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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 408 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 310 |
| AciI | CCGC | 3 cut(s) | 236, 280, 655 |
| AclWI | GGATC | 1 cut(s) | 777 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcuI | CTGAAG | 1 cut(s) | 470 |
| AcyI | GRCGYC | 1 cut(s) | 955 |
| AfaI | GTAC | 2 cut(s) | 938, 946 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 110, 184, 310, 606, 848 |
| AgsI | TTSAA | 8 cut(s) | 143, 343, 436, 539, 631, 778, 877, 899 |
| AjiI | CACGTC | 1 cut(s) | 673 |
| AjnI | CCWGG | 1 cut(s) | 786 |
| AluBI | AGCT | 7 cut(s) | 116, 244, 256, 265, 532, 826, 892 |
| AluI | AGCT | 7 cut(s) | 116, 244, 256, 265, 532, 826, 892 |
| Alw21I | GWGCWC | 2 cut(s) | 118, 672 |
| Alw26I | GTCTC | 3 cut(s) | 194, 294, 436 |
| AlwI | GGATC | 1 cut(s) | 777 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 23, 658 |
| Ama87I | CYCGRG | 1 cut(s) | 215 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 4 cut(s) | 358, 463, 466, 571 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 626, 648 |
| AspLEI | GCGC | 1 cut(s) | 409 |
| AspS9I | GGNCC | 1 cut(s) | 784 |
| AsuHPI | GGTGA | 2 cut(s) | 34, 751 |
| AvaI | CYCGRG | 1 cut(s) | 215 |
| AvaII | GGWCC | 1 cut(s) | 784 |
| BaeGI | GKGCMC | 2 cut(s) | 712, 842 |
| BanII | GRGCYC | 1 cut(s) | 118 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 897, 929 |
| BbsI | GAAGAC | 1 cut(s) | 925 |
| Bbv12I | GWGCWC | 2 cut(s) | 118, 672 |
| BbvI | GCAGC | 4 cut(s) | 370, 450, 478, 583 |
| BccI | CCATC | 3 cut(s) | 314, 382, 655 |
| BceAI | ACGGC | 2 cut(s) | 350, 832 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 469, 503 |
| BciT130I | CCWGG | 1 cut(s) | 788 |
| BcoDI | GTCTC | 3 cut(s) | 194, 294, 436 |
| BfaI | CTAG | 2 cut(s) | 617, 753 |
| BfmI | CTRYAG | 2 cut(s) | 464, 488 |
| BglII | AGATCT | 1 cut(s) | 484 |
| BisI | GCNGC | 5 cut(s) | 359, 464, 467, 572, 656 |
| BlsI | GCNGC | 5 cut(s) | 360, 465, 468, 573, 657 |
| Bme1390I | CCNGG | 1 cut(s) | 788 |
| Bme18I | GGWCC | 1 cut(s) | 784 |
| BmeT110I | CYCGRG | 1 cut(s) | 215 |
| BmgBI | CACGTC | 1 cut(s) | 673 |
| BmgT120I | GGNCC | 1 cut(s) | 784 |
| BmiI | GGNNCC | 1 cut(s) | 278 |
| BmrFI | CCNGG | 1 cut(s) | 788 |
| BmrI | ACTGGG | 1 cut(s) | 194 |
| BmsI | GCATC | 5 cut(s) | 291, 345, 414, 586, 708 |
| BmuI | ACTGGG | 1 cut(s) | 194 |
| BpiI | GAAGAC | 1 cut(s) | 925 |
| BpmI | CTGGAG | 1 cut(s) | 677 |
| BpuEI | CTTGAG | 1 cut(s) | 236 |
| BsaAI | YACGTR | 1 cut(s) | 944 |
| BsaHI | GRCGYC | 1 cut(s) | 955 |
| BsaI | GGTCTC | 1 cut(s) | 194 |
| BsaJI | CCNNGG | 1 cut(s) | 109 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 174, 204, 675, 705 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 110, 184, 310, 606, 848 |
| Bse1I | ACTGG | 2 cut(s) | 189, 735 |
| BseBI | CCWGG | 1 cut(s) | 788 |
| BseDI | CCNNGG | 1 cut(s) | 109 |
| BseGI | GGATG | 2 cut(s) | 153, 325 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 110, 184, 310, 606, 848 |
| BseMII | CTCAG | 1 cut(s) | 788 |
| BseNI | ACTGG | 2 cut(s) | 189, 735 |
| BseRI | GAGGAG | 1 cut(s) | 98 |
| BseSI | GKGCMC | 2 cut(s) | 712, 842 |
| BseXI | GCAGC | 4 cut(s) | 370, 450, 478, 583 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsiHKAI | GWGCWC | 2 cut(s) | 118, 672 |
| BsiHKCI | CYCGRG | 1 cut(s) | 215 |
| BsiSI | CCGG | 1 cut(s) | 600 |
| BslFI | GGGAC | 2 cut(s) | 383, 865 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 110, 184, 310, 606, 848 |
| BsmAI | GTCTC | 3 cut(s) | 194, 294, 436 |
| BsmFI | GGGAC | 2 cut(s) | 383, 865 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bso31I | GGTCTC | 1 cut(s) | 194 |
| BsoBI | CYCGRG | 1 cut(s) | 215 |
| Bsp1286I | GDGCHC | 4 cut(s) | 118, 672, 712, 842 |
| Bsp143I | GATC | 3 cut(s) | 484, 613, 769 |
| BspACI | CCGC | 3 cut(s) | 236, 280, 655 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 1 cut(s) | 789 |
| BspLI | GGNNCC | 1 cut(s) | 278 |
| BspMAI | CTGCAG | 2 cut(s) | 468, 492 |
| BspPI | GGATC | 1 cut(s) | 777 |
| BspTNI | GGTCTC | 1 cut(s) | 194 |
| BsrI | ACTGG | 2 cut(s) | 189, 735 |
| BssECI | CCNNGG | 1 cut(s) | 109 |
| BssMI | GATC | 3 cut(s) | 484, 613, 769 |
| BssNI | GRCGYC | 1 cut(s) | 955 |
| Bst2UI | CCWGG | 1 cut(s) | 788 |
| Bst4CI | ACNGT | 2 cut(s) | 37, 967 |
| BstACI | GRCGYC | 1 cut(s) | 955 |
| BstBAI | YACGTR | 1 cut(s) | 944 |
| BstC8I | GCNNGC | 2 cut(s) | 363, 461 |
| BstDEI | CTNAG | 3 cut(s) | 73, 130, 797 |
| BstF5I | GGATG | 2 cut(s) | 153, 325 |
| BstHHI | GCGC | 1 cut(s) | 409 |
| BstKTI | GATC | 3 cut(s) | 487, 616, 772 |
| BstMAI | GTCTC | 3 cut(s) | 194, 294, 436 |
| BstMBI | GATC | 3 cut(s) | 484, 613, 769 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 262 |
| BstNI | CCWGG | 1 cut(s) | 788 |
| BstNSI | RCATGY | 1 cut(s) | 274 |
| BstSCI | CCNGG | 1 cut(s) | 786 |
| BstSFI | CTRYAG | 2 cut(s) | 464, 488 |
| BstSLI | GKGCMC | 2 cut(s) | 712, 842 |
| BstSNI | TACGTA | 1 cut(s) | 944 |
| BstV1I | GCAGC | 4 cut(s) | 370, 450, 478, 583 |
| BstV2I | GAAGAC | 1 cut(s) | 925 |
| BstX2I | RGATCY | 1 cut(s) | 484 |
| BstYI | RGATCY | 1 cut(s) | 484 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtrI | CACGTC | 1 cut(s) | 673 |
| BtsCI | GGATG | 2 cut(s) | 153, 325 |
| BtsIMutI | CAGTG | 3 cut(s) | 42, 591, 728 |
| Cac8I | GCNNGC | 2 cut(s) | 363, 461 |
| CaiI | CAGNNNCTG | 2 cut(s) | 23, 658 |
| CfoI | GCGC | 1 cut(s) | 409 |
| Cfr13I | GGNCC | 1 cut(s) | 784 |
| CseI | GACGC | 1 cut(s) | 944 |
| Csp6I | GTAC | 2 cut(s) | 937, 945 |
| CviAII | CATG | 5 cut(s) | 46, 271, 688, 820, 855 |
| CviQI | GTAC | 2 cut(s) | 937, 945 |
| DdeI | CTNAG | 3 cut(s) | 73, 130, 797 |
| DpnI | GATC | 3 cut(s) | 486, 615, 771 |
| DpnII | GATC | 3 cut(s) | 484, 613, 769 |
| DraI | TTTAAA | 1 cut(s) | 100 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| EciI | GGCGGA | 1 cut(s) | 251 |
| Ecl136II | GAGCTC | 1 cut(s) | 116 |
| Eco105I | TACGTA | 1 cut(s) | 944 |
| Eco24I | GRGCYC | 1 cut(s) | 118 |
| Eco31I | GGTCTC | 1 cut(s) | 194 |
| Eco47I | GGWCC | 1 cut(s) | 784 |
| Eco53kI | GAGCTC | 1 cut(s) | 116 |
| Eco57I | CTGAAG | 1 cut(s) | 470 |
| Eco88I | CYCGRG | 1 cut(s) | 215 |
| EcoICRI | GAGCTC | 1 cut(s) | 116 |
| EcoO109I | RGGNCCY | 1 cut(s) | 784 |
| EcoRII | CCWGG | 1 cut(s) | 786 |
| EcoT38I | GRGCYC | 1 cut(s) | 118 |
| FaeI | CATG | 5 cut(s) | 49, 274, 691, 823, 858 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 56, 88, 368, 400 |
| FaqI | GGGAC | 2 cut(s) | 383, 865 |
| FatI | CATG | 5 cut(s) | 45, 270, 687, 819, 854 |
| Fnu4HI | GCNGC | 5 cut(s) | 359, 464, 467, 572, 656 |
| FokI | GGATG | 2 cut(s) | 140, 332 |
| FriOI | GRGCYC | 1 cut(s) | 118 |
| Fsp4HI | GCNGC | 5 cut(s) | 359, 464, 467, 572, 656 |
| FspBI | CTAG | 2 cut(s) | 617, 753 |
| FspI | TGCGCA | 1 cut(s) | 408 |
| GlaI | GCGC | 1 cut(s) | 408 |
| GluI | GCNGC | 5 cut(s) | 359, 464, 467, 572, 656 |
| GsuI | CTGGAG | 1 cut(s) | 677 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 1 cut(s) | 600 |
| HgaI | GACGC | 1 cut(s) | 944 |
| HhaI | GCGC | 1 cut(s) | 409 |
| Hin1I | GRCGYC | 1 cut(s) | 955 |
| Hin1II | CATG | 5 cut(s) | 49, 274, 691, 823, 858 |
| Hin6I | GCGC | 1 cut(s) | 407 |
| HinP1I | GCGC | 1 cut(s) | 407 |
| HindIII | AAGCTT | 3 cut(s) | 242, 263, 890 |
| HinfI | GANTC | 3 cut(s) | 134, 716, 908 |
| HpaII | CCGG | 1 cut(s) | 600 |
| HphI | GGTGA | 2 cut(s) | 34, 751 |
| Hpy166II | GTNNAC | 1 cut(s) | 42 |
| Hpy188I | TCNGA | 3 cut(s) | 113, 330, 798 |
| Hpy188III | TCNNGA | 5 cut(s) | 215, 217, 340, 617, 694 |
| Hpy8I | GTNNAC | 1 cut(s) | 42 |
| HpyAV | CCTTC | 3 cut(s) | 62, 445, 772 |
| HpyCH4III | ACNGT | 2 cut(s) | 37, 967 |
| HpyCH4IV | ACGT | 3 cut(s) | 372, 672, 943 |
| HpyCH4V | TGCA | 7 cut(s) | 94, 358, 427, 466, 490, 544, 811 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 262 |
| HpyF3I | CTNAG | 3 cut(s) | 73, 130, 797 |
| HpySE526I | ACGT | 3 cut(s) | 372, 672, 943 |
| Hsp92I | GRCGYC | 1 cut(s) | 955 |
| Hsp92II | CATG | 5 cut(s) | 49, 274, 691, 823, 858 |
| HspAI | GCGC | 1 cut(s) | 407 |
| Kzo9I | GATC | 3 cut(s) | 484, 613, 769 |
| LmnI | GCTCC | 3 cut(s) | 113, 696, 823 |
| Lsp1109I | GCAGC | 4 cut(s) | 370, 450, 478, 583 |
| LweI | GCATC | 5 cut(s) | 291, 345, 414, 586, 708 |
| MaeI | CTAG | 2 cut(s) | 617, 753 |
| MaeII | ACGT | 3 cut(s) | 372, 672, 943 |
| MaeIII | GTNAC | 4 cut(s) | 293, 589, 673, 739 |
| MalI | GATC | 3 cut(s) | 486, 615, 771 |
| MboI | GATC | 3 cut(s) | 484, 613, 769 |
| MboII | GAAGA | 4 cut(s) | 485, 569, 917, 930 |
| MfeI | CAATTG | 1 cut(s) | 539 |
| MflI | RGATCY | 1 cut(s) | 484 |
| MhlI | GDGCHC | 4 cut(s) | 118, 672, 712, 842 |
| MluCI | AATT | 2 cut(s) | 539, 960 |
| MlyI | GAGTC | 2 cut(s) | 128, 710 |
| MmeI | TCCRAC | 3 cut(s) | 181, 297, 747 |
| MnlI | CCTC | 6 cut(s) | 116, 119, 222, 226, 360, 775 |
| MroXI | GAANNNNTTC | 2 cut(s) | 626, 648 |
| MseI | TTAA | 4 cut(s) | 63, 99, 375, 970 |
| MspA1I | CMGCKG | 1 cut(s) | 655 |
| MspI | CCGG | 1 cut(s) | 600 |
| MspR9I | CCNGG | 1 cut(s) | 788 |
| MssI | GTTTAAAC | 1 cut(s) | 100 |
| MunI | CAATTG | 1 cut(s) | 539 |
| MvaI | CCWGG | 1 cut(s) | 788 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 262 |
| NdeII | GATC | 3 cut(s) | 484, 613, 769 |
| NlaIII | CATG | 5 cut(s) | 49, 274, 691, 823, 858 |
| NlaIV | GGNNCC | 1 cut(s) | 278 |
| NmeAIII | GCCGAG | 1 cut(s) | 31 |
| NmuCI | GTSAC | 3 cut(s) | 589, 673, 739 |
| NsbI | TGCGCA | 1 cut(s) | 408 |
| NspI | RCATGY | 1 cut(s) | 274 |
| PaeR7I | CTCGAG | 1 cut(s) | 215 |
| PdmI | GAANNNNTTC | 2 cut(s) | 626, 648 |
| PfeI | GAWTC | 1 cut(s) | 908 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 310 |
| PkrI | GCNGC | 5 cut(s) | 360, 465, 468, 573, 657 |
| PleI | GAGTC | 2 cut(s) | 128, 710 |
| PmeI | GTTTAAAC | 1 cut(s) | 100 |
| PpsI | GAGTC | 2 cut(s) | 128, 710 |
| Ppu21I | YACGTR | 1 cut(s) | 944 |
| PpuMI | RGGWCCY | 1 cut(s) | 784 |
| Psp124BI | GAGCTC | 1 cut(s) | 118 |
| Psp5II | RGGWCCY | 1 cut(s) | 784 |
| Psp6I | CCWGG | 1 cut(s) | 786 |
| PspGI | CCWGG | 1 cut(s) | 786 |
| PspN4I | GGNNCC | 1 cut(s) | 278 |
| PspPI | GGNCC | 1 cut(s) | 784 |
| PspPPI | RGGWCCY | 1 cut(s) | 784 |
| PstI | CTGCAG | 2 cut(s) | 468, 492 |
| PstNI | CAGNNNCTG | 2 cut(s) | 23, 658 |
| PsuI | RGATCY | 1 cut(s) | 484 |
| RsaI | GTAC | 2 cut(s) | 938, 946 |
| RsaNI | GTAC | 2 cut(s) | 937, 945 |
| SacI | GAGCTC | 1 cut(s) | 118 |
| SaqAI | TTAA | 4 cut(s) | 63, 99, 375, 970 |
| SatI | GCNGC | 5 cut(s) | 359, 464, 467, 572, 656 |
| Sau3AI | GATC | 3 cut(s) | 484, 613, 769 |
| Sau96I | GGNCC | 1 cut(s) | 784 |
| SchI | GAGTC | 2 cut(s) | 128, 710 |
| ScrFI | CCNGG | 1 cut(s) | 788 |
| SduI | GDGCHC | 4 cut(s) | 118, 672, 712, 842 |
| SfaNI | GCATC | 5 cut(s) | 291, 345, 414, 586, 708 |
| SfcI | CTRYAG | 2 cut(s) | 464, 488 |
| Sfr274I | CTCGAG | 1 cut(s) | 215 |
| SinI | GGWCC | 1 cut(s) | 784 |
| SlaI | CTCGAG | 1 cut(s) | 215 |
| SmlI | CTYRAG | 2 cut(s) | 215, 251 |
| SmoI | CTYRAG | 2 cut(s) | 215, 251 |
| SnaBI | TACGTA | 1 cut(s) | 944 |
| Sse9I | AATT | 2 cut(s) | 539, 960 |
| SsiI | CCGC | 3 cut(s) | 236, 280, 655 |
| SspMI | CTAG | 2 cut(s) | 617, 753 |
| SstI | GAGCTC | 1 cut(s) | 118 |
| StyD4I | CCNGG | 1 cut(s) | 786 |
| TaaI | ACNGT | 2 cut(s) | 37, 967 |
| TaiI | ACGT | 3 cut(s) | 375, 675, 946 |
| TaqI | TCGA | 3 cut(s) | 216, 666, 702 |
| TasI | AATT | 2 cut(s) | 539, 960 |
| TatI | WGTACW | 1 cut(s) | 936 |
| TauI | GCSGC | 1 cut(s) | 658 |
| TfiI | GAWTC | 1 cut(s) | 908 |
| Tru1I | TTAA | 4 cut(s) | 63, 99, 375, 970 |
| Tru9I | TTAA | 4 cut(s) | 63, 99, 375, 970 |
| TscAI | CASTG | 3 cut(s) | 42, 598, 735 |
| TseFI | GTSAC | 3 cut(s) | 589, 673, 739 |
| TseI | GCWGC | 4 cut(s) | 358, 463, 466, 571 |
| Tsp45I | GTSAC | 3 cut(s) | 589, 673, 739 |
| TspDTI | ATGAA | 2 cut(s) | 216, 581 |
| TspRI | CASTG | 3 cut(s) | 42, 598, 735 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 310 |
| VpaK11BI | GGWCC | 1 cut(s) | 784 |
| XbaI | TCTAGA | 1 cut(s) | 616 |
| XceI | RCATGY | 1 cut(s) | 274 |
| XhoI | CTCGAG | 1 cut(s) | 215 |
| XmnI | GAANNNNTTC | 2 cut(s) | 626, 648 |
| XspI | CTAG | 2 cut(s) | 617, 753 |