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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 647 |
| Acc36I | ACCTGC | 1 cut(s) | 647 |
| Acc65I | GGTACC | 1 cut(s) | 142 |
| AccB1I | GGYRCC | 2 cut(s) | 142, 211 |
| AccBSI | CCGCTC | 1 cut(s) | 573 |
| AciI | CCGC | 4 cut(s) | 573, 645, 759, 796 |
| AclWI | GGATC | 4 cut(s) | 348, 379, 594, 806 |
| AcsI | RAATTY | 2 cut(s) | 161, 696 |
| AcuI | CTGAAG | 2 cut(s) | 653, 736 |
| AdeI | CACNNNGTG | 1 cut(s) | 53 |
| AfaI | GTAC | 2 cut(s) | 144, 420 |
| AfeI | AGCGCT | 1 cut(s) | 722 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 343, 795 |
| AflIII | ACRYGT | 1 cut(s) | 403 |
| AgsI | TTSAA | 4 cut(s) | 107, 159, 241, 565 |
| AjiI | CACGTC | 1 cut(s) | 406 |
| AjnI | CCWGG | 3 cut(s) | 196, 336, 530 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 38 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 318, 350 |
| AluBI | AGCT | 3 cut(s) | 76, 665, 713 |
| AluI | AGCT | 3 cut(s) | 76, 665, 713 |
| Alw26I | GTCTC | 2 cut(s) | 198, 226 |
| AlwI | GGATC | 4 cut(s) | 348, 379, 594, 806 |
| Aor51HI | AGCGCT | 1 cut(s) | 722 |
| AoxI | GGCC | 3 cut(s) | 528, 728, 804 |
| ApeKI | GCWGC | 3 cut(s) | 603, 662, 713 |
| ApoI | RAATTY | 2 cut(s) | 161, 696 |
| Asp718I | GGTACC | 1 cut(s) | 142 |
| AspLEI | GCGC | 1 cut(s) | 723 |
| AspS9I | GGNCC | 2 cut(s) | 575, 804 |
| AsuHPI | GGTGA | 4 cut(s) | 51, 245, 350, 592 |
| AvaII | GGWCC | 1 cut(s) | 575 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 134, 167 |
| BanI | GGYRCC | 2 cut(s) | 142, 211 |
| BbvI | GCAGC | 3 cut(s) | 615, 674, 700 |
| BccI | CCATC | 2 cut(s) | 202, 419 |
| BceAI | ACGGC | 2 cut(s) | 494, 543 |
| BciT130I | CCWGG | 3 cut(s) | 198, 338, 532 |
| BcoDI | GTCTC | 2 cut(s) | 198, 226 |
| BfaI | CTAG | 1 cut(s) | 701 |
| BfoI | RGCGCY | 1 cut(s) | 724 |
| BfuAI | ACCTGC | 1 cut(s) | 647 |
| BglII | AGATCT | 1 cut(s) | 463 |
| BisI | GCNGC | 3 cut(s) | 604, 663, 714 |
| BlpI | GCTNAGC | 1 cut(s) | 717 |
| BlsI | GCNGC | 3 cut(s) | 605, 664, 715 |
| Bme1390I | CCNGG | 3 cut(s) | 198, 338, 532 |
| Bme18I | GGWCC | 1 cut(s) | 575 |
| BmgBI | CACGTC | 1 cut(s) | 406 |
| BmgT120I | GGNCC | 2 cut(s) | 575, 804 |
| BmiI | GGNNCC | 4 cut(s) | 144, 213, 482, 547 |
| BmrFI | CCNGG | 3 cut(s) | 198, 338, 532 |
| BmsI | GCATC | 2 cut(s) | 65, 358 |
| BpmI | CTGGAG | 2 cut(s) | 485, 745 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 717 |
| BpuEI | CTTGAG | 1 cut(s) | 536 |
| BsaJI | CCNNGG | 2 cut(s) | 361, 531 |
| BsaWI | WCCGGW | 4 cut(s) | 145, 269, 577, 681 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 343, 795 |
| Bse118I | RCCGGY | 1 cut(s) | 19 |
| Bse1I | ACTGG | 2 cut(s) | 448, 502 |
| Bse3DI | GCAATG | 1 cut(s) | 89 |
| BseBI | CCWGG | 3 cut(s) | 198, 338, 532 |
| BseDI | CCNNGG | 2 cut(s) | 361, 531 |
| BseGI | GGATG | 2 cut(s) | 318, 373 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 343, 795 |
| BseMI | GCAATG | 1 cut(s) | 89 |
| BseMII | CTCAG | 4 cut(s) | 267, 395, 581, 708 |
| BseNI | ACTGG | 2 cut(s) | 448, 502 |
| BseXI | GCAGC | 3 cut(s) | 615, 674, 700 |
| BseYI | CCCAGC | 1 cut(s) | 178 |
| BsgI | GTGCAG | 1 cut(s) | 681 |
| BshFI | GGCC | 3 cut(s) | 530, 730, 806 |
| BshNI | GGYRCC | 2 cut(s) | 142, 211 |
| BsiSI | CCGG | 8 cut(s) | 20, 146, 270, 543, 549, 578, 682, 822 |
| BslFI | GGGAC | 2 cut(s) | 53, 548 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 343, 795 |
| BsmAI | GTCTC | 2 cut(s) | 198, 226 |
| BsmFI | GGGAC | 2 cut(s) | 53, 548 |
| BsnI | GGCC | 3 cut(s) | 530, 730, 806 |
| Bsp143I | GATC | 7 cut(s) | 340, 384, 394, 463, 490, 586, 798 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 717 |
| BspACI | CCGC | 4 cut(s) | 573, 645, 759, 796 |
| BspANI | GGCC | 3 cut(s) | 530, 730, 806 |
| BspCNI | CTCAG | 4 cut(s) | 268, 394, 582, 709 |
| BspLI | GGNNCC | 4 cut(s) | 144, 213, 482, 547 |
| BspMI | ACCTGC | 1 cut(s) | 647 |
| BspPI | GGATC | 4 cut(s) | 348, 379, 594, 806 |
| BspQI | GCTCTTC | 1 cut(s) | 821 |
| BspT107I | GGYRCC | 2 cut(s) | 142, 211 |
| BsrBI | CCGCTC | 1 cut(s) | 573 |
| BsrDI | GCAATG | 1 cut(s) | 89 |
| BsrFI | RCCGGY | 1 cut(s) | 19 |
| BsrI | ACTGG | 2 cut(s) | 448, 502 |
| BssAI | RCCGGY | 1 cut(s) | 19 |
| BssECI | CCNNGG | 2 cut(s) | 361, 531 |
| BssMI | GATC | 7 cut(s) | 340, 384, 394, 463, 490, 586, 798 |
| Bst2UI | CCWGG | 3 cut(s) | 198, 338, 532 |
| Bst4CI | ACNGT | 1 cut(s) | 775 |
| Bst6I | CTCTTC | 1 cut(s) | 821 |
| BstDEI | CTNAG | 5 cut(s) | 129, 276, 381, 590, 717 |
| BstDSI | CCRYGG | 1 cut(s) | 361 |
| BstF5I | GGATG | 2 cut(s) | 318, 373 |
| BstH2I | RGCGCY | 1 cut(s) | 724 |
| BstHHI | GCGC | 1 cut(s) | 723 |
| BstKTI | GATC | 7 cut(s) | 343, 387, 397, 466, 493, 589, 801 |
| BstMAI | GTCTC | 2 cut(s) | 198, 226 |
| BstMBI | GATC | 7 cut(s) | 340, 384, 394, 463, 490, 586, 798 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 662, 727 |
| BstNI | CCWGG | 3 cut(s) | 198, 338, 532 |
| BstSCI | CCNGG | 3 cut(s) | 196, 336, 530 |
| BstV1I | GCAGC | 3 cut(s) | 615, 674, 700 |
| BstX2I | RGATCY | 4 cut(s) | 384, 463, 586, 798 |
| BstYI | RGATCY | 4 cut(s) | 384, 463, 586, 798 |
| BsuRI | GGCC | 3 cut(s) | 530, 730, 806 |
| BtgI | CCRYGG | 1 cut(s) | 361 |
| BtrI | CACGTC | 1 cut(s) | 406 |
| BtsCI | GGATG | 2 cut(s) | 318, 373 |
| BtsIMutI | CAGTG | 3 cut(s) | 629, 760, 771 |
| BveI | ACCTGC | 1 cut(s) | 647 |
| CfoI | GCGC | 1 cut(s) | 723 |
| Cfr10I | RCCGGY | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 2 cut(s) | 575, 804 |
| CpoI | CGGWCCG | 1 cut(s) | 575 |
| CseI | GACGC | 1 cut(s) | 595 |
| Csp6I | GTAC | 2 cut(s) | 143, 419 |
| CspI | CGGWCCG | 1 cut(s) | 575 |
| CviAII | CATG | 2 cut(s) | 51, 323 |
| CviQI | GTAC | 2 cut(s) | 143, 419 |
| DdeI | CTNAG | 5 cut(s) | 129, 276, 381, 590, 717 |
| DpnI | GATC | 7 cut(s) | 342, 386, 396, 465, 492, 588, 800 |
| DpnII | GATC | 7 cut(s) | 340, 384, 394, 463, 490, 586, 798 |
| DraIII | CACNNNGTG | 1 cut(s) | 53 |
| Eam1104I | CTCTTC | 1 cut(s) | 821 |
| EarI | CTCTTC | 1 cut(s) | 821 |
| EciI | GGCGGA | 1 cut(s) | 811 |
| Eco147I | AGGCCT | 1 cut(s) | 730 |
| Eco47I | GGWCC | 1 cut(s) | 575 |
| Eco47III | AGCGCT | 1 cut(s) | 722 |
| Eco57I | CTGAAG | 2 cut(s) | 653, 736 |
| EcoRI | GAATTC | 1 cut(s) | 696 |
| EcoRII | CCWGG | 3 cut(s) | 196, 336, 530 |
| FaeI | CATG | 2 cut(s) | 54, 326 |
| FaqI | GGGAC | 2 cut(s) | 53, 548 |
| FatI | CATG | 2 cut(s) | 50, 322 |
| FauNDI | CATATG | 1 cut(s) | 839 |
| Fnu4HI | GCNGC | 3 cut(s) | 604, 663, 714 |
| FokI | GGATG | 2 cut(s) | 305, 380 |
| Fsp4HI | GCNGC | 3 cut(s) | 604, 663, 714 |
| FspBI | CTAG | 1 cut(s) | 701 |
| GlaI | GCGC | 1 cut(s) | 722 |
| GluI | GCNGC | 3 cut(s) | 604, 663, 714 |
| GsaI | CCCAGC | 1 cut(s) | 182 |
| GsuI | CTGGAG | 2 cut(s) | 485, 745 |
| HaeII | RGCGCY | 1 cut(s) | 724 |
| HaeIII | GGCC | 3 cut(s) | 530, 730, 806 |
| HapII | CCGG | 8 cut(s) | 20, 146, 270, 543, 549, 578, 682, 822 |
| HgaI | GACGC | 1 cut(s) | 595 |
| HhaI | GCGC | 1 cut(s) | 723 |
| Hin1II | CATG | 2 cut(s) | 54, 326 |
| Hin6I | GCGC | 1 cut(s) | 721 |
| HinP1I | GCGC | 1 cut(s) | 721 |
| HindIII | AAGCTT | 1 cut(s) | 74 |
| HinfI | GANTC | 3 cut(s) | 191, 648, 672 |
| HpaII | CCGG | 8 cut(s) | 20, 146, 270, 543, 549, 578, 682, 822 |
| HphI | GGTGA | 4 cut(s) | 51, 245, 350, 592 |
| Hpy188I | TCNGA | 9 cut(s) | 117, 384, 394, 401, 508, 591, 598, 653, 671 |
| Hpy188III | TCNNGA | 2 cut(s) | 494, 784 |
| Hpy99I | CGWCG | 4 cut(s) | 410, 419, 480, 611 |
| HpyAV | CCTTC | 3 cut(s) | 133, 276, 760 |
| HpyCH4III | ACNGT | 1 cut(s) | 775 |
| HpyCH4IV | ACGT | 1 cut(s) | 405 |
| HpyCH4V | TGCA | 5 cut(s) | 56, 371, 459, 603, 662 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 662, 727 |
| HpyF3I | CTNAG | 5 cut(s) | 129, 276, 381, 590, 717 |
| HpySE526I | ACGT | 1 cut(s) | 405 |
| Hsp92II | CATG | 2 cut(s) | 54, 326 |
| HspAI | GCGC | 1 cut(s) | 721 |
| KpnI | GGTACC | 1 cut(s) | 146 |
| Kzo9I | GATC | 7 cut(s) | 340, 384, 394, 463, 490, 586, 798 |
| LguI | GCTCTTC | 1 cut(s) | 821 |
| LmnI | GCTCC | 3 cut(s) | 486, 545, 653 |
| Lsp1109I | GCAGC | 3 cut(s) | 615, 674, 700 |
| LweI | GCATC | 2 cut(s) | 65, 358 |
| MaeI | CTAG | 1 cut(s) | 701 |
| MaeII | ACGT | 1 cut(s) | 405 |
| MaeIII | GTNAC | 1 cut(s) | 32 |
| MalI | GATC | 7 cut(s) | 342, 386, 396, 465, 492, 588, 800 |
| MbiI | CCGCTC | 1 cut(s) | 573 |
| MboI | GATC | 7 cut(s) | 340, 384, 394, 463, 490, 586, 798 |
| MboII | GAAGA | 4 cut(s) | 23, 437, 553, 808 |
| MflI | RGATCY | 4 cut(s) | 384, 463, 586, 798 |
| MluCI | AATT | 4 cut(s) | 161, 485, 565, 696 |
| MlyI | GAGTC | 3 cut(s) | 200, 657, 681 |
| MmeI | TCCRAC | 1 cut(s) | 631 |
| MseI | TTAA | 2 cut(s) | 375, 686 |
| MslI | CAYNNNNRTG | 1 cut(s) | 366 |
| MspI | CCGG | 8 cut(s) | 20, 146, 270, 543, 549, 578, 682, 822 |
| MspR9I | CCNGG | 3 cut(s) | 198, 338, 532 |
| MvaI | CCWGG | 3 cut(s) | 198, 338, 532 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 662, 727 |
| NdeI | CATATG | 1 cut(s) | 839 |
| NdeII | GATC | 7 cut(s) | 340, 384, 394, 463, 490, 586, 798 |
| NlaIII | CATG | 2 cut(s) | 54, 326 |
| NlaIV | GGNNCC | 4 cut(s) | 144, 213, 482, 547 |
| NmuCI | GTSAC | 1 cut(s) | 32 |
| PaqCI | CACCTGC | 1 cut(s) | 647 |
| PceI | AGGCCT | 1 cut(s) | 730 |
| PciSI | GCTCTTC | 1 cut(s) | 821 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 349, 411, 414, 420 |
| PfoI | TCCNGGA | 1 cut(s) | 336 |
| PkrI | GCNGC | 3 cut(s) | 605, 664, 715 |
| PleI | GAGTC | 3 cut(s) | 199, 656, 680 |
| PpsI | GAGTC | 3 cut(s) | 199, 656, 680 |
| Psp6I | CCWGG | 3 cut(s) | 196, 336, 530 |
| PspFI | CCCAGC | 1 cut(s) | 178 |
| PspGI | CCWGG | 3 cut(s) | 196, 336, 530 |
| PspN4I | GGNNCC | 4 cut(s) | 144, 213, 482, 547 |
| PspPI | GGNCC | 2 cut(s) | 575, 804 |
| PsuI | RGATCY | 4 cut(s) | 384, 463, 586, 798 |
| RsaI | GTAC | 2 cut(s) | 144, 420 |
| RsaNI | GTAC | 2 cut(s) | 143, 419 |
| RseI | CAYNNNNRTG | 1 cut(s) | 366 |
| Rsr2I | CGGWCCG | 1 cut(s) | 575 |
| RsrII | CGGWCCG | 1 cut(s) | 575 |
| SapI | GCTCTTC | 1 cut(s) | 821 |
| SaqAI | TTAA | 2 cut(s) | 375, 686 |
| SatI | GCNGC | 3 cut(s) | 604, 663, 714 |
| Sau3AI | GATC | 7 cut(s) | 340, 384, 394, 463, 490, 586, 798 |
| Sau96I | GGNCC | 2 cut(s) | 575, 804 |
| SchI | GAGTC | 3 cut(s) | 200, 657, 681 |
| ScrFI | CCNGG | 3 cut(s) | 198, 338, 532 |
| SfaNI | GCATC | 2 cut(s) | 65, 358 |
| SinI | GGWCC | 1 cut(s) | 575 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 366 |
| SmlI | CTYRAG | 1 cut(s) | 515 |
| SmoI | CTYRAG | 1 cut(s) | 515 |
| Sse9I | AATT | 4 cut(s) | 161, 485, 565, 696 |
| SseBI | AGGCCT | 1 cut(s) | 730 |
| SsiI | CCGC | 4 cut(s) | 573, 645, 759, 796 |
| SspMI | CTAG | 1 cut(s) | 701 |
| StuI | AGGCCT | 1 cut(s) | 730 |
| StyD4I | CCNGG | 3 cut(s) | 196, 336, 530 |
| TaaI | ACNGT | 1 cut(s) | 775 |
| TaiI | ACGT | 1 cut(s) | 408 |
| TaqI | TCGA | 7 cut(s) | 292, 423, 475, 489, 609, 675, 733 |
| TasI | AATT | 4 cut(s) | 161, 485, 565, 696 |
| Tru1I | TTAA | 2 cut(s) | 375, 686 |
| Tru9I | TTAA | 2 cut(s) | 375, 686 |
| TscAI | CASTG | 3 cut(s) | 636, 760, 778 |
| TseFI | GTSAC | 1 cut(s) | 32 |
| TseI | GCWGC | 3 cut(s) | 603, 662, 713 |
| Tsp45I | GTSAC | 1 cut(s) | 32 |
| TspDTI | ATGAA | 4 cut(s) | 78, 86, 339, 767 |
| TspGWI | ACGGA | 2 cut(s) | 157, 341 |
| TspRI | CASTG | 3 cut(s) | 636, 760, 778 |
| VpaK11BI | GGWCC | 1 cut(s) | 575 |
| XapI | RAATTY | 2 cut(s) | 161, 696 |
| XspI | CTAG | 1 cut(s) | 701 |