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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 66 |
| Acc16I | TGCGCA | 2 cut(s) | 218, 345 |
| AccII | CGCG | 1 cut(s) | 172 |
| AcuI | CTGAAG | 1 cut(s) | 404 |
| AcyI | GRCGYC | 2 cut(s) | 63, 140 |
| AflIII | ACRYGT | 2 cut(s) | 170, 452 |
| AgsI | TTSAA | 3 cut(s) | 14, 254, 316 |
| AluBI | AGCT | 4 cut(s) | 30, 250, 310, 388 |
| AluI | AGCT | 4 cut(s) | 30, 250, 310, 388 |
| ApeKI | GCWGC | 1 cut(s) | 35 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 311 |
| AspLEI | GCGC | 5 cut(s) | 49, 94, 157, 219, 346 |
| AsuNHI | GCTAGC | 1 cut(s) | 128 |
| BbvI | GCAGC | 1 cut(s) | 47 |
| BccI | CCATC | 2 cut(s) | 194, 266 |
| BfaI | CTAG | 4 cut(s) | 129, 197, 353, 395 |
| BfoI | RGCGCY | 1 cut(s) | 50 |
| BglII | AGATCT | 1 cut(s) | 163 |
| BisI | GCNGC | 1 cut(s) | 36 |
| BlsI | GCNGC | 1 cut(s) | 37 |
| BmiI | GGNNCC | 1 cut(s) | 328 |
| BmsI | GCATC | 1 cut(s) | 228 |
| BmtI | GCTAGC | 1 cut(s) | 132 |
| BpmI | CTGGAG | 1 cut(s) | 612 |
| BpuEI | CTTGAG | 1 cut(s) | 491 |
| Bsa29I | ATCGAT | 1 cut(s) | 414 |
| BsaHI | GRCGYC | 2 cut(s) | 63, 140 |
| BsaJI | CCNNGG | 1 cut(s) | 42 |
| BsaWI | WCCGGW | 1 cut(s) | 537 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 48, 78 |
| Bse1I | ACTGG | 1 cut(s) | 595 |
| Bse3DI | GCAATG | 1 cut(s) | 521 |
| BseCI | ATCGAT | 1 cut(s) | 414 |
| BseDI | CCNNGG | 1 cut(s) | 42 |
| BseGI | GGATG | 1 cut(s) | 307 |
| BseMI | GCAATG | 1 cut(s) | 521 |
| BseNI | ACTGG | 1 cut(s) | 595 |
| BseXI | GCAGC | 1 cut(s) | 47 |
| Bsh1236I | CGCG | 1 cut(s) | 172 |
| BshVI | ATCGAT | 1 cut(s) | 414 |
| BsiSI | CCGG | 2 cut(s) | 181, 538 |
| Bsp143I | GATC | 1 cut(s) | 163 |
| Bsp19I | CCATGG | 1 cut(s) | 42 |
| BspDI | ATCGAT | 1 cut(s) | 414 |
| BspFNI | CGCG | 1 cut(s) | 172 |
| BspLI | GGNNCC | 1 cut(s) | 328 |
| BspOI | GCTAGC | 1 cut(s) | 132 |
| BspQI | GCTCTTC | 1 cut(s) | 240 |
| BsrDI | GCAATG | 1 cut(s) | 521 |
| BsrI | ACTGG | 1 cut(s) | 595 |
| BssECI | CCNNGG | 1 cut(s) | 42 |
| BssMI | GATC | 1 cut(s) | 163 |
| BssNI | GRCGYC | 2 cut(s) | 63, 140 |
| BssT1I | CCWWGG | 1 cut(s) | 42 |
| Bst4CI | ACNGT | 1 cut(s) | 150 |
| Bst6I | CTCTTC | 1 cut(s) | 240 |
| BstACI | GRCGYC | 2 cut(s) | 63, 140 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 32 |
| BstC8I | GCNNGC | 7 cut(s) | 28, 51, 130, 194, 283, 348, 390 |
| BstDEI | CTNAG | 1 cut(s) | 6 |
| BstDSI | CCRYGG | 1 cut(s) | 42 |
| BstF5I | GGATG | 1 cut(s) | 307 |
| BstFNI | CGCG | 1 cut(s) | 172 |
| BstH2I | RGCGCY | 1 cut(s) | 50 |
| BstHHI | GCGC | 5 cut(s) | 49, 94, 157, 219, 346 |
| BstKTI | GATC | 1 cut(s) | 166 |
| BstMBI | GATC | 1 cut(s) | 163 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 32, 44, 278 |
| BstNSI | RCATGY | 2 cut(s) | 350, 456 |
| BstUI | CGCG | 1 cut(s) | 172 |
| BstV1I | GCAGC | 1 cut(s) | 47 |
| BstX2I | RGATCY | 1 cut(s) | 163 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 337 |
| BstYI | RGATCY | 1 cut(s) | 163 |
| Bsu15I | ATCGAT | 1 cut(s) | 414 |
| BsuTUI | ATCGAT | 1 cut(s) | 414 |
| BtgI | CCRYGG | 1 cut(s) | 42 |
| BtsCI | GGATG | 1 cut(s) | 307 |
| Cac8I | GCNNGC | 7 cut(s) | 28, 51, 130, 194, 283, 348, 390 |
| CfoI | GCGC | 5 cut(s) | 49, 94, 157, 219, 346 |
| ClaI | ATCGAT | 1 cut(s) | 414 |
| CseI | GACGC | 3 cut(s) | 27, 148, 161 |
| CviAII | CATG | 5 cut(s) | 43, 347, 453, 508, 608 |
| DdeI | CTNAG | 1 cut(s) | 6 |
| DpnI | GATC | 1 cut(s) | 165 |
| DpnII | GATC | 1 cut(s) | 163 |
| Eam1104I | CTCTTC | 1 cut(s) | 240 |
| EarI | CTCTTC | 1 cut(s) | 240 |
| Eco130I | CCWWGG | 1 cut(s) | 42 |
| Eco57I | CTGAAG | 1 cut(s) | 404 |
| EcoT14I | CCWWGG | 1 cut(s) | 42 |
| ErhI | CCWWGG | 1 cut(s) | 42 |
| FaeI | CATG | 5 cut(s) | 46, 350, 456, 511, 611 |
| FaiI | YATR | 9 cut(s) | 44, 299, 348, 401, 445, 454, 461, 509, 609 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 350, 382 |
| FatI | CATG | 5 cut(s) | 42, 346, 452, 507, 607 |
| Fnu4HI | GCNGC | 1 cut(s) | 36 |
| FokI | GGATG | 1 cut(s) | 314 |
| Fsp4HI | GCNGC | 1 cut(s) | 36 |
| FspAI | RTGCGCAY | 1 cut(s) | 218 |
| FspBI | CTAG | 4 cut(s) | 129, 197, 353, 395 |
| FspI | TGCGCA | 2 cut(s) | 218, 345 |
| GlaI | GCGC | 5 cut(s) | 48, 93, 156, 218, 345 |
| GluI | GCNGC | 1 cut(s) | 36 |
| GsuI | CTGGAG | 1 cut(s) | 612 |
| HaeII | RGCGCY | 1 cut(s) | 50 |
| HapII | CCGG | 2 cut(s) | 181, 538 |
| HgaI | GACGC | 3 cut(s) | 27, 148, 161 |
| HhaI | GCGC | 5 cut(s) | 49, 94, 157, 219, 346 |
| Hin1I | GRCGYC | 2 cut(s) | 63, 140 |
| Hin1II | CATG | 5 cut(s) | 46, 350, 456, 511, 611 |
| Hin6I | GCGC | 5 cut(s) | 47, 92, 155, 217, 344 |
| HinP1I | GCGC | 5 cut(s) | 47, 92, 155, 217, 344 |
| HindIII | AAGCTT | 2 cut(s) | 28, 308 |
| HinfI | GANTC | 2 cut(s) | 379, 597 |
| HpaII | CCGG | 2 cut(s) | 181, 538 |
| Hpy188I | TCNGA | 3 cut(s) | 7, 138, 384 |
| Hpy188III | TCNNGA | 3 cut(s) | 293, 370, 562 |
| Hpy99I | CGWCG | 2 cut(s) | 105, 281 |
| HpyAV | CCTTC | 4 cut(s) | 117, 198, 316, 568 |
| HpyCH4III | ACNGT | 1 cut(s) | 150 |
| HpyCH4IV | ACGT | 2 cut(s) | 63, 239 |
| HpyCH4V | TGCA | 5 cut(s) | 26, 35, 53, 526, 587 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 32, 44, 278 |
| HpyF3I | CTNAG | 1 cut(s) | 6 |
| HpySE526I | ACGT | 2 cut(s) | 63, 239 |
| Hsp92I | GRCGYC | 2 cut(s) | 63, 140 |
| Hsp92II | CATG | 5 cut(s) | 46, 350, 456, 511, 611 |
| HspAI | GCGC | 5 cut(s) | 47, 92, 155, 217, 344 |
| Kzo9I | GATC | 1 cut(s) | 163 |
| LguI | GCTCTTC | 1 cut(s) | 240 |
| LmnI | GCTCC | 1 cut(s) | 518 |
| LpnPI | CCDG | 9 cut(s) | 39, 194, 267, 374, 383, 500, 551, 575, 576 |
| Lsp1109I | GCAGC | 1 cut(s) | 47 |
| LweI | GCATC | 1 cut(s) | 228 |
| MaeI | CTAG | 4 cut(s) | 129, 197, 353, 395 |
| MaeII | ACGT | 2 cut(s) | 63, 239 |
| MaeIII | GTNAC | 1 cut(s) | 568 |
| MalI | GATC | 1 cut(s) | 165 |
| MboI | GATC | 1 cut(s) | 163 |
| MboII | GAAGA | 4 cut(s) | 26, 224, 257, 358 |
| MflI | RGATCY | 1 cut(s) | 163 |
| MluCI | AATT | 2 cut(s) | 176, 286 |
| MluI | ACGCGT | 1 cut(s) | 170 |
| MmeI | TCCRAC | 1 cut(s) | 222 |
| MnlI | CCTC | 3 cut(s) | 131, 144, 587 |
| MroXI | GAANNNNTTC | 1 cut(s) | 311 |
| MslI | CAYNNNNRTG | 1 cut(s) | 335 |
| MspI | CCGG | 2 cut(s) | 181, 538 |
| MvnI | CGCG | 1 cut(s) | 172 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 32, 44, 278 |
| NcoI | CCATGG | 1 cut(s) | 42 |
| NdeII | GATC | 1 cut(s) | 163 |
| NheI | GCTAGC | 1 cut(s) | 128 |
| NlaIII | CATG | 5 cut(s) | 46, 350, 456, 511, 611 |
| NlaIV | GGNNCC | 1 cut(s) | 328 |
| NsbI | TGCGCA | 2 cut(s) | 218, 345 |
| NspI | RCATGY | 2 cut(s) | 350, 456 |
| PaeI | GCATGC | 1 cut(s) | 350 |
| PciI | ACATGT | 1 cut(s) | 452 |
| PciSI | GCTCTTC | 1 cut(s) | 240 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 273 |
| PdmI | GAANNNNTTC | 1 cut(s) | 311 |
| PfeI | GAWTC | 2 cut(s) | 379, 597 |
| PkrI | GCNGC | 1 cut(s) | 37 |
| PscI | ACATGT | 1 cut(s) | 452 |
| PspN4I | GGNNCC | 1 cut(s) | 328 |
| PsuI | RGATCY | 1 cut(s) | 163 |
| RseI | CAYNNNNRTG | 1 cut(s) | 335 |
| SapI | GCTCTTC | 1 cut(s) | 240 |
| SatI | GCNGC | 1 cut(s) | 36 |
| Sau3AI | GATC | 1 cut(s) | 163 |
| SetI | ASST | 9 cut(s) | 32, 66, 123, 209, 242, 252, 312, 390, 400 |
| SfaNI | GCATC | 1 cut(s) | 228 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 335 |
| SmlI | CTYRAG | 1 cut(s) | 470 |
| SmoI | CTYRAG | 1 cut(s) | 470 |
| SphI | GCATGC | 1 cut(s) | 350 |
| Sse9I | AATT | 2 cut(s) | 176, 286 |
| SspMI | CTAG | 4 cut(s) | 129, 197, 353, 395 |
| StyI | CCWWGG | 1 cut(s) | 42 |
| TaaI | ACNGT | 1 cut(s) | 150 |
| TaiI | ACGT | 2 cut(s) | 66, 242 |
| TaqI | TCGA | 2 cut(s) | 334, 414 |
| TasI | AATT | 2 cut(s) | 176, 286 |
| TfiI | GAWTC | 2 cut(s) | 379, 597 |
| TseI | GCWGC | 1 cut(s) | 35 |
| TspDTI | ATGAA | 2 cut(s) | 392, 524 |
| XceI | RCATGY | 2 cut(s) | 350, 456 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 265 |
| XmnI | GAANNNNTTC | 1 cut(s) | 311 |
| XspI | CTAG | 4 cut(s) | 129, 197, 353, 395 |
| ZraI | GACGTC | 1 cut(s) | 64 |