ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 202 |
| AccBSI | CCGCTC | 1 cut(s) | 693 |
| AciI | CCGC | 4 cut(s) | 472, 691, 722, 879 |
| AcoI | YGGCCR | 1 cut(s) | 831 |
| AcsI | RAATTY | 1 cut(s) | 811 |
| AcuI | CTGAAG | 1 cut(s) | 179 |
| AfaI | GTAC | 1 cut(s) | 705 |
| AgeI | ACCGGT | 1 cut(s) | 712 |
| AgsI | TTSAA | 2 cut(s) | 120, 515 |
| AjnI | CCWGG | 2 cut(s) | 156, 481 |
| AluBI | AGCT | 5 cut(s) | 267, 282, 323, 790, 910 |
| AluI | AGCT | 5 cut(s) | 267, 282, 323, 790, 910 |
| Alw26I | GTCTC | 3 cut(s) | 45, 81, 864 |
| Ama87I | CYCGRG | 2 cut(s) | 603, 609 |
| AoxI | GGCC | 3 cut(s) | 745, 831, 876 |
| ApeKI | GCWGC | 2 cut(s) | 35, 235 |
| ApoI | RAATTY | 1 cut(s) | 811 |
| AsiGI | ACCGGT | 1 cut(s) | 712 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 149 |
| AspLEI | GCGC | 1 cut(s) | 259 |
| AspS9I | GGNCC | 3 cut(s) | 203, 331, 746 |
| AsuC2I | CCSGG | 3 cut(s) | 610, 611, 830 |
| AsuHPI | GGTGA | 1 cut(s) | 882 |
| AvaI | CYCGRG | 2 cut(s) | 603, 609 |
| AvaII | GGWCC | 2 cut(s) | 203, 331 |
| BaeGI | GKGCMC | 1 cut(s) | 686 |
| BanII | GRGCYC | 1 cut(s) | 610 |
| BbvI | GCAGC | 2 cut(s) | 22, 222 |
| BccI | CCATC | 3 cut(s) | 242, 350, 655 |
| BciT130I | CCWGG | 2 cut(s) | 158, 483 |
| BcnI | CCSGG | 3 cut(s) | 610, 611, 830 |
| BcoDI | GTCTC | 3 cut(s) | 45, 81, 864 |
| BfaI | CTAG | 2 cut(s) | 335, 911 |
| BfmI | CTRYAG | 3 cut(s) | 458, 779, 882 |
| BfoI | RGCGCY | 1 cut(s) | 260 |
| BfuAI | ACCTGC | 1 cut(s) | 202 |
| BglII | AGATCT | 2 cut(s) | 122, 303 |
| BisI | GCNGC | 3 cut(s) | 36, 236, 879 |
| BlsI | GCNGC | 3 cut(s) | 37, 237, 880 |
| Bme1390I | CCNGG | 5 cut(s) | 158, 483, 610, 611, 830 |
| Bme18I | GGWCC | 2 cut(s) | 203, 331 |
| BmeT110I | CYCGRG | 2 cut(s) | 603, 609 |
| BmgT120I | GGNCC | 3 cut(s) | 203, 331, 746 |
| BmiI | GGNNCC | 2 cut(s) | 643, 748 |
| BmrFI | CCNGG | 5 cut(s) | 158, 483, 610, 611, 830 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 266, 298 |
| BpmI | CTGGAG | 1 cut(s) | 108 |
| BpuEI | CTTGAG | 1 cut(s) | 673 |
| BpuMI | CCSGG | 3 cut(s) | 610, 611, 830 |
| Bsa29I | ATCGAT | 1 cut(s) | 69 |
| BsaJI | CCNNGG | 3 cut(s) | 206, 482, 609 |
| BsaWI | WCCGGW | 1 cut(s) | 712 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 844, 874 |
| Bse118I | RCCGGY | 3 cut(s) | 53, 712, 724 |
| Bse1I | ACTGG | 2 cut(s) | 91, 575 |
| Bse3DI | GCAATG | 1 cut(s) | 64 |
| BseBI | CCWGG | 2 cut(s) | 158, 483 |
| BseCI | ATCGAT | 1 cut(s) | 69 |
| BseDI | CCNNGG | 3 cut(s) | 206, 482, 609 |
| BseGI | GGATG | 5 cut(s) | 22, 153, 391, 534, 647 |
| BseMI | GCAATG | 1 cut(s) | 64 |
| BseMII | CTCAG | 1 cut(s) | 297 |
| BseNI | ACTGG | 2 cut(s) | 91, 575 |
| BseSI | GKGCMC | 1 cut(s) | 686 |
| BseXI | GCAGC | 2 cut(s) | 22, 222 |
| BsgI | GTGCAG | 1 cut(s) | 320 |
| BshFI | GGCC | 3 cut(s) | 747, 833, 878 |
| BshTI | ACCGGT | 1 cut(s) | 712 |
| BshVI | ATCGAT | 1 cut(s) | 69 |
| BsiHKCI | CYCGRG | 2 cut(s) | 603, 609 |
| BsiSI | CCGG | 5 cut(s) | 54, 610, 713, 725, 830 |
| BslFI | GGGAC | 1 cut(s) | 812 |
| BsmAI | GTCTC | 3 cut(s) | 45, 81, 864 |
| BsmBI | CGTCTC | 1 cut(s) | 45 |
| BsmFI | GGGAC | 1 cut(s) | 812 |
| BsnI | GGCC | 3 cut(s) | 747, 833, 878 |
| BsoBI | CYCGRG | 2 cut(s) | 603, 609 |
| Bsp1286I | GDGCHC | 2 cut(s) | 610, 686 |
| Bsp1407I | TGTACA | 1 cut(s) | 703 |
| Bsp143I | GATC | 4 cut(s) | 70, 122, 178, 303 |
| BspACI | CCGC | 4 cut(s) | 472, 691, 722, 879 |
| BspANI | GGCC | 3 cut(s) | 747, 833, 878 |
| BspCNI | CTCAG | 1 cut(s) | 296 |
| BspDI | ATCGAT | 1 cut(s) | 69 |
| BspHI | TCATGA | 1 cut(s) | 433 |
| BspLI | GGNNCC | 2 cut(s) | 643, 748 |
| BspMAI | CTGCAG | 2 cut(s) | 462, 783 |
| BspMI | ACCTGC | 1 cut(s) | 202 |
| BsrBI | CCGCTC | 1 cut(s) | 693 |
| BsrDI | GCAATG | 1 cut(s) | 64 |
| BsrFI | RCCGGY | 3 cut(s) | 53, 712, 724 |
| BsrGI | TGTACA | 1 cut(s) | 703 |
| BsrI | ACTGG | 2 cut(s) | 91, 575 |
| BssAI | RCCGGY | 3 cut(s) | 53, 712, 724 |
| BssECI | CCNNGG | 3 cut(s) | 206, 482, 609 |
| BssMI | GATC | 4 cut(s) | 70, 122, 178, 303 |
| Bst2UI | CCWGG | 2 cut(s) | 158, 483 |
| Bst4CI | ACNGT | 3 cut(s) | 396, 441, 894 |
| Bst6I | CTCTTC | 1 cut(s) | 87 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 540 |
| BstAUI | TGTACA | 1 cut(s) | 703 |
| BstC8I | GCNNGC | 1 cut(s) | 55 |
| BstDEI | CTNAG | 3 cut(s) | 126, 283, 855 |
| BstDSI | CCRYGG | 1 cut(s) | 206 |
| BstF5I | GGATG | 5 cut(s) | 22, 153, 391, 534, 647 |
| BstH2I | RGCGCY | 1 cut(s) | 260 |
| BstHHI | GCGC | 1 cut(s) | 259 |
| BstKTI | GATC | 4 cut(s) | 73, 125, 181, 306 |
| BstMAI | GTCTC | 3 cut(s) | 45, 81, 864 |
| BstMBI | GATC | 4 cut(s) | 70, 122, 178, 303 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 44, 540, 690, 787 |
| BstNI | CCWGG | 2 cut(s) | 158, 483 |
| BstNSI | RCATGY | 1 cut(s) | 602 |
| BstSCI | CCNGG | 5 cut(s) | 156, 481, 608, 609, 828 |
| BstSFI | CTRYAG | 3 cut(s) | 458, 779, 882 |
| BstSLI | GKGCMC | 1 cut(s) | 686 |
| BstV1I | GCAGC | 2 cut(s) | 22, 222 |
| BstX2I | RGATCY | 2 cut(s) | 122, 303 |
| BstYI | RGATCY | 2 cut(s) | 122, 303 |
| Bsu15I | ATCGAT | 1 cut(s) | 69 |
| BsuRI | GGCC | 3 cut(s) | 747, 833, 878 |
| BsuTUI | ATCGAT | 1 cut(s) | 69 |
| BtgI | CCRYGG | 1 cut(s) | 206 |
| BtsCI | GGATG | 5 cut(s) | 22, 153, 391, 534, 647 |
| BtsIMutI | CAGTG | 1 cut(s) | 834 |
| BveI | ACCTGC | 1 cut(s) | 202 |
| Cac8I | GCNNGC | 1 cut(s) | 55 |
| CciI | TCATGA | 1 cut(s) | 433 |
| CfoI | GCGC | 1 cut(s) | 259 |
| Cfr10I | RCCGGY | 3 cut(s) | 53, 712, 724 |
| Cfr13I | GGNCC | 3 cut(s) | 203, 331, 746 |
| Cfr9I | CCCGGG | 1 cut(s) | 609 |
| ClaI | ATCGAT | 1 cut(s) | 69 |
| CseI | GACGC | 2 cut(s) | 27, 345 |
| Csp6I | GTAC | 1 cut(s) | 704 |
| CspAI | ACCGGT | 1 cut(s) | 712 |
| CviAII | CATG | 6 cut(s) | 221, 406, 434, 540, 557, 599 |
| CviQI | GTAC | 1 cut(s) | 704 |
| DdeI | CTNAG | 3 cut(s) | 126, 283, 855 |
| DpnI | GATC | 4 cut(s) | 72, 124, 180, 305 |
| DpnII | GATC | 4 cut(s) | 70, 122, 178, 303 |
| EaeI | YGGCCR | 1 cut(s) | 831 |
| Eam1104I | CTCTTC | 1 cut(s) | 87 |
| EarI | CTCTTC | 1 cut(s) | 87 |
| EciI | GGCGGA | 2 cut(s) | 461, 711 |
| Eco24I | GRGCYC | 1 cut(s) | 610 |
| Eco47I | GGWCC | 2 cut(s) | 203, 331 |
| Eco57I | CTGAAG | 1 cut(s) | 179 |
| Eco88I | CYCGRG | 2 cut(s) | 603, 609 |
| EcoO109I | RGGNCCY | 1 cut(s) | 331 |
| EcoRII | CCWGG | 2 cut(s) | 156, 481 |
| EcoT22I | ATGCAT | 1 cut(s) | 558 |
| EcoT38I | GRGCYC | 1 cut(s) | 610 |
| Esp3I | CGTCTC | 1 cut(s) | 45 |
| FaeI | CATG | 6 cut(s) | 224, 409, 437, 543, 560, 602 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 437, 469, 725, 757 |
| FaqI | GGGAC | 1 cut(s) | 812 |
| FatI | CATG | 6 cut(s) | 220, 405, 433, 539, 556, 598 |
| Fnu4HI | GCNGC | 3 cut(s) | 36, 236, 879 |
| FokI | GGATG | 5 cut(s) | 29, 140, 398, 541, 634 |
| FriOI | GRGCYC | 1 cut(s) | 610 |
| Fsp4HI | GCNGC | 3 cut(s) | 36, 236, 879 |
| FspBI | CTAG | 2 cut(s) | 335, 911 |
| GlaI | GCGC | 1 cut(s) | 258 |
| GluI | GCNGC | 3 cut(s) | 36, 236, 879 |
| GsuI | CTGGAG | 1 cut(s) | 108 |
| HaeII | RGCGCY | 1 cut(s) | 260 |
| HaeIII | GGCC | 3 cut(s) | 747, 833, 878 |
| HapII | CCGG | 5 cut(s) | 54, 610, 713, 725, 830 |
| HgaI | GACGC | 2 cut(s) | 27, 345 |
| HhaI | GCGC | 1 cut(s) | 259 |
| Hin1II | CATG | 6 cut(s) | 224, 409, 437, 543, 560, 602 |
| Hin6I | GCGC | 1 cut(s) | 257 |
| HinP1I | GCGC | 1 cut(s) | 257 |
| HincII | GTYRAC | 1 cut(s) | 217 |
| HindII | GTYRAC | 1 cut(s) | 217 |
| HindIII | AAGCTT | 1 cut(s) | 788 |
| HpaI | GTTAAC | 1 cut(s) | 217 |
| HpaII | CCGG | 5 cut(s) | 54, 610, 713, 725, 830 |
| HphI | GGTGA | 1 cut(s) | 882 |
| Hpy166II | GTNNAC | 3 cut(s) | 217, 704, 890 |
| Hpy188I | TCNGA | 1 cut(s) | 84 |
| Hpy188III | TCNNGA | 3 cut(s) | 120, 434, 526 |
| Hpy8I | GTNNAC | 3 cut(s) | 217, 704, 890 |
| Hpy99I | CGWCG | 1 cut(s) | 84 |
| HpyAV | CCTTC | 2 cut(s) | 460, 514 |
| HpyCH4III | ACNGT | 3 cut(s) | 396, 441, 894 |
| HpyCH4IV | ACGT | 2 cut(s) | 175, 763 |
| HpyCH4V | TGCA | 8 cut(s) | 238, 301, 460, 534, 556, 564, 665, 781 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 44, 540, 690, 787 |
| HpyF3I | CTNAG | 3 cut(s) | 126, 283, 855 |
| HpySE526I | ACGT | 2 cut(s) | 175, 763 |
| Hsp92II | CATG | 6 cut(s) | 224, 409, 437, 543, 560, 602 |
| HspAI | GCGC | 1 cut(s) | 257 |
| KroI | GCCGGC | 1 cut(s) | 53 |
| KroNI | GCCGGC | 1 cut(s) | 55 |
| KspAI | GTTAAC | 1 cut(s) | 217 |
| Kzo9I | GATC | 4 cut(s) | 70, 122, 178, 303 |
| LmnI | GCTCC | 2 cut(s) | 484, 698 |
| Lsp1109I | GCAGC | 2 cut(s) | 22, 222 |
| MaeI | CTAG | 2 cut(s) | 335, 911 |
| MaeII | ACGT | 2 cut(s) | 175, 763 |
| MaeIII | GTNAC | 2 cut(s) | 19, 592 |
| MalI | GATC | 4 cut(s) | 72, 124, 180, 305 |
| MbiI | CCGCTC | 1 cut(s) | 693 |
| MboI | GATC | 4 cut(s) | 70, 122, 178, 303 |
| MboII | GAAGA | 3 cut(s) | 104, 185, 785 |
| MflI | RGATCY | 2 cut(s) | 122, 303 |
| MhlI | GDGCHC | 2 cut(s) | 610, 686 |
| MluCI | AATT | 1 cut(s) | 811 |
| MmeI | TCCRAC | 4 cut(s) | 62, 333, 346, 363 |
| MnlI | CCTC | 6 cut(s) | 7, 37, 55, 322, 673, 851 |
| Mph1103I | ATGCAT | 1 cut(s) | 558 |
| MroNI | GCCGGC | 1 cut(s) | 53 |
| MroXI | GAANNNNTTC | 1 cut(s) | 149 |
| MseI | TTAA | 4 cut(s) | 216, 417, 660, 919 |
| MspA1I | CMGCKG | 1 cut(s) | 881 |
| MspI | CCGG | 5 cut(s) | 54, 610, 713, 725, 830 |
| MspR9I | CCNGG | 5 cut(s) | 158, 483, 610, 611, 830 |
| MvaI | CCWGG | 2 cut(s) | 158, 483 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 44, 540, 690, 787 |
| NaeI | GCCGGC | 1 cut(s) | 55 |
| NciI | CCSGG | 3 cut(s) | 610, 611, 830 |
| NdeII | GATC | 4 cut(s) | 70, 122, 178, 303 |
| NgoMIV | GCCGGC | 1 cut(s) | 53 |
| NlaIII | CATG | 6 cut(s) | 224, 409, 437, 543, 560, 602 |
| NlaIV | GGNNCC | 2 cut(s) | 643, 748 |
| NmuCI | GTSAC | 1 cut(s) | 19 |
| NsiI | ATGCAT | 1 cut(s) | 558 |
| NspI | RCATGY | 1 cut(s) | 602 |
| PaeR7I | CTCGAG | 1 cut(s) | 603 |
| PagI | TCATGA | 1 cut(s) | 433 |
| PdiI | GCCGGC | 1 cut(s) | 55 |
| PdmI | GAANNNNTTC | 1 cut(s) | 149 |
| PinAI | ACCGGT | 1 cut(s) | 712 |
| PkrI | GCNGC | 3 cut(s) | 37, 237, 880 |
| PpuMI | RGGWCCY | 1 cut(s) | 331 |
| Psp5II | RGGWCCY | 1 cut(s) | 331 |
| Psp6I | CCWGG | 2 cut(s) | 156, 481 |
| PspGI | CCWGG | 2 cut(s) | 156, 481 |
| PspN4I | GGNNCC | 2 cut(s) | 643, 748 |
| PspPI | GGNCC | 3 cut(s) | 203, 331, 746 |
| PspPPI | RGGWCCY | 1 cut(s) | 331 |
| PspXI | VCTCGAGB | 1 cut(s) | 603 |
| PstI | CTGCAG | 2 cut(s) | 462, 783 |
| PsuI | RGATCY | 2 cut(s) | 122, 303 |
| RsaI | GTAC | 1 cut(s) | 705 |
| RsaNI | GTAC | 1 cut(s) | 704 |
| SaqAI | TTAA | 4 cut(s) | 216, 417, 660, 919 |
| SatI | GCNGC | 3 cut(s) | 36, 236, 879 |
| Sau3AI | GATC | 4 cut(s) | 70, 122, 178, 303 |
| Sau96I | GGNCC | 3 cut(s) | 203, 331, 746 |
| ScrFI | CCNGG | 5 cut(s) | 158, 483, 610, 611, 830 |
| SduI | GDGCHC | 2 cut(s) | 610, 686 |
| SfcI | CTRYAG | 3 cut(s) | 458, 779, 882 |
| Sfr274I | CTCGAG | 1 cut(s) | 603 |
| SgrAI | CRCCGGYG | 1 cut(s) | 712 |
| SinI | GGWCC | 2 cut(s) | 203, 331 |
| SlaI | CTCGAG | 1 cut(s) | 603 |
| SmaI | CCCGGG | 1 cut(s) | 611 |
| SmlI | CTYRAG | 2 cut(s) | 603, 652 |
| SmoI | CTYRAG | 2 cut(s) | 603, 652 |
| SrfI | GCCCGGGC | 1 cut(s) | 611 |
| Sse9I | AATT | 1 cut(s) | 811 |
| SsiI | CCGC | 4 cut(s) | 472, 691, 722, 879 |
| SspMI | CTAG | 2 cut(s) | 335, 911 |
| StyD4I | CCNGG | 5 cut(s) | 156, 481, 608, 609, 828 |
| TaaI | ACNGT | 3 cut(s) | 396, 441, 894 |
| TaiI | ACGT | 2 cut(s) | 178, 766 |
| TaqI | TCGA | 3 cut(s) | 69, 181, 604 |
| TasI | AATT | 1 cut(s) | 811 |
| TatI | WGTACW | 1 cut(s) | 703 |
| TauI | GCSGC | 1 cut(s) | 881 |
| Tru1I | TTAA | 4 cut(s) | 216, 417, 660, 919 |
| Tru9I | TTAA | 4 cut(s) | 216, 417, 660, 919 |
| TscAI | CASTG | 1 cut(s) | 841 |
| TseFI | GTSAC | 1 cut(s) | 19 |
| TseI | GCWGC | 2 cut(s) | 35, 235 |
| Tsp45I | GTSAC | 1 cut(s) | 19 |
| TspDTI | ATGAA | 4 cut(s) | 142, 402, 450, 664 |
| TspGWI | ACGGA | 1 cut(s) | 195 |
| TspMI | CCCGGG | 1 cut(s) | 609 |
| TspRI | CASTG | 1 cut(s) | 841 |
| VpaK11BI | GGWCC | 2 cut(s) | 203, 331 |
| XapI | RAATTY | 1 cut(s) | 811 |
| XceI | RCATGY | 1 cut(s) | 602 |
| XhoI | CTCGAG | 1 cut(s) | 603 |
| XmaI | CCCGGG | 1 cut(s) | 609 |
| XmnI | GAANNNNTTC | 1 cut(s) | 149 |
| XspI | CTAG | 2 cut(s) | 335, 911 |
| Zsp2I | ATGCAT | 1 cut(s) | 558 |