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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 263, 789 |
| AciI | CCGC | 2 cut(s) | 261, 789 |
| AclWI | GGATC | 3 cut(s) | 636, 649, 1003 |
| AcoI | YGGCCR | 1 cut(s) | 396 |
| AcsI | RAATTY | 3 cut(s) | 587, 893, 1104 |
| AcuI | CTGAAG | 3 cut(s) | 744, 951, 1059 |
| AfaI | GTAC | 3 cut(s) | 213, 721, 730 |
| AfeI | AGCGCT | 1 cut(s) | 750 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 27, 117, 138, 306, 466, 548, 764 |
| AflIII | ACRYGT | 1 cut(s) | 62 |
| AgsI | TTSAA | 4 cut(s) | 47, 221, 764, 784 |
| AhlI | ACTAGT | 1 cut(s) | 731 |
| AjnI | CCWGG | 2 cut(s) | 385, 546 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 411, 443 |
| AluBI | AGCT | 5 cut(s) | 217, 379, 856, 926, 957 |
| AluI | AGCT | 5 cut(s) | 217, 379, 856, 926, 957 |
| Alw21I | GWGCWC | 1 cut(s) | 858 |
| Alw26I | GTCTC | 2 cut(s) | 147, 692 |
| AlwI | GGATC | 3 cut(s) | 636, 649, 1003 |
| Ama87I | CYCGRG | 1 cut(s) | 504 |
| Aor51HI | AGCGCT | 1 cut(s) | 750 |
| AoxI | GGCC | 3 cut(s) | 57, 396, 794 |
| ApeKI | GCWGC | 1 cut(s) | 68 |
| ApoI | RAATTY | 3 cut(s) | 587, 893, 1104 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 335, 542, 936 |
| AspLEI | GCGC | 4 cut(s) | 265, 525, 581, 751 |
| AsuC2I | CCSGG | 2 cut(s) | 28, 878 |
| AsuHPI | GGTGA | 3 cut(s) | 250, 480, 1042 |
| AsuII | TTCGAA | 1 cut(s) | 417 |
| AvaI | CYCGRG | 1 cut(s) | 504 |
| AxyI | CCTNAGG | 1 cut(s) | 948 |
| BamHI | GGATCC | 1 cut(s) | 641 |
| BanII | GRGCYC | 2 cut(s) | 858, 1082 |
| BbsI | GAAGAC | 1 cut(s) | 492 |
| Bbv12I | GWGCWC | 1 cut(s) | 858 |
| BbvI | GCAGC | 1 cut(s) | 55 |
| BccI | CCATC | 2 cut(s) | 182, 475 |
| BceAI | ACGGC | 1 cut(s) | 757 |
| BciT130I | CCWGG | 2 cut(s) | 387, 548 |
| BclI | TGATCA | 1 cut(s) | 282 |
| BcnI | CCSGG | 2 cut(s) | 28, 878 |
| BcoDI | GTCTC | 2 cut(s) | 147, 692 |
| BcuI | ACTAGT | 1 cut(s) | 731 |
| BfaI | CTAG | 7 cut(s) | 702, 732, 746, 752, 827, 992, 1083 |
| BfmI | CTRYAG | 1 cut(s) | 621 |
| BfoI | RGCGCY | 2 cut(s) | 582, 752 |
| BisI | GCNGC | 2 cut(s) | 69, 790 |
| BlsI | GCNGC | 2 cut(s) | 70, 791 |
| Bme1390I | CCNGG | 4 cut(s) | 28, 387, 548, 878 |
| BmeT110I | CYCGRG | 1 cut(s) | 504 |
| BmiI | GGNNCC | 3 cut(s) | 127, 162, 643 |
| BmrFI | CCNGG | 4 cut(s) | 28, 387, 548, 878 |
| BmsI | GCATC | 3 cut(s) | 434, 759, 845 |
| BpiI | GAAGAC | 1 cut(s) | 492 |
| BpmI | CTGGAG | 1 cut(s) | 408 |
| Bpu14I | TTCGAA | 1 cut(s) | 417 |
| BpuEI | CTTGAG | 1 cut(s) | 800 |
| BpuMI | CCSGG | 2 cut(s) | 28, 878 |
| BsaAI | YACGTR | 1 cut(s) | 629 |
| BsaI | GGTCTC | 1 cut(s) | 147 |
| BsaJI | CCNNGG | 3 cut(s) | 132, 168, 547 |
| BsaWI | WCCGGW | 1 cut(s) | 327 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 27, 117, 138, 306, 466, 548, 764 |
| Bse21I | CCTNAGG | 1 cut(s) | 948 |
| Bse3DI | GCAATG | 2 cut(s) | 300, 530 |
| BseBI | CCWGG | 2 cut(s) | 387, 548 |
| BseDI | CCNNGG | 3 cut(s) | 132, 168, 547 |
| BseGI | GGATG | 2 cut(s) | 174, 774 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 27, 117, 138, 306, 466, 548, 764 |
| BseMI | GCAATG | 2 cut(s) | 300, 530 |
| BseMII | CTCAG | 3 cut(s) | 158, 843, 1067 |
| BseRI | GAGGAG | 5 cut(s) | 4, 7, 10, 153, 192 |
| BseXI | GCAGC | 1 cut(s) | 55 |
| BseYI | CCCAGC | 2 cut(s) | 86, 305 |
| Bsh1236I | CGCG | 2 cut(s) | 263, 789 |
| BshFI | GGCC | 3 cut(s) | 59, 398, 796 |
| BsiHKAI | GWGCWC | 1 cut(s) | 858 |
| BsiHKCI | CYCGRG | 1 cut(s) | 504 |
| BsiSI | CCGG | 3 cut(s) | 27, 328, 878 |
| BslFI | GGGAC | 2 cut(s) | 860, 996 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 27, 117, 138, 306, 466, 548, 764 |
| BsmAI | GTCTC | 2 cut(s) | 147, 692 |
| BsmFI | GGGAC | 2 cut(s) | 860, 996 |
| BsmI | GAATGC | 2 cut(s) | 745, 936 |
| BsnI | GGCC | 3 cut(s) | 59, 398, 796 |
| Bso31I | GGTCTC | 1 cut(s) | 147 |
| BsoBI | CYCGRG | 1 cut(s) | 504 |
| Bsp119I | TTCGAA | 1 cut(s) | 417 |
| Bsp1286I | GDGCHC | 2 cut(s) | 858, 1082 |
| Bsp1407I | TGTACA | 1 cut(s) | 211 |
| Bsp143I | GATC | 3 cut(s) | 282, 641, 995 |
| BspACI | CCGC | 2 cut(s) | 261, 789 |
| BspANI | GGCC | 3 cut(s) | 59, 398, 796 |
| BspCNI | CTCAG | 3 cut(s) | 157, 844, 1068 |
| BspFNI | CGCG | 2 cut(s) | 263, 789 |
| BspHI | TCATGA | 1 cut(s) | 285 |
| BspLI | GGNNCC | 3 cut(s) | 127, 162, 643 |
| BspPI | GGATC | 3 cut(s) | 636, 649, 1003 |
| BspT104I | TTCGAA | 1 cut(s) | 417 |
| BspTNI | GGTCTC | 1 cut(s) | 147 |
| BsrDI | GCAATG | 2 cut(s) | 300, 530 |
| BsrGI | TGTACA | 1 cut(s) | 211 |
| BssECI | CCNNGG | 3 cut(s) | 132, 168, 547 |
| BssMI | GATC | 3 cut(s) | 282, 641, 995 |
| BssT1I | CCWWGG | 1 cut(s) | 132 |
| Bst2UI | CCWGG | 2 cut(s) | 387, 548 |
| Bst6I | CTCTTC | 2 cut(s) | 28, 264 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 444 |
| BstAUI | TGTACA | 1 cut(s) | 211 |
| BstBAI | YACGTR | 1 cut(s) | 629 |
| BstBI | TTCGAA | 1 cut(s) | 417 |
| BstC8I | GCNNGC | 3 cut(s) | 381, 794, 955 |
| BstDEI | CTNAG | 6 cut(s) | 144, 852, 861, 948, 1049, 1076 |
| BstDSI | CCRYGG | 1 cut(s) | 168 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 762 |
| BstF5I | GGATG | 2 cut(s) | 174, 774 |
| BstFNI | CGCG | 2 cut(s) | 263, 789 |
| BstH2I | RGCGCY | 2 cut(s) | 582, 752 |
| BstHHI | GCGC | 4 cut(s) | 265, 525, 581, 751 |
| BstKTI | GATC | 3 cut(s) | 285, 644, 998 |
| BstMAI | GTCTC | 2 cut(s) | 147, 692 |
| BstMBI | GATC | 3 cut(s) | 282, 641, 995 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 65, 77, 302, 444 |
| BstNI | CCWGG | 2 cut(s) | 387, 548 |
| BstNSI | RCATGY | 1 cut(s) | 66 |
| BstSCI | CCNGG | 4 cut(s) | 26, 385, 546, 876 |
| BstSFI | CTRYAG | 1 cut(s) | 621 |
| BstUI | CGCG | 2 cut(s) | 263, 789 |
| BstV1I | GCAGC | 1 cut(s) | 55 |
| BstV2I | GAAGAC | 1 cut(s) | 492 |
| BstX2I | RGATCY | 1 cut(s) | 641 |
| BstYI | RGATCY | 1 cut(s) | 641 |
| Bsu36I | CCTNAGG | 1 cut(s) | 948 |
| BsuRI | GGCC | 3 cut(s) | 59, 398, 796 |
| BtgI | CCRYGG | 1 cut(s) | 168 |
| BtsCI | GGATG | 2 cut(s) | 174, 774 |
| Cac8I | GCNNGC | 3 cut(s) | 381, 794, 955 |
| CciI | TCATGA | 1 cut(s) | 285 |
| CfoI | GCGC | 4 cut(s) | 265, 525, 581, 751 |
| Csp6I | GTAC | 3 cut(s) | 212, 720, 729 |
| CviAII | CATG | 4 cut(s) | 63, 115, 286, 461 |
| CviQI | GTAC | 3 cut(s) | 212, 720, 729 |
| DdeI | CTNAG | 6 cut(s) | 144, 852, 861, 948, 1049, 1076 |
| DpnI | GATC | 3 cut(s) | 284, 643, 997 |
| DpnII | GATC | 3 cut(s) | 282, 641, 995 |
| DraI | TTTAAA | 1 cut(s) | 586 |
| EaeI | YGGCCR | 1 cut(s) | 396 |
| Eam1104I | CTCTTC | 2 cut(s) | 28, 264 |
| EarI | CTCTTC | 2 cut(s) | 28, 264 |
| Ecl136II | GAGCTC | 1 cut(s) | 856 |
| Eco130I | CCWWGG | 1 cut(s) | 132 |
| Eco24I | GRGCYC | 2 cut(s) | 858, 1082 |
| Eco31I | GGTCTC | 1 cut(s) | 147 |
| Eco32I | GATATC | 1 cut(s) | 106 |
| Eco47III | AGCGCT | 1 cut(s) | 750 |
| Eco53kI | GAGCTC | 1 cut(s) | 856 |
| Eco57I | CTGAAG | 3 cut(s) | 744, 951, 1059 |
| Eco81I | CCTNAGG | 1 cut(s) | 948 |
| Eco88I | CYCGRG | 1 cut(s) | 504 |
| EcoICRI | GAGCTC | 1 cut(s) | 856 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 762 |
| EcoRII | CCWGG | 2 cut(s) | 385, 546 |
| EcoRV | GATATC | 1 cut(s) | 106 |
| EcoT14I | CCWWGG | 1 cut(s) | 132 |
| EcoT38I | GRGCYC | 2 cut(s) | 858, 1082 |
| ErhI | CCWWGG | 1 cut(s) | 132 |
| FaeI | CATG | 4 cut(s) | 66, 118, 289, 464 |
| FaiI | YATR | 9 cut(s) | 64, 116, 186, 229, 287, 462, 599, 623, 888 |
| FaqI | GGGAC | 2 cut(s) | 860, 996 |
| FatI | CATG | 4 cut(s) | 62, 114, 285, 460 |
| FauI | CCCGC | 1 cut(s) | 268 |
| FbaI | TGATCA | 1 cut(s) | 282 |
| Fnu4HI | GCNGC | 2 cut(s) | 69, 790 |
| FokI | GGATG | 2 cut(s) | 161, 781 |
| FriOI | GRGCYC | 2 cut(s) | 858, 1082 |
| Fsp4HI | GCNGC | 2 cut(s) | 69, 790 |
| FspBI | CTAG | 7 cut(s) | 702, 732, 746, 752, 827, 992, 1083 |
| GlaI | GCGC | 4 cut(s) | 264, 524, 580, 750 |
| GluI | GCNGC | 2 cut(s) | 69, 790 |
| GsaI | CCCAGC | 2 cut(s) | 90, 309 |
| GsuI | CTGGAG | 1 cut(s) | 408 |
| HaeII | RGCGCY | 2 cut(s) | 582, 752 |
| HaeIII | GGCC | 3 cut(s) | 59, 398, 796 |
| HapII | CCGG | 3 cut(s) | 27, 328, 878 |
| HhaI | GCGC | 4 cut(s) | 265, 525, 581, 751 |
| Hin1II | CATG | 4 cut(s) | 66, 118, 289, 464 |
| Hin6I | GCGC | 4 cut(s) | 263, 523, 579, 749 |
| HinP1I | GCGC | 4 cut(s) | 263, 523, 579, 749 |
| HincII | GTYRAC | 1 cut(s) | 966 |
| HindII | GTYRAC | 1 cut(s) | 966 |
| HindIII | AAGCTT | 1 cut(s) | 377 |
| HinfI | GANTC | 3 cut(s) | 243, 943, 1009 |
| HpaII | CCGG | 3 cut(s) | 27, 328, 878 |
| HphI | GGTGA | 3 cut(s) | 250, 480, 1042 |
| Hpy166II | GTNNAC | 2 cut(s) | 966, 1070 |
| Hpy188I | TCNGA | 4 cut(s) | 480, 853, 942, 1077 |
| Hpy188III | TCNNGA | 5 cut(s) | 286, 317, 348, 506, 929 |
| Hpy8I | GTNNAC | 2 cut(s) | 966, 1070 |
| HpyAV | CCTTC | 7 cut(s) | 505, 719, 758, 810, 926, 973, 1021 |
| HpyCH4IV | ACGT | 1 cut(s) | 628 |
| HpyCH4V | TGCA | 4 cut(s) | 277, 438, 447, 710 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 65, 77, 302, 444 |
| HpyF3I | CTNAG | 6 cut(s) | 144, 852, 861, 948, 1049, 1076 |
| HpySE526I | ACGT | 1 cut(s) | 628 |
| Hsp92II | CATG | 4 cut(s) | 66, 118, 289, 464 |
| HspAI | GCGC | 4 cut(s) | 263, 523, 579, 749 |
| Ksp22I | TGATCA | 1 cut(s) | 282 |
| Kzo9I | GATC | 3 cut(s) | 282, 641, 995 |
| LmnI | GCTCC | 6 cut(s) | 166, 205, 388, 514, 861, 931 |
| Lsp1109I | GCAGC | 1 cut(s) | 55 |
| LweI | GCATC | 3 cut(s) | 434, 759, 845 |
| MaeI | CTAG | 7 cut(s) | 702, 732, 746, 752, 827, 992, 1083 |
| MaeII | ACGT | 1 cut(s) | 628 |
| MaeIII | GTNAC | 1 cut(s) | 1030 |
| MalI | GATC | 3 cut(s) | 284, 643, 997 |
| MboI | GATC | 3 cut(s) | 282, 641, 995 |
| MboII | GAAGA | 8 cut(s) | 15, 59, 281, 406, 492, 985, 988, 1052 |
| MflI | RGATCY | 1 cut(s) | 641 |
| MhlI | GDGCHC | 2 cut(s) | 858, 1082 |
| MluCI | AATT | 7 cut(s) | 354, 453, 587, 672, 705, 893, 1104 |
| MroXI | GAANNNNTTC | 3 cut(s) | 335, 542, 936 |
| MseI | TTAA | 2 cut(s) | 585, 1089 |
| MspI | CCGG | 3 cut(s) | 27, 328, 878 |
| MspR9I | CCNGG | 4 cut(s) | 28, 387, 548, 878 |
| Mva1269I | GAATGC | 2 cut(s) | 745, 936 |
| MvaI | CCWGG | 2 cut(s) | 387, 548 |
| MvnI | CGCG | 2 cut(s) | 263, 789 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 65, 77, 302, 444 |
| NciI | CCSGG | 2 cut(s) | 28, 878 |
| NdeII | GATC | 3 cut(s) | 282, 641, 995 |
| NlaIII | CATG | 4 cut(s) | 66, 118, 289, 464 |
| NlaIV | GGNNCC | 3 cut(s) | 127, 162, 643 |
| NmeAIII | GCCGAG | 1 cut(s) | 424 |
| NmuCI | GTSAC | 1 cut(s) | 1030 |
| NspI | RCATGY | 1 cut(s) | 66 |
| NspV | TTCGAA | 1 cut(s) | 417 |
| PagI | TCATGA | 1 cut(s) | 285 |
| PciI | ACATGT | 1 cut(s) | 62 |
| PctI | GAATGC | 2 cut(s) | 745, 936 |
| PdmI | GAANNNNTTC | 3 cut(s) | 335, 542, 936 |
| PfeI | GAWTC | 3 cut(s) | 243, 943, 1009 |
| PfoI | TCCNGGA | 3 cut(s) | 26, 385, 876 |
| PkrI | GCNGC | 2 cut(s) | 70, 791 |
| Ppu21I | YACGTR | 1 cut(s) | 629 |
| PscI | ACATGT | 1 cut(s) | 62 |
| Psp124BI | GAGCTC | 1 cut(s) | 858 |
| Psp6I | CCWGG | 2 cut(s) | 385, 546 |
| PspFI | CCCAGC | 2 cut(s) | 86, 305 |
| PspGI | CCWGG | 2 cut(s) | 385, 546 |
| PspN4I | GGNNCC | 3 cut(s) | 127, 162, 643 |
| PsuI | RGATCY | 1 cut(s) | 641 |
| RsaI | GTAC | 3 cut(s) | 213, 721, 730 |
| RsaNI | GTAC | 3 cut(s) | 212, 720, 729 |
| SacI | GAGCTC | 1 cut(s) | 858 |
| SaqAI | TTAA | 2 cut(s) | 585, 1089 |
| SatI | GCNGC | 2 cut(s) | 69, 790 |
| Sau3AI | GATC | 3 cut(s) | 282, 641, 995 |
| ScrFI | CCNGG | 4 cut(s) | 28, 387, 548, 878 |
| SduI | GDGCHC | 2 cut(s) | 858, 1082 |
| SfaNI | GCATC | 3 cut(s) | 434, 759, 845 |
| SfcI | CTRYAG | 1 cut(s) | 621 |
| SfuI | TTCGAA | 1 cut(s) | 417 |
| SmlI | CTYRAG | 1 cut(s) | 815 |
| SmoI | CTYRAG | 1 cut(s) | 815 |
| SpeI | ACTAGT | 1 cut(s) | 731 |
| Sse9I | AATT | 7 cut(s) | 354, 453, 587, 672, 705, 893, 1104 |
| SsiI | CCGC | 2 cut(s) | 261, 789 |
| SspI | AATATT | 1 cut(s) | 253 |
| SspMI | CTAG | 7 cut(s) | 702, 732, 746, 752, 827, 992, 1083 |
| SstI | GAGCTC | 1 cut(s) | 858 |
| StyD4I | CCNGG | 4 cut(s) | 26, 385, 546, 876 |
| StyI | CCWWGG | 1 cut(s) | 132 |
| TaiI | ACGT | 1 cut(s) | 631 |
| TaqI | TCGA | 4 cut(s) | 339, 417, 664, 921 |
| TasI | AATT | 7 cut(s) | 354, 453, 587, 672, 705, 893, 1104 |
| TatI | WGTACW | 2 cut(s) | 211, 719 |
| TauI | GCSGC | 1 cut(s) | 792 |
| TfiI | GAWTC | 3 cut(s) | 243, 943, 1009 |
| Tru1I | TTAA | 2 cut(s) | 585, 1089 |
| Tru9I | TTAA | 2 cut(s) | 585, 1089 |
| TseFI | GTSAC | 1 cut(s) | 1030 |
| TseI | GCWGC | 1 cut(s) | 68 |
| Tsp45I | GTSAC | 1 cut(s) | 1030 |
| TspDTI | ATGAA | 2 cut(s) | 302, 875 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 762 |
| XapI | RAATTY | 3 cut(s) | 587, 893, 1104 |
| XceI | RCATGY | 1 cut(s) | 66 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 119, 185 |
| XmnI | GAANNNNTTC | 3 cut(s) | 335, 542, 936 |
| XspI | CTAG | 7 cut(s) | 702, 732, 746, 752, 827, 992, 1083 |