ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 571 |
| Acc36I | ACCTGC | 1 cut(s) | 575 |
| AccIII | TCCGGA | 1 cut(s) | 314 |
| AciI | CCGC | 3 cut(s) | 596, 618, 890 |
| AclWI | GGATC | 1 cut(s) | 913 |
| AcoI | YGGCCR | 1 cut(s) | 887 |
| AcuI | CTGAAG | 1 cut(s) | 360 |
| AfaI | GTAC | 4 cut(s) | 88, 353, 584, 632 |
| AfeI | AGCGCT | 1 cut(s) | 501 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 233, 339 |
| AflIII | ACRYGT | 2 cut(s) | 579, 694 |
| AgsI | TTSAA | 4 cut(s) | 58, 125, 463, 743 |
| AjiI | CACGTC | 2 cut(s) | 580, 695 |
| AjnI | CCWGG | 2 cut(s) | 393, 825 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 50, 82 |
| AluBI | AGCT | 5 cut(s) | 28, 38, 294, 878, 914 |
| AluI | AGCT | 5 cut(s) | 28, 38, 294, 878, 914 |
| Alw21I | GWGCWC | 1 cut(s) | 146 |
| Alw26I | GTCTC | 1 cut(s) | 865 |
| AlwI | GGATC | 1 cut(s) | 913 |
| Ama87I | CYCGRG | 1 cut(s) | 539 |
| Aor13HI | TCCGGA | 1 cut(s) | 314 |
| Aor51HI | AGCGCT | 1 cut(s) | 501 |
| AoxI | GGCC | 5 cut(s) | 484, 705, 774, 803, 887 |
| ApeKI | GCWGC | 5 cut(s) | 205, 291, 435, 497, 911 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 207, 239 |
| AspA2I | CCTAGG | 1 cut(s) | 334 |
| AspLEI | GCGC | 4 cut(s) | 210, 497, 502, 853 |
| AspS9I | GGNCC | 1 cut(s) | 317 |
| AsuC2I | CCSGG | 1 cut(s) | 838 |
| AsuHPI | GGTGA | 1 cut(s) | 181 |
| AsuNHI | GCTAGC | 1 cut(s) | 914 |
| AvaI | CYCGRG | 1 cut(s) | 539 |
| AvaII | GGWCC | 1 cut(s) | 317 |
| AvrII | CCTAGG | 1 cut(s) | 334 |
| BaeGI | GKGCMC | 1 cut(s) | 521 |
| BauI | CACGAG | 2 cut(s) | 272, 797 |
| Bbv12I | GWGCWC | 1 cut(s) | 146 |
| BbvI | GCAGC | 5 cut(s) | 192, 303, 447, 509, 923 |
| BccI | CCATC | 1 cut(s) | 333 |
| BceAI | ACGGC | 1 cut(s) | 692 |
| BciT130I | CCWGG | 2 cut(s) | 395, 827 |
| BciVI | GTATCC | 1 cut(s) | 521 |
| BcnI | CCSGG | 1 cut(s) | 838 |
| BcoDI | GTCTC | 1 cut(s) | 865 |
| BfaI | CTAG | 4 cut(s) | 152, 335, 605, 915 |
| BfoI | RGCGCY | 2 cut(s) | 503, 854 |
| BfuAI | ACCTGC | 1 cut(s) | 575 |
| BfuI | GTATCC | 1 cut(s) | 521 |
| BisI | GCNGC | 6 cut(s) | 206, 292, 436, 498, 890, 912 |
| BlnI | CCTAGG | 1 cut(s) | 334 |
| BlsI | GCNGC | 6 cut(s) | 207, 293, 437, 499, 891, 913 |
| Bme1390I | CCNGG | 3 cut(s) | 395, 827, 838 |
| Bme18I | GGWCC | 1 cut(s) | 317 |
| BmeT110I | CYCGRG | 1 cut(s) | 539 |
| BmgBI | CACGTC | 2 cut(s) | 580, 695 |
| BmgT120I | GGNCC | 1 cut(s) | 317 |
| BmiI | GGNNCC | 1 cut(s) | 344 |
| BmrFI | CCNGG | 3 cut(s) | 395, 827, 838 |
| BmsI | GCATC | 1 cut(s) | 246 |
| BmtI | GCTAGC | 1 cut(s) | 918 |
| BoxI | GACNNNNGTC | 1 cut(s) | 821 |
| BpmI | CTGGAG | 4 cut(s) | 130, 377, 387, 576 |
| BpuEI | CTTGAG | 1 cut(s) | 722 |
| BpuMI | CCSGG | 1 cut(s) | 838 |
| BsaJI | CCNNGG | 3 cut(s) | 334, 472, 708 |
| BsaWI | WCCGGW | 2 cut(s) | 314, 319 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 296, 326, 375, 405 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 233, 339 |
| Bse1I | ACTGG | 4 cut(s) | 147, 206, 559, 938 |
| Bse3DI | GCAATG | 4 cut(s) | 227, 531, 789, 918 |
| BseAI | TCCGGA | 1 cut(s) | 314 |
| BseBI | CCWGG | 2 cut(s) | 395, 827 |
| BseDI | CCNNGG | 3 cut(s) | 334, 472, 708 |
| BseGI | GGATG | 3 cut(s) | 344, 718, 784 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 233, 339 |
| BseMI | GCAATG | 4 cut(s) | 227, 531, 789, 918 |
| BseMII | CTCAG | 1 cut(s) | 479 |
| BseNI | ACTGG | 4 cut(s) | 147, 206, 559, 938 |
| BseSI | GKGCMC | 1 cut(s) | 521 |
| BseXI | GCAGC | 5 cut(s) | 192, 303, 447, 509, 923 |
| BsgI | GTGCAG | 1 cut(s) | 155 |
| Bsh1285I | CGRYCG | 1 cut(s) | 629 |
| BshFI | GGCC | 5 cut(s) | 486, 707, 776, 805, 889 |
| BsiEI | CGRYCG | 1 cut(s) | 629 |
| BsiHKAI | GWGCWC | 1 cut(s) | 146 |
| BsiHKCI | CYCGRG | 1 cut(s) | 539 |
| BsiSI | CCGG | 3 cut(s) | 315, 320, 837 |
| BslFI | GGGAC | 1 cut(s) | 209 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 233, 339 |
| BsmAI | GTCTC | 1 cut(s) | 865 |
| BsmFI | GGGAC | 1 cut(s) | 209 |
| BsnI | GGCC | 5 cut(s) | 486, 707, 776, 805, 889 |
| BsoBI | CYCGRG | 1 cut(s) | 539 |
| Bsp1286I | GDGCHC | 2 cut(s) | 146, 521 |
| Bsp13I | TCCGGA | 1 cut(s) | 314 |
| Bsp143I | GATC | 3 cut(s) | 156, 357, 905 |
| BspACI | CCGC | 3 cut(s) | 596, 618, 890 |
| BspANI | GGCC | 5 cut(s) | 486, 707, 776, 805, 889 |
| BspCNI | CTCAG | 1 cut(s) | 480 |
| BspEI | TCCGGA | 1 cut(s) | 314 |
| BspLI | GGNNCC | 1 cut(s) | 344 |
| BspMI | ACCTGC | 1 cut(s) | 575 |
| BspOI | GCTAGC | 1 cut(s) | 918 |
| BspPI | GGATC | 1 cut(s) | 913 |
| BsrDI | GCAATG | 4 cut(s) | 227, 531, 789, 918 |
| BsrI | ACTGG | 4 cut(s) | 147, 206, 559, 938 |
| BssECI | CCNNGG | 3 cut(s) | 334, 472, 708 |
| BssMI | GATC | 3 cut(s) | 156, 357, 905 |
| BssSI | CACGAG | 2 cut(s) | 272, 797 |
| BssT1I | CCWWGG | 2 cut(s) | 334, 472 |
| Bst2BI | CACGAG | 2 cut(s) | 272, 797 |
| Bst2UI | CCWGG | 2 cut(s) | 395, 827 |
| Bst4CI | ACNGT | 3 cut(s) | 91, 587, 630 |
| BstC8I | GCNNGC | 4 cut(s) | 469, 774, 778, 916 |
| BstDEI | CTNAG | 3 cut(s) | 295, 488, 807 |
| BstDSI | CCRYGG | 1 cut(s) | 708 |
| BstF5I | GGATG | 3 cut(s) | 344, 718, 784 |
| BstH2I | RGCGCY | 2 cut(s) | 503, 854 |
| BstHHI | GCGC | 4 cut(s) | 210, 497, 502, 853 |
| BstKTI | GATC | 3 cut(s) | 159, 360, 908 |
| BstMAI | GTCTC | 1 cut(s) | 865 |
| BstMBI | GATC | 3 cut(s) | 156, 357, 905 |
| BstMCI | CGRYCG | 1 cut(s) | 629 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 300, 483, 492, 769, 895, 920 |
| BstNI | CCWGG | 2 cut(s) | 395, 827 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 821 |
| BstSCI | CCNGG | 3 cut(s) | 393, 825, 836 |
| BstSLI | GKGCMC | 1 cut(s) | 521 |
| BstV1I | GCAGC | 5 cut(s) | 192, 303, 447, 509, 923 |
| BsuI | GTATCC | 1 cut(s) | 521 |
| BsuRI | GGCC | 5 cut(s) | 486, 707, 776, 805, 889 |
| BtgI | CCRYGG | 1 cut(s) | 708 |
| BtrI | CACGTC | 2 cut(s) | 580, 695 |
| BtsCI | GGATG | 3 cut(s) | 344, 718, 784 |
| BtsI | GCAGTG | 1 cut(s) | 138 |
| BtsIMutI | CAGTG | 3 cut(s) | 138, 552, 931 |
| BveI | ACCTGC | 1 cut(s) | 575 |
| Cac8I | GCNNGC | 4 cut(s) | 469, 774, 778, 916 |
| CfoI | GCGC | 4 cut(s) | 210, 497, 502, 853 |
| Cfr13I | GGNCC | 1 cut(s) | 317 |
| CpoI | CGGWCCG | 1 cut(s) | 317 |
| Csp6I | GTAC | 4 cut(s) | 87, 352, 583, 631 |
| CspI | CGGWCCG | 1 cut(s) | 317 |
| CviAII | CATG | 1 cut(s) | 280 |
| CviQI | GTAC | 4 cut(s) | 87, 352, 583, 631 |
| DdeI | CTNAG | 3 cut(s) | 295, 488, 807 |
| DpnI | GATC | 3 cut(s) | 158, 359, 907 |
| DpnII | GATC | 3 cut(s) | 156, 357, 905 |
| DraI | TTTAAA | 1 cut(s) | 871 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 571 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 571 |
| EaeI | YGGCCR | 1 cut(s) | 887 |
| Eco130I | CCWWGG | 2 cut(s) | 334, 472 |
| Eco147I | AGGCCT | 1 cut(s) | 805 |
| Eco47I | GGWCC | 1 cut(s) | 317 |
| Eco47III | AGCGCT | 1 cut(s) | 501 |
| Eco57I | CTGAAG | 1 cut(s) | 360 |
| Eco88I | CYCGRG | 1 cut(s) | 539 |
| EcoRII | CCWGG | 2 cut(s) | 393, 825 |
| EcoT14I | CCWWGG | 2 cut(s) | 334, 472 |
| ErhI | CCWWGG | 2 cut(s) | 334, 472 |
| FaeI | CATG | 1 cut(s) | 283 |
| FaiI | YATR | 9 cut(s) | 84, 219, 266, 281, 362, 443, 684, 735, 821 |
| FaqI | GGGAC | 1 cut(s) | 209 |
| FatI | CATG | 1 cut(s) | 279 |
| Fnu4HI | GCNGC | 6 cut(s) | 206, 292, 436, 498, 890, 912 |
| FokI | GGATG | 3 cut(s) | 351, 725, 771 |
| Fsp4HI | GCNGC | 6 cut(s) | 206, 292, 436, 498, 890, 912 |
| FspBI | CTAG | 4 cut(s) | 152, 335, 605, 915 |
| GlaI | GCGC | 4 cut(s) | 209, 496, 501, 852 |
| GluI | GCNGC | 6 cut(s) | 206, 292, 436, 498, 890, 912 |
| GsuI | CTGGAG | 4 cut(s) | 130, 377, 387, 576 |
| HaeII | RGCGCY | 2 cut(s) | 503, 854 |
| HaeIII | GGCC | 5 cut(s) | 486, 707, 776, 805, 889 |
| HapII | CCGG | 3 cut(s) | 315, 320, 837 |
| HhaI | GCGC | 4 cut(s) | 210, 497, 502, 853 |
| Hin1II | CATG | 1 cut(s) | 283 |
| Hin6I | GCGC | 4 cut(s) | 208, 495, 500, 851 |
| HinP1I | GCGC | 4 cut(s) | 208, 495, 500, 851 |
| HincII | GTYRAC | 1 cut(s) | 623 |
| HindII | GTYRAC | 1 cut(s) | 623 |
| HinfI | GANTC | 2 cut(s) | 452, 572 |
| HpaII | CCGG | 3 cut(s) | 315, 320, 837 |
| HphI | GGTGA | 1 cut(s) | 181 |
| Hpy166II | GTNNAC | 6 cut(s) | 94, 271, 418, 583, 623, 633 |
| Hpy188I | TCNGA | 2 cut(s) | 577, 644 |
| Hpy188III | TCNNGA | 7 cut(s) | 122, 152, 160, 315, 366, 605, 797 |
| Hpy8I | GTNNAC | 6 cut(s) | 94, 271, 418, 583, 623, 633 |
| HpyAV | CCTTC | 3 cut(s) | 500, 683, 896 |
| HpyCH4III | ACNGT | 3 cut(s) | 91, 587, 630 |
| HpyCH4IV | ACGT | 2 cut(s) | 579, 694 |
| HpyCH4V | TGCA | 3 cut(s) | 136, 408, 682 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 300, 483, 492, 769, 895, 920 |
| HpyF3I | CTNAG | 3 cut(s) | 295, 488, 807 |
| HpySE526I | ACGT | 2 cut(s) | 579, 694 |
| Hsp92II | CATG | 1 cut(s) | 283 |
| HspAI | GCGC | 4 cut(s) | 208, 495, 500, 851 |
| Kpn2I | TCCGGA | 1 cut(s) | 314 |
| Kzo9I | GATC | 3 cut(s) | 156, 357, 905 |
| LmnI | GCTCC | 2 cut(s) | 25, 149 |
| Lsp1109I | GCAGC | 5 cut(s) | 192, 303, 447, 509, 923 |
| LweI | GCATC | 1 cut(s) | 246 |
| MaeI | CTAG | 4 cut(s) | 152, 335, 605, 915 |
| MaeII | ACGT | 2 cut(s) | 579, 694 |
| MaeIII | GTNAC | 1 cut(s) | 17 |
| MalI | GATC | 3 cut(s) | 158, 359, 907 |
| MboI | GATC | 3 cut(s) | 156, 357, 905 |
| MboII | GAAGA | 2 cut(s) | 265, 755 |
| MhlI | GDGCHC | 2 cut(s) | 146, 521 |
| MlyI | GAGTC | 1 cut(s) | 581 |
| MroI | TCCGGA | 1 cut(s) | 314 |
| MseI | TTAA | 1 cut(s) | 870 |
| MspI | CCGG | 3 cut(s) | 315, 320, 837 |
| MspR9I | CCNGG | 3 cut(s) | 395, 827, 838 |
| MteI | GCGCNGCGC | 1 cut(s) | 498 |
| MvaI | CCWGG | 2 cut(s) | 395, 827 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 300, 483, 492, 769, 895, 920 |
| NciI | CCSGG | 1 cut(s) | 838 |
| NdeII | GATC | 3 cut(s) | 156, 357, 905 |
| NheI | GCTAGC | 1 cut(s) | 914 |
| NlaIII | CATG | 1 cut(s) | 283 |
| NlaIV | GGNNCC | 1 cut(s) | 344 |
| PceI | AGGCCT | 1 cut(s) | 805 |
| PfeI | GAWTC | 1 cut(s) | 452 |
| PfoI | TCCNGGA | 1 cut(s) | 393 |
| PkrI | GCNGC | 6 cut(s) | 207, 293, 437, 499, 891, 913 |
| PleI | GAGTC | 1 cut(s) | 580 |
| PpsI | GAGTC | 1 cut(s) | 580 |
| PshAI | GACNNNNGTC | 1 cut(s) | 821 |
| Psp6I | CCWGG | 2 cut(s) | 393, 825 |
| PspGI | CCWGG | 2 cut(s) | 393, 825 |
| PspN4I | GGNNCC | 1 cut(s) | 344 |
| PspPI | GGNCC | 1 cut(s) | 317 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 335, 367 |
| RsaI | GTAC | 4 cut(s) | 88, 353, 584, 632 |
| RsaNI | GTAC | 4 cut(s) | 87, 352, 583, 631 |
| Rsr2I | CGGWCCG | 1 cut(s) | 317 |
| RsrII | CGGWCCG | 1 cut(s) | 317 |
| SaqAI | TTAA | 1 cut(s) | 870 |
| SatI | GCNGC | 6 cut(s) | 206, 292, 436, 498, 890, 912 |
| Sau3AI | GATC | 3 cut(s) | 156, 357, 905 |
| Sau96I | GGNCC | 1 cut(s) | 317 |
| SchI | GAGTC | 1 cut(s) | 581 |
| ScrFI | CCNGG | 3 cut(s) | 395, 827, 838 |
| SduI | GDGCHC | 2 cut(s) | 146, 521 |
| SfaNI | GCATC | 1 cut(s) | 246 |
| SinI | GGWCC | 1 cut(s) | 317 |
| SmlI | CTYRAG | 1 cut(s) | 701 |
| SmoI | CTYRAG | 1 cut(s) | 701 |
| SseBI | AGGCCT | 1 cut(s) | 805 |
| SsiI | CCGC | 3 cut(s) | 596, 618, 890 |
| SspMI | CTAG | 4 cut(s) | 152, 335, 605, 915 |
| StuI | AGGCCT | 1 cut(s) | 805 |
| StyD4I | CCNGG | 3 cut(s) | 393, 825, 836 |
| StyI | CCWWGG | 2 cut(s) | 334, 472 |
| TaaI | ACNGT | 3 cut(s) | 91, 587, 630 |
| TaiI | ACGT | 2 cut(s) | 582, 697 |
| TaqI | TCGA | 4 cut(s) | 79, 450, 504, 928 |
| TauI | GCSGC | 1 cut(s) | 892 |
| TfiI | GAWTC | 1 cut(s) | 452 |
| Tru1I | TTAA | 1 cut(s) | 870 |
| Tru9I | TTAA | 1 cut(s) | 870 |
| TscAI | CASTG | 3 cut(s) | 138, 559, 938 |
| TseI | GCWGC | 5 cut(s) | 205, 291, 435, 497, 911 |
| TspDTI | ATGAA | 1 cut(s) | 268 |
| TspGWI | ACGGA | 1 cut(s) | 392 |
| TspRI | CASTG | 3 cut(s) | 138, 559, 938 |
| VpaK11BI | GGWCC | 1 cut(s) | 317 |
| XbaI | TCTAGA | 2 cut(s) | 151, 604 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 234, 882 |
| XmaJI | CCTAGG | 1 cut(s) | 334 |
| XspI | CTAG | 4 cut(s) | 152, 335, 605, 915 |