ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 106 |
| AciI | CCGC | 2 cut(s) | 85, 100 |
| AclWI | GGATC | 2 cut(s) | 482, 652 |
| AcsI | RAATTY | 2 cut(s) | 256, 301 |
| AfaI | GTAC | 1 cut(s) | 31 |
| AgsI | TTSAA | 1 cut(s) | 655 |
| AjnI | CCWGG | 1 cut(s) | 14 |
| AluBI | AGCT | 1 cut(s) | 281 |
| AluI | AGCT | 1 cut(s) | 281 |
| AlwI | GGATC | 2 cut(s) | 482, 652 |
| AoxI | GGCC | 1 cut(s) | 204 |
| ApeKI | GCWGC | 5 cut(s) | 55, 79, 82, 281, 617 |
| ApoI | RAATTY | 2 cut(s) | 256, 301 |
| AspLEI | GCGC | 1 cut(s) | 10 |
| AspS9I | GGNCC | 1 cut(s) | 551 |
| AsuC2I | CCSGG | 1 cut(s) | 549 |
| AsuHPI | GGTGA | 3 cut(s) | 4, 260, 537 |
| AvaII | GGWCC | 1 cut(s) | 551 |
| BbvCI | CCTCAGC | 1 cut(s) | 74 |
| BbvI | GCAGC | 5 cut(s) | 67, 91, 94, 268, 604 |
| BccI | CCATC | 3 cut(s) | 115, 347, 551 |
| BciT130I | CCWGG | 1 cut(s) | 16 |
| BciVI | GTATCC | 2 cut(s) | 382, 543 |
| BcnI | CCSGG | 1 cut(s) | 549 |
| BfaI | CTAG | 1 cut(s) | 33 |
| BfmI | CTRYAG | 1 cut(s) | 618 |
| BfuI | GTATCC | 2 cut(s) | 382, 543 |
| BisI | GCNGC | 5 cut(s) | 56, 80, 83, 282, 618 |
| BlsI | GCNGC | 5 cut(s) | 57, 81, 84, 283, 619 |
| Bme1390I | CCNGG | 2 cut(s) | 16, 549 |
| Bme18I | GGWCC | 1 cut(s) | 551 |
| BmgT120I | GGNCC | 1 cut(s) | 551 |
| BmiI | GGNNCC | 2 cut(s) | 129, 552 |
| BmrFI | CCNGG | 2 cut(s) | 16, 549 |
| BmsI | GCATC | 1 cut(s) | 410 |
| Bpu10I | CCTNAGC | 1 cut(s) | 74 |
| BpuEI | CTTGAG | 1 cut(s) | 131 |
| BpuMI | CCSGG | 1 cut(s) | 549 |
| Bse1I | ACTGG | 1 cut(s) | 646 |
| BseBI | CCWGG | 1 cut(s) | 16 |
| BseGI | GGATG | 3 cut(s) | 93, 352, 613 |
| BseMII | CTCAG | 3 cut(s) | 65, 456, 489 |
| BseNI | ACTGG | 1 cut(s) | 646 |
| BseRI | GAGGAG | 3 cut(s) | 515, 518, 558 |
| BseXI | GCAGC | 5 cut(s) | 67, 91, 94, 268, 604 |
| BshFI | GGCC | 1 cut(s) | 206 |
| BsiSI | CCGG | 1 cut(s) | 548 |
| BsnI | GGCC | 1 cut(s) | 206 |
| Bsp143I | GATC | 2 cut(s) | 487, 644 |
| BspACI | CCGC | 2 cut(s) | 85, 100 |
| BspANI | GGCC | 1 cut(s) | 206 |
| BspCNI | CTCAG | 3 cut(s) | 66, 457, 490 |
| BspLI | GGNNCC | 2 cut(s) | 129, 552 |
| BspMAI | CTGCAG | 1 cut(s) | 622 |
| BspPI | GGATC | 2 cut(s) | 482, 652 |
| BsrI | ACTGG | 1 cut(s) | 646 |
| BssMI | GATC | 2 cut(s) | 487, 644 |
| Bst2UI | CCWGG | 1 cut(s) | 16 |
| Bst6I | CTCTTC | 1 cut(s) | 195 |
| BstDEI | CTNAG | 4 cut(s) | 74, 225, 465, 498 |
| BstF5I | GGATG | 3 cut(s) | 93, 352, 613 |
| BstHHI | GCGC | 1 cut(s) | 10 |
| BstKTI | GATC | 2 cut(s) | 490, 647 |
| BstMBI | GATC | 2 cut(s) | 487, 644 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 79, 149 |
| BstNI | CCWGG | 1 cut(s) | 16 |
| BstSCI | CCNGG | 2 cut(s) | 14, 547 |
| BstSFI | CTRYAG | 1 cut(s) | 618 |
| BstV1I | GCAGC | 5 cut(s) | 67, 91, 94, 268, 604 |
| BstX2I | RGATCY | 1 cut(s) | 644 |
| BstYI | RGATCY | 1 cut(s) | 644 |
| BsuI | GTATCC | 2 cut(s) | 382, 543 |
| BsuRI | GGCC | 1 cut(s) | 206 |
| BtsCI | GGATG | 3 cut(s) | 93, 352, 613 |
| BtsI | GCAGTG | 2 cut(s) | 429, 612 |
| BtsIMutI | CAGTG | 2 cut(s) | 429, 612 |
| CfoI | GCGC | 1 cut(s) | 10 |
| Cfr13I | GGNCC | 1 cut(s) | 551 |
| Csp6I | GTAC | 1 cut(s) | 30 |
| CviAII | CATG | 2 cut(s) | 148, 453 |
| CviJI | RGCY | 6 cut(s) | 73, 143, 206, 224, 281, 451 |
| CviKI_1 | RGCY | 6 cut(s) | 73, 143, 206, 224, 281, 451 |
| CviQI | GTAC | 1 cut(s) | 30 |
| DdeI | CTNAG | 4 cut(s) | 74, 225, 465, 498 |
| DpnI | GATC | 2 cut(s) | 489, 646 |
| DpnII | GATC | 2 cut(s) | 487, 644 |
| Eam1104I | CTCTTC | 1 cut(s) | 195 |
| EarI | CTCTTC | 1 cut(s) | 195 |
| Eco147I | AGGCCT | 1 cut(s) | 206 |
| Eco47I | GGWCC | 1 cut(s) | 551 |
| EcoO109I | RGGNCCY | 1 cut(s) | 551 |
| EcoRI | GAATTC | 1 cut(s) | 256 |
| EcoRII | CCWGG | 1 cut(s) | 14 |
| FaeI | CATG | 2 cut(s) | 151, 456 |
| FaiI | YATR | 7 cut(s) | 6, 149, 392, 454, 493, 563, 639 |
| FatI | CATG | 2 cut(s) | 147, 452 |
| FblI | GTMKAC | 1 cut(s) | 106 |
| Fnu4HI | GCNGC | 5 cut(s) | 56, 80, 83, 282, 618 |
| FokI | GGATG | 3 cut(s) | 100, 359, 620 |
| Fsp4HI | GCNGC | 5 cut(s) | 56, 80, 83, 282, 618 |
| FspBI | CTAG | 1 cut(s) | 33 |
| GlaI | GCGC | 1 cut(s) | 9 |
| GluI | GCNGC | 5 cut(s) | 56, 80, 83, 282, 618 |
| HaeIII | GGCC | 1 cut(s) | 206 |
| HapII | CCGG | 1 cut(s) | 548 |
| HhaI | GCGC | 1 cut(s) | 10 |
| Hin1II | CATG | 2 cut(s) | 151, 456 |
| Hin6I | GCGC | 1 cut(s) | 8 |
| HinP1I | GCGC | 1 cut(s) | 8 |
| HinfI | GANTC | 2 cut(s) | 47, 593 |
| HpaII | CCGG | 1 cut(s) | 548 |
| HphI | GGTGA | 3 cut(s) | 4, 260, 537 |
| Hpy166II | GTNNAC | 2 cut(s) | 107, 396 |
| Hpy188I | TCNGA | 2 cut(s) | 466, 499 |
| Hpy188III | TCNNGA | 5 cut(s) | 385, 410, 526, 554, 625 |
| Hpy8I | GTNNAC | 2 cut(s) | 107, 396 |
| HpyCH4V | TGCA | 4 cut(s) | 284, 401, 620, 637 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 79, 149 |
| HpyF3I | CTNAG | 4 cut(s) | 74, 225, 465, 498 |
| Hsp92II | CATG | 2 cut(s) | 151, 456 |
| HspAI | GCGC | 1 cut(s) | 8 |
| Kzo9I | GATC | 2 cut(s) | 487, 644 |
| Lsp1109I | GCAGC | 5 cut(s) | 67, 91, 94, 268, 604 |
| LweI | GCATC | 1 cut(s) | 410 |
| MaeI | CTAG | 1 cut(s) | 33 |
| MaeIII | GTNAC | 3 cut(s) | 237, 457, 610 |
| MalI | GATC | 2 cut(s) | 489, 646 |
| MboI | GATC | 2 cut(s) | 487, 644 |
| MboII | GAAGA | 4 cut(s) | 31, 169, 212, 568 |
| MflI | RGATCY | 1 cut(s) | 644 |
| MluCI | AATT | 2 cut(s) | 256, 301 |
| MlyI | GAGTC | 1 cut(s) | 56 |
| MmeI | TCCRAC | 4 cut(s) | 24, 339, 560, 604 |
| MseI | TTAA | 1 cut(s) | 510 |
| MspA1I | CMGCKG | 1 cut(s) | 85 |
| MspI | CCGG | 1 cut(s) | 548 |
| MspR9I | CCNGG | 2 cut(s) | 16, 549 |
| MvaI | CCWGG | 1 cut(s) | 16 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 79, 149 |
| NciI | CCSGG | 1 cut(s) | 549 |
| NdeII | GATC | 2 cut(s) | 487, 644 |
| NlaIII | CATG | 2 cut(s) | 151, 456 |
| NlaIV | GGNNCC | 2 cut(s) | 129, 552 |
| NmuCI | GTSAC | 1 cut(s) | 610 |
| PceI | AGGCCT | 1 cut(s) | 206 |
| PfeI | GAWTC | 1 cut(s) | 593 |
| PkrI | GCNGC | 5 cut(s) | 57, 81, 84, 283, 619 |
| PleI | GAGTC | 1 cut(s) | 55 |
| PpsI | GAGTC | 1 cut(s) | 55 |
| PpuMI | RGGWCCY | 1 cut(s) | 551 |
| Psp5II | RGGWCCY | 1 cut(s) | 551 |
| Psp6I | CCWGG | 1 cut(s) | 14 |
| PspGI | CCWGG | 1 cut(s) | 14 |
| PspN4I | GGNNCC | 2 cut(s) | 129, 552 |
| PspPI | GGNCC | 1 cut(s) | 551 |
| PspPPI | RGGWCCY | 1 cut(s) | 551 |
| PstI | CTGCAG | 1 cut(s) | 622 |
| PsuI | RGATCY | 1 cut(s) | 644 |
| RsaI | GTAC | 1 cut(s) | 31 |
| RsaNI | GTAC | 1 cut(s) | 30 |
| SaqAI | TTAA | 1 cut(s) | 510 |
| SatI | GCNGC | 5 cut(s) | 56, 80, 83, 282, 618 |
| Sau3AI | GATC | 2 cut(s) | 487, 644 |
| Sau96I | GGNCC | 1 cut(s) | 551 |
| SchI | GAGTC | 1 cut(s) | 56 |
| ScrFI | CCNGG | 2 cut(s) | 16, 549 |
| SetI | ASST | 4 cut(s) | 99, 283, 464, 510 |
| SfaNI | GCATC | 1 cut(s) | 410 |
| SfcI | CTRYAG | 1 cut(s) | 618 |
| SinI | GGWCC | 1 cut(s) | 551 |
| SmlI | CTYRAG | 1 cut(s) | 110 |
| SmoI | CTYRAG | 1 cut(s) | 110 |
| Sse9I | AATT | 2 cut(s) | 256, 301 |
| SseBI | AGGCCT | 1 cut(s) | 206 |
| SsiI | CCGC | 2 cut(s) | 85, 100 |
| SspMI | CTAG | 1 cut(s) | 33 |
| StuI | AGGCCT | 1 cut(s) | 206 |
| StyD4I | CCNGG | 2 cut(s) | 14, 547 |
| TaqI | TCGA | 2 cut(s) | 321, 386 |
| TasI | AATT | 2 cut(s) | 256, 301 |
| TatI | WGTACW | 1 cut(s) | 29 |
| TfiI | GAWTC | 1 cut(s) | 593 |
| Tru1I | TTAA | 1 cut(s) | 510 |
| Tru9I | TTAA | 1 cut(s) | 510 |
| TscAI | CASTG | 2 cut(s) | 429, 619 |
| TseFI | GTSAC | 1 cut(s) | 610 |
| TseI | GCWGC | 5 cut(s) | 55, 79, 82, 281, 617 |
| Tsp45I | GTSAC | 1 cut(s) | 610 |
| TspDTI | ATGAA | 2 cut(s) | 136, 485 |
| TspGWI | ACGGA | 1 cut(s) | 310 |
| TspRI | CASTG | 2 cut(s) | 429, 619 |
| VpaK11BI | GGWCC | 1 cut(s) | 551 |
| XapI | RAATTY | 2 cut(s) | 256, 301 |
| XmiI | GTMKAC | 1 cut(s) | 106 |
| XspI | CTAG | 1 cut(s) | 33 |