ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1177 |
| AccBSI | CCGCTC | 1 cut(s) | 76 |
| AccII | CGCG | 1 cut(s) | 955 |
| AciI | CCGC | 6 cut(s) | 74, 117, 269, 539, 587, 991 |
| AclI | AACGTT | 1 cut(s) | 908 |
| AclWI | GGATC | 1 cut(s) | 476 |
| AcoI | YGGCCR | 1 cut(s) | 261 |
| AcsI | RAATTY | 2 cut(s) | 1202, 1214 |
| AcuI | CTGAAG | 2 cut(s) | 89, 701 |
| AfaI | GTAC | 3 cut(s) | 109, 361, 1197 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 101, 104 |
| AflII | CTTAAG | 1 cut(s) | 742 |
| AgsI | TTSAA | 4 cut(s) | 220, 439, 1067, 1192 |
| AluBI | AGCT | 3 cut(s) | 446, 988, 1167 |
| AluI | AGCT | 3 cut(s) | 446, 988, 1167 |
| Alw26I | GTCTC | 1 cut(s) | 1148 |
| AlwI | GGATC | 1 cut(s) | 476 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 194, 762 |
| AoxI | GGCC | 5 cut(s) | 118, 261, 425, 1093, 1097 |
| ApeKI | GCWGC | 2 cut(s) | 51, 830 |
| ApoI | RAATTY | 2 cut(s) | 1202, 1214 |
| AspLEI | GCGC | 3 cut(s) | 237, 955, 957 |
| AspS9I | GGNCC | 3 cut(s) | 119, 425, 1057 |
| AsuHPI | GGTGA | 2 cut(s) | 1096, 1163 |
| AsuII | TTCGAA | 1 cut(s) | 839 |
| AsuNHI | GCTAGC | 1 cut(s) | 1163 |
| AvaII | GGWCC | 1 cut(s) | 1057 |
| BaeGI | GKGCMC | 1 cut(s) | 1182 |
| BalI | TGGCCA | 1 cut(s) | 263 |
| BanI | GGYRCC | 1 cut(s) | 1177 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 587, 619 |
| BbsI | GAAGAC | 2 cut(s) | 848, 1023 |
| BbvI | GCAGC | 2 cut(s) | 63, 817 |
| BccI | CCATC | 3 cut(s) | 329, 464, 774 |
| BciVI | GTATCC | 1 cut(s) | 545 |
| BcoDI | GTCTC | 1 cut(s) | 1148 |
| BfaI | CTAG | 4 cut(s) | 87, 548, 1164, 1231 |
| BfoI | RGCGCY | 1 cut(s) | 238 |
| BfrI | CTTAAG | 1 cut(s) | 742 |
| BfuI | GTATCC | 1 cut(s) | 545 |
| BglII | AGATCT | 1 cut(s) | 298 |
| BisI | GCNGC | 4 cut(s) | 52, 74, 118, 831 |
| BlsI | GCNGC | 4 cut(s) | 53, 75, 119, 832 |
| Bme18I | GGWCC | 1 cut(s) | 1057 |
| BmgT120I | GGNCC | 3 cut(s) | 119, 425, 1057 |
| BmiI | GGNNCC | 3 cut(s) | 340, 1059, 1179 |
| BmrI | ACTGGG | 2 cut(s) | 870, 941 |
| BmsI | GCATC | 1 cut(s) | 796 |
| BmtI | GCTAGC | 1 cut(s) | 1167 |
| BmuI | ACTGGG | 2 cut(s) | 870, 941 |
| BpiI | GAAGAC | 2 cut(s) | 848, 1023 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 221, 253 |
| Bpu10I | CCTNAGC | 1 cut(s) | 184 |
| Bpu14I | TTCGAA | 1 cut(s) | 839 |
| BpuEI | CTTGAG | 2 cut(s) | 279, 1042 |
| BsaJI | CCNNGG | 4 cut(s) | 428, 784, 1053, 1080 |
| BsaWI | WCCGGW | 1 cut(s) | 448 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 101, 104 |
| Bse118I | RCCGGY | 1 cut(s) | 1095 |
| Bse1I | ACTGG | 3 cut(s) | 834, 876, 947 |
| BseDI | CCNNGG | 4 cut(s) | 428, 784, 1053, 1080 |
| BseGI | GGATG | 3 cut(s) | 173, 863, 1115 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 101, 104 |
| BseMII | CTCAG | 2 cut(s) | 260, 502 |
| BseNI | ACTGG | 3 cut(s) | 834, 876, 947 |
| BsePI | GCGCGC | 1 cut(s) | 953 |
| BseRI | GAGGAG | 2 cut(s) | 84, 87 |
| BseSI | GKGCMC | 1 cut(s) | 1182 |
| BseXI | GCAGC | 2 cut(s) | 63, 817 |
| BsgI | GTGCAG | 1 cut(s) | 70 |
| Bsh1236I | CGCG | 1 cut(s) | 955 |
| BshFI | GGCC | 5 cut(s) | 120, 263, 427, 1095, 1099 |
| BshNI | GGYRCC | 1 cut(s) | 1177 |
| BsiSI | CCGG | 2 cut(s) | 449, 1096 |
| BslFI | GGGAC | 2 cut(s) | 773, 1043 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 101, 104 |
| BsmAI | GTCTC | 1 cut(s) | 1148 |
| BsmFI | GGGAC | 2 cut(s) | 773, 1043 |
| BsmI | GAATGC | 1 cut(s) | 492 |
| BsnI | GGCC | 5 cut(s) | 120, 263, 427, 1095, 1099 |
| Bsp119I | TTCGAA | 1 cut(s) | 839 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1182 |
| Bsp143I | GATC | 3 cut(s) | 298, 367, 481 |
| Bsp19I | CCATGG | 1 cut(s) | 428 |
| BspACI | CCGC | 6 cut(s) | 74, 117, 269, 539, 587, 991 |
| BspANI | GGCC | 5 cut(s) | 120, 263, 427, 1095, 1099 |
| BspCNI | CTCAG | 2 cut(s) | 259, 501 |
| BspFNI | CGCG | 1 cut(s) | 955 |
| BspHI | TCATGA | 3 cut(s) | 567, 778, 978 |
| BspLI | GGNNCC | 3 cut(s) | 340, 1059, 1179 |
| BspOI | GCTAGC | 1 cut(s) | 1167 |
| BspPI | GGATC | 1 cut(s) | 476 |
| BspQI | GCTCTTC | 2 cut(s) | 515, 894 |
| BspT104I | TTCGAA | 1 cut(s) | 839 |
| BspT107I | GGYRCC | 1 cut(s) | 1177 |
| BspTI | CTTAAG | 1 cut(s) | 742 |
| BsrBI | CCGCTC | 1 cut(s) | 76 |
| BsrFI | RCCGGY | 1 cut(s) | 1095 |
| BsrI | ACTGG | 3 cut(s) | 834, 876, 947 |
| BssAI | RCCGGY | 1 cut(s) | 1095 |
| BssECI | CCNNGG | 4 cut(s) | 428, 784, 1053, 1080 |
| BssHII | GCGCGC | 1 cut(s) | 953 |
| BssMI | GATC | 3 cut(s) | 298, 367, 481 |
| BssT1I | CCWWGG | 4 cut(s) | 428, 784, 1053, 1080 |
| Bst4CI | ACNGT | 3 cut(s) | 104, 817, 1159 |
| Bst6I | CTCTTC | 3 cut(s) | 515, 677, 894 |
| BstAFI | CTTAAG | 1 cut(s) | 742 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 762 |
| BstBI | TTCGAA | 1 cut(s) | 839 |
| BstC8I | GCNNGC | 6 cut(s) | 190, 543, 955, 995, 1097, 1165 |
| BstDEI | CTNAG | 3 cut(s) | 184, 246, 488 |
| BstDSI | CCRYGG | 1 cut(s) | 428 |
| BstF5I | GGATG | 3 cut(s) | 173, 863, 1115 |
| BstFNI | CGCG | 1 cut(s) | 955 |
| BstH2I | RGCGCY | 1 cut(s) | 238 |
| BstHHI | GCGC | 3 cut(s) | 237, 955, 957 |
| BstKTI | GATC | 3 cut(s) | 301, 370, 484 |
| BstMAI | GTCTC | 1 cut(s) | 1148 |
| BstMBI | GATC | 3 cut(s) | 298, 367, 481 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 584, 762, 994, 1105 |
| BstSLI | GKGCMC | 1 cut(s) | 1182 |
| BstUI | CGCG | 1 cut(s) | 955 |
| BstV1I | GCAGC | 2 cut(s) | 63, 817 |
| BstV2I | GAAGAC | 2 cut(s) | 848, 1023 |
| BstX2I | RGATCY | 2 cut(s) | 298, 481 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 221 |
| BstYI | RGATCY | 2 cut(s) | 298, 481 |
| BsuI | GTATCC | 1 cut(s) | 545 |
| BsuRI | GGCC | 5 cut(s) | 120, 263, 427, 1095, 1099 |
| BtgI | CCRYGG | 1 cut(s) | 428 |
| BtgZI | GCGATG | 1 cut(s) | 1089 |
| BtsCI | GGATG | 3 cut(s) | 173, 863, 1115 |
| BtsIMutI | CAGTG | 1 cut(s) | 330 |
| Cac8I | GCNNGC | 6 cut(s) | 190, 543, 955, 995, 1097, 1165 |
| CaiI | CAGNNNCTG | 2 cut(s) | 194, 762 |
| CciI | TCATGA | 3 cut(s) | 567, 778, 978 |
| CfoI | GCGC | 3 cut(s) | 237, 955, 957 |
| Cfr10I | RCCGGY | 1 cut(s) | 1095 |
| Cfr13I | GGNCC | 3 cut(s) | 119, 425, 1057 |
| Csp6I | GTAC | 3 cut(s) | 108, 360, 1196 |
| CviAII | CATG | 7 cut(s) | 429, 499, 568, 656, 779, 821, 979 |
| CviQI | GTAC | 3 cut(s) | 108, 360, 1196 |
| DdeI | CTNAG | 3 cut(s) | 184, 246, 488 |
| DpnI | GATC | 3 cut(s) | 300, 369, 483 |
| DpnII | GATC | 3 cut(s) | 298, 367, 481 |
| DraI | TTTAAA | 1 cut(s) | 417 |
| EaeI | YGGCCR | 1 cut(s) | 261 |
| Eam1104I | CTCTTC | 3 cut(s) | 515, 677, 894 |
| EarI | CTCTTC | 3 cut(s) | 515, 677, 894 |
| Eco130I | CCWWGG | 4 cut(s) | 428, 784, 1053, 1080 |
| Eco47I | GGWCC | 1 cut(s) | 1057 |
| Eco57I | CTGAAG | 2 cut(s) | 89, 701 |
| EcoRI | GAATTC | 1 cut(s) | 1202 |
| EcoT14I | CCWWGG | 4 cut(s) | 428, 784, 1053, 1080 |
| ErhI | CCWWGG | 4 cut(s) | 428, 784, 1053, 1080 |
| FaeI | CATG | 7 cut(s) | 432, 502, 571, 659, 782, 824, 982 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 288, 320 |
| FaqI | GGGAC | 2 cut(s) | 773, 1043 |
| FatI | CATG | 7 cut(s) | 428, 498, 567, 655, 778, 820, 978 |
| FauI | CCCGC | 2 cut(s) | 546, 580 |
| FauNDI | CATATG | 1 cut(s) | 323 |
| Fnu4HI | GCNGC | 4 cut(s) | 52, 74, 118, 831 |
| FokI | GGATG | 3 cut(s) | 160, 850, 1102 |
| FseI | GGCCGGCC | 1 cut(s) | 1099 |
| Fsp4HI | GCNGC | 4 cut(s) | 52, 74, 118, 831 |
| FspBI | CTAG | 4 cut(s) | 87, 548, 1164, 1231 |
| GlaI | GCGC | 3 cut(s) | 236, 954, 956 |
| GluI | GCNGC | 4 cut(s) | 52, 74, 118, 831 |
| HaeII | RGCGCY | 1 cut(s) | 238 |
| HaeIII | GGCC | 5 cut(s) | 120, 263, 427, 1095, 1099 |
| HapII | CCGG | 2 cut(s) | 449, 1096 |
| HhaI | GCGC | 3 cut(s) | 237, 955, 957 |
| Hin1II | CATG | 7 cut(s) | 432, 502, 571, 659, 782, 824, 982 |
| Hin6I | GCGC | 3 cut(s) | 235, 953, 955 |
| HinP1I | GCGC | 3 cut(s) | 235, 953, 955 |
| HincII | GTYRAC | 1 cut(s) | 205 |
| HindII | GTYRAC | 1 cut(s) | 205 |
| HinfI | GANTC | 6 cut(s) | 11, 64, 318, 502, 688, 1073 |
| HpaII | CCGG | 2 cut(s) | 449, 1096 |
| HphI | GGTGA | 2 cut(s) | 1096, 1163 |
| Hpy166II | GTNNAC | 4 cut(s) | 110, 127, 205, 646 |
| Hpy188I | TCNGA | 5 cut(s) | 16, 69, 196, 317, 681 |
| Hpy188III | TCNNGA | 6 cut(s) | 296, 353, 568, 599, 779, 979 |
| Hpy8I | GTNNAC | 4 cut(s) | 110, 127, 205, 646 |
| Hpy99I | CGWCG | 1 cut(s) | 155 |
| HpyAV | CCTTC | 1 cut(s) | 388 |
| HpyCH4III | ACNGT | 3 cut(s) | 104, 817, 1159 |
| HpyCH4IV | ACGT | 5 cut(s) | 140, 153, 397, 648, 908 |
| HpyCH4V | TGCA | 7 cut(s) | 33, 51, 132, 478, 756, 820, 1009 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 584, 762, 994, 1105 |
| HpyF3I | CTNAG | 3 cut(s) | 184, 246, 488 |
| HpySE526I | ACGT | 5 cut(s) | 140, 153, 397, 648, 908 |
| Hsp92II | CATG | 7 cut(s) | 432, 502, 571, 659, 782, 824, 982 |
| HspAI | GCGC | 3 cut(s) | 235, 953, 955 |
| KroI | GCCGGC | 1 cut(s) | 1095 |
| KroNI | GCCGGC | 1 cut(s) | 1097 |
| Kzo9I | GATC | 3 cut(s) | 298, 367, 481 |
| LguI | GCTCTTC | 2 cut(s) | 515, 894 |
| LmnI | GCTCC | 4 cut(s) | 81, 338, 451, 993 |
| Lsp1109I | GCAGC | 2 cut(s) | 63, 817 |
| LweI | GCATC | 1 cut(s) | 796 |
| MaeI | CTAG | 4 cut(s) | 87, 548, 1164, 1231 |
| MaeII | ACGT | 5 cut(s) | 140, 153, 397, 648, 908 |
| MaeIII | GTNAC | 3 cut(s) | 154, 328, 398 |
| MalI | GATC | 3 cut(s) | 300, 369, 483 |
| MbiI | CCGCTC | 1 cut(s) | 76 |
| MboI | GATC | 3 cut(s) | 298, 367, 481 |
| MboII | GAAGA | 7 cut(s) | 502, 505, 563, 694, 853, 881, 1028 |
| MflI | RGATCY | 2 cut(s) | 298, 481 |
| MhlI | GDGCHC | 1 cut(s) | 1182 |
| MlsI | TGGCCA | 1 cut(s) | 263 |
| MluCI | AATT | 6 cut(s) | 636, 720, 869, 1187, 1202, 1214 |
| MluNI | TGGCCA | 1 cut(s) | 263 |
| MlyI | GAGTC | 5 cut(s) | 5, 58, 312, 682, 1082 |
| Mox20I | TGGCCA | 1 cut(s) | 263 |
| MroNI | GCCGGC | 1 cut(s) | 1095 |
| MscI | TGGCCA | 1 cut(s) | 263 |
| MseI | TTAA | 5 cut(s) | 345, 416, 743, 1041, 1143 |
| MslI | CAYNNNNRTG | 3 cut(s) | 219, 497, 1032 |
| Msp20I | TGGCCA | 1 cut(s) | 263 |
| MspA1I | CMGCKG | 1 cut(s) | 271 |
| MspCI | CTTAAG | 1 cut(s) | 742 |
| MspI | CCGG | 2 cut(s) | 449, 1096 |
| Mva1269I | GAATGC | 1 cut(s) | 492 |
| MvnI | CGCG | 1 cut(s) | 955 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 584, 762, 994, 1105 |
| NaeI | GCCGGC | 1 cut(s) | 1097 |
| NcoI | CCATGG | 1 cut(s) | 428 |
| NdeI | CATATG | 1 cut(s) | 323 |
| NdeII | GATC | 3 cut(s) | 298, 367, 481 |
| NgoMIV | GCCGGC | 1 cut(s) | 1095 |
| NheI | GCTAGC | 1 cut(s) | 1163 |
| NlaIII | CATG | 7 cut(s) | 432, 502, 571, 659, 782, 824, 982 |
| NlaIV | GGNNCC | 3 cut(s) | 340, 1059, 1179 |
| NmuCI | GTSAC | 2 cut(s) | 328, 398 |
| NspV | TTCGAA | 1 cut(s) | 839 |
| PagI | TCATGA | 3 cut(s) | 567, 778, 978 |
| PauI | GCGCGC | 1 cut(s) | 953 |
| PciSI | GCTCTTC | 2 cut(s) | 515, 894 |
| PctI | GAATGC | 1 cut(s) | 492 |
| PdiI | GCCGGC | 1 cut(s) | 1097 |
| PfeI | GAWTC | 1 cut(s) | 502 |
| PkrI | GCNGC | 4 cut(s) | 53, 75, 119, 832 |
| PleI | GAGTC | 5 cut(s) | 5, 58, 312, 682, 1081 |
| PpsI | GAGTC | 5 cut(s) | 5, 58, 312, 682, 1081 |
| Psp1406I | AACGTT | 1 cut(s) | 908 |
| PspN4I | GGNNCC | 3 cut(s) | 340, 1059, 1179 |
| PspPI | GGNCC | 3 cut(s) | 119, 425, 1057 |
| PstNI | CAGNNNCTG | 2 cut(s) | 194, 762 |
| PsuI | RGATCY | 2 cut(s) | 298, 481 |
| PteI | GCGCGC | 1 cut(s) | 953 |
| RigI | GGCCGGCC | 1 cut(s) | 1099 |
| RsaI | GTAC | 3 cut(s) | 109, 361, 1197 |
| RsaNI | GTAC | 3 cut(s) | 108, 360, 1196 |
| RseI | CAYNNNNRTG | 3 cut(s) | 219, 497, 1032 |
| SapI | GCTCTTC | 2 cut(s) | 515, 894 |
| SaqAI | TTAA | 5 cut(s) | 345, 416, 743, 1041, 1143 |
| SatI | GCNGC | 4 cut(s) | 52, 74, 118, 831 |
| Sau3AI | GATC | 3 cut(s) | 298, 367, 481 |
| Sau96I | GGNCC | 3 cut(s) | 119, 425, 1057 |
| SchI | GAGTC | 5 cut(s) | 5, 58, 312, 682, 1082 |
| SduI | GDGCHC | 1 cut(s) | 1182 |
| SfaNI | GCATC | 1 cut(s) | 796 |
| SfuI | TTCGAA | 1 cut(s) | 839 |
| SinI | GGWCC | 1 cut(s) | 1057 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 219, 497, 1032 |
| SmlI | CTYRAG | 3 cut(s) | 294, 742, 1021 |
| SmoI | CTYRAG | 3 cut(s) | 294, 742, 1021 |
| Sse9I | AATT | 6 cut(s) | 636, 720, 869, 1187, 1202, 1214 |
| SsiI | CCGC | 6 cut(s) | 74, 117, 269, 539, 587, 991 |
| SspMI | CTAG | 4 cut(s) | 87, 548, 1164, 1231 |
| StyI | CCWWGG | 4 cut(s) | 428, 784, 1053, 1080 |
| TaaI | ACNGT | 3 cut(s) | 104, 817, 1159 |
| TaiI | ACGT | 5 cut(s) | 143, 156, 400, 651, 911 |
| TaqI | TCGA | 2 cut(s) | 606, 839 |
| TaqII | GACCGA | 1 cut(s) | 417 |
| TasI | AATT | 6 cut(s) | 636, 720, 869, 1187, 1202, 1214 |
| TauI | GCSGC | 2 cut(s) | 76, 120 |
| TfiI | GAWTC | 1 cut(s) | 502 |
| Tru1I | TTAA | 5 cut(s) | 345, 416, 743, 1041, 1143 |
| Tru9I | TTAA | 5 cut(s) | 345, 416, 743, 1041, 1143 |
| TscAI | CASTG | 1 cut(s) | 337 |
| TseFI | GTSAC | 2 cut(s) | 328, 398 |
| TseI | GCWGC | 2 cut(s) | 51, 830 |
| Tsp45I | GTSAC | 2 cut(s) | 328, 398 |
| TspDTI | ATGAA | 7 cut(s) | 15, 407, 515, 584, 767, 837, 995 |
| TspRI | CASTG | 1 cut(s) | 337 |
| Vha464I | CTTAAG | 1 cut(s) | 742 |
| VpaK11BI | GGWCC | 1 cut(s) | 1057 |
| XapI | RAATTY | 2 cut(s) | 1202, 1214 |
| XspI | CTAG | 4 cut(s) | 87, 548, 1164, 1231 |