cut(s) | 452, 469, 541 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 84 |
| SmlI | CTYRAG | 2 cut(s) | 111, 197 |
| SmoI | CTYRAG | 2 cut(s) | 111, 197 |
| SphI | GCATGC | 1 cut(s) | 524 |
| Sse9I | AATT | 1 cut(s) | 390 |
| SseBI | AGGCCT | 1 cut(s) | 498 |
| SsiI | CCGC | 2 cut(s) | 36, 159 |
| SspMI | CTAG | 4 cut(s) | 44, 50, 125, 413 |
| StuI | AGGCCT | 1 cut(s) | 498 |
| TaiI | ACGT | 2 cut(s) | 8, 553 |
| TaqI | TCGA | 1 cut(s) | 342 |
| TasI | AATT | 1 cut(s) | 390 |
| TatI | WGTACW | 1 cut(s) | 277 |
| TauI | GCSGC | 2 cut(s) | 38, 161 |
| TfiI | GAWTC | 1 cut(s) | 347 |
| Tru1I | TTAA | 2 cut(s) | 303, 387 |
| Tru9I | TTAA | 2 cut(s) | 303, 387 |
| TseI | GCWGC | 2 cut(s) | 207, 322 |
| TspDTI | ATGAA | 3 cut(s) | 380, 449, 500 |
| XceI | RCATGY | 2 cut(s) | 524, 619 |
| XspI | CTAG | 4 cut(s) | 44, 50, 125, 413 |
| ZraI | GACGTC | 1 cut(s) | 6 |
| ZrmI | AGTACT | 1 cut(s) | 279 |