ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 404 |
| Acc36I | ACCTGC | 1 cut(s) | 144 |
| AccB1I | GGYRCC | 2 cut(s) | 846, 1081 |
| AccII | CGCG | 1 cut(s) | 145 |
| AciI | CCGC | 3 cut(s) | 821, 887, 963 |
| AclWI | GGATC | 4 cut(s) | 288, 362, 367, 675 |
| AcoI | YGGCCR | 1 cut(s) | 465 |
| AcsI | RAATTY | 4 cut(s) | 221, 313, 600, 769 |
| AcuI | CTGAAG | 1 cut(s) | 881 |
| AcyI | GRCGYC | 1 cut(s) | 847 |
| AfaI | GTAC | 4 cut(s) | 30, 392, 428, 476 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 277, 467, 743, 956 |
| AgsI | TTSAA | 6 cut(s) | 215, 233, 727, 782, 878, 1150 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 560, 592 |
| AleI | CACNNNNGTG | 1 cut(s) | 461 |
| AluBI | AGCT | 8 cut(s) | 172, 189, 571, 701, 807, 954, 1016, 1097 |
| AluI | AGCT | 8 cut(s) | 172, 189, 571, 701, 807, 954, 1016, 1097 |
| AlwI | GGATC | 4 cut(s) | 288, 362, 367, 675 |
| AoxI | GGCC | 1 cut(s) | 465 |
| ApeKI | GCWGC | 1 cut(s) | 571 |
| ApoI | RAATTY | 4 cut(s) | 221, 313, 600, 769 |
| AscI | GGCGCGCC | 1 cut(s) | 143 |
| AspLEI | GCGC | 4 cut(s) | 145, 147, 405, 849 |
| AspS9I | GGNCC | 2 cut(s) | 305, 959 |
| AsuC2I | CCSGG | 1 cut(s) | 705 |
| AsuHPI | GGTGA | 2 cut(s) | 217, 1076 |
| AvaII | GGWCC | 2 cut(s) | 305, 959 |
| AxyI | CCTNAGG | 1 cut(s) | 56 |
| BaeGI | GKGCMC | 1 cut(s) | 941 |
| BanI | GGYRCC | 2 cut(s) | 846, 1081 |
| BbvI | GCAGC | 1 cut(s) | 558 |
| BccI | CCATC | 2 cut(s) | 344, 1147 |
| BceAI | ACGGC | 1 cut(s) | 64 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 156, 190, 367, 401 |
| BclI | TGATCA | 1 cut(s) | 444 |
| BcnI | CCSGG | 1 cut(s) | 705 |
| BfaI | CTAG | 4 cut(s) | 24, 519, 843, 951 |
| BfmI | CTRYAG | 1 cut(s) | 897 |
| BfoI | RGCGCY | 1 cut(s) | 850 |
| BfuAI | ACCTGC | 1 cut(s) | 144 |
| BglII | AGATCT | 1 cut(s) | 34 |
| BisI | GCNGC | 1 cut(s) | 572 |
| BlsI | GCNGC | 1 cut(s) | 573 |
| Bme1390I | CCNGG | 1 cut(s) | 705 |
| Bme18I | GGWCC | 2 cut(s) | 305, 959 |
| BmgT120I | GGNCC | 2 cut(s) | 305, 959 |
| BmiI | GGNNCC | 4 cut(s) | 109, 848, 961, 1083 |
| BmrFI | CCNGG | 1 cut(s) | 705 |
| BmrI | ACTGGG | 1 cut(s) | 758 |
| BmsI | GCATC | 3 cut(s) | 414, 635, 1017 |
| BmuI | ACTGGG | 1 cut(s) | 758 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 56, 88 |
| Bpu10I | CCTNAGC | 2 cut(s) | 103, 955 |
| BpuEI | CTTGAG | 2 cut(s) | 257, 1013 |
| BpuMI | CCSGG | 1 cut(s) | 705 |
| BsaHI | GRCGYC | 1 cut(s) | 847 |
| BsaJI | CCNNGG | 2 cut(s) | 308, 1119 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 277, 467, 743, 956 |
| Bse118I | RCCGGY | 1 cut(s) | 467 |
| Bse1I | ACTGG | 1 cut(s) | 753 |
| Bse21I | CCTNAGG | 1 cut(s) | 56 |
| Bse3DI | GCAATG | 2 cut(s) | 383, 1124 |
| BseDI | CCNNGG | 2 cut(s) | 308, 1119 |
| BseGI | GGATG | 3 cut(s) | 405, 586, 1003 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 277, 467, 743, 956 |
| BseMI | GCAATG | 2 cut(s) | 383, 1124 |
| BseMII | CTCAG | 3 cut(s) | 117, 274, 969 |
| BseNI | ACTGG | 1 cut(s) | 753 |
| BsePI | GCGCGC | 1 cut(s) | 143 |
| BseSI | GKGCMC | 1 cut(s) | 941 |
| BseXI | GCAGC | 1 cut(s) | 558 |
| Bsh1236I | CGCG | 1 cut(s) | 145 |
| BshFI | GGCC | 1 cut(s) | 467 |
| BshNI | GGYRCC | 2 cut(s) | 846, 1081 |
| BsiSI | CCGG | 3 cut(s) | 329, 468, 704 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 277, 467, 743, 956 |
| BsnI | GGCC | 1 cut(s) | 467 |
| Bsp1286I | GDGCHC | 1 cut(s) | 941 |
| Bsp143I | GATC | 7 cut(s) | 34, 91, 280, 354, 372, 444, 667 |
| BspACI | CCGC | 3 cut(s) | 821, 887, 963 |
| BspANI | GGCC | 1 cut(s) | 467 |
| BspCNI | CTCAG | 3 cut(s) | 116, 273, 968 |
| BspFNI | CGCG | 1 cut(s) | 145 |
| BspHI | TCATGA | 1 cut(s) | 535 |
| BspLI | GGNNCC | 4 cut(s) | 109, 848, 961, 1083 |
| BspMAI | CTGCAG | 1 cut(s) | 901 |
| BspMI | ACCTGC | 1 cut(s) | 144 |
| BspPI | GGATC | 4 cut(s) | 288, 362, 367, 675 |
| BspT107I | GGYRCC | 2 cut(s) | 846, 1081 |
| BsrDI | GCAATG | 2 cut(s) | 383, 1124 |
| BsrFI | RCCGGY | 1 cut(s) | 467 |
| BsrI | ACTGG | 1 cut(s) | 753 |
| BssAI | RCCGGY | 1 cut(s) | 467 |
| BssECI | CCNNGG | 2 cut(s) | 308, 1119 |
| BssHII | GCGCGC | 1 cut(s) | 143 |
| BssMI | GATC | 7 cut(s) | 34, 91, 280, 354, 372, 444, 667 |
| BssNI | GRCGYC | 1 cut(s) | 847 |
| BssT1I | CCWWGG | 2 cut(s) | 308, 1119 |
| Bst6I | CTCTTC | 2 cut(s) | 237, 1157 |
| BstACI | GRCGYC | 1 cut(s) | 847 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 945 |
| BstC8I | GCNNGC | 4 cut(s) | 125, 141, 145, 809 |
| BstDEI | CTNAG | 6 cut(s) | 40, 56, 103, 260, 908, 955 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 275, 741, 954 |
| BstF5I | GGATG | 3 cut(s) | 405, 586, 1003 |
| BstFNI | CGCG | 1 cut(s) | 145 |
| BstH2I | RGCGCY | 1 cut(s) | 850 |
| BstHHI | GCGC | 4 cut(s) | 145, 147, 405, 849 |
| BstKTI | GATC | 7 cut(s) | 37, 94, 283, 357, 375, 447, 670 |
| BstMBI | GATC | 7 cut(s) | 34, 91, 280, 354, 372, 444, 667 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 945 |
| BstNSI | RCATGY | 1 cut(s) | 923 |
| BstSCI | CCNGG | 1 cut(s) | 703 |
| BstSFI | CTRYAG | 1 cut(s) | 897 |
| BstSLI | GKGCMC | 1 cut(s) | 941 |
| BstUI | CGCG | 1 cut(s) | 145 |
| BstV1I | GCAGC | 1 cut(s) | 558 |
| BstX2I | RGATCY | 2 cut(s) | 34, 372 |
| BstYI | RGATCY | 2 cut(s) | 34, 372 |
| Bsu36I | CCTNAGG | 1 cut(s) | 56 |
| BsuRI | GGCC | 1 cut(s) | 467 |
| BtsCI | GGATG | 3 cut(s) | 405, 586, 1003 |
| BtsIMutI | CAGTG | 1 cut(s) | 483 |
| BveI | ACCTGC | 1 cut(s) | 144 |
| Cac8I | GCNNGC | 4 cut(s) | 125, 141, 145, 809 |
| CciI | TCATGA | 1 cut(s) | 535 |
| CfoI | GCGC | 4 cut(s) | 145, 147, 405, 849 |
| Cfr10I | RCCGGY | 1 cut(s) | 467 |
| Cfr13I | GGNCC | 2 cut(s) | 305, 959 |
| Csp6I | GTAC | 4 cut(s) | 29, 391, 427, 475 |
| CviAII | CATG | 5 cut(s) | 536, 622, 659, 760, 920 |
| CviQI | GTAC | 4 cut(s) | 29, 391, 427, 475 |
| DdeI | CTNAG | 6 cut(s) | 40, 56, 103, 260, 908, 955 |
| DinI | GGCGCC | 1 cut(s) | 848 |
| DpnI | GATC | 7 cut(s) | 36, 93, 282, 356, 374, 446, 669 |
| DpnII | GATC | 7 cut(s) | 34, 91, 280, 354, 372, 444, 667 |
| EaeI | YGGCCR | 1 cut(s) | 465 |
| Eam1104I | CTCTTC | 2 cut(s) | 237, 1157 |
| EarI | CTCTTC | 2 cut(s) | 237, 1157 |
| Eco130I | CCWWGG | 2 cut(s) | 308, 1119 |
| Eco47I | GGWCC | 2 cut(s) | 305, 959 |
| Eco57I | CTGAAG | 1 cut(s) | 881 |
| Eco81I | CCTNAGG | 1 cut(s) | 56 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 275, 741, 954 |
| EcoO109I | RGGNCCY | 2 cut(s) | 305, 959 |
| EcoT14I | CCWWGG | 2 cut(s) | 308, 1119 |
| EgeI | GGCGCC | 1 cut(s) | 848 |
| EheI | GGCGCC | 1 cut(s) | 848 |
| ErhI | CCWWGG | 2 cut(s) | 308, 1119 |
| FaeI | CATG | 5 cut(s) | 539, 625, 662, 763, 923 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 29 |
| FatI | CATG | 5 cut(s) | 535, 621, 658, 759, 919 |
| FauI | CCCGC | 2 cut(s) | 814, 970 |
| FbaI | TGATCA | 1 cut(s) | 444 |
| Fnu4HI | GCNGC | 1 cut(s) | 572 |
| FokI | GGATG | 3 cut(s) | 392, 593, 1010 |
| Fsp4HI | GCNGC | 1 cut(s) | 572 |
| FspAI | RTGCGCAY | 1 cut(s) | 404 |
| FspBI | CTAG | 4 cut(s) | 24, 519, 843, 951 |
| FspI | TGCGCA | 1 cut(s) | 404 |
| GlaI | GCGC | 4 cut(s) | 144, 146, 404, 848 |
| GluI | GCNGC | 1 cut(s) | 572 |
| HaeII | RGCGCY | 1 cut(s) | 850 |
| HaeIII | GGCC | 1 cut(s) | 467 |
| HapII | CCGG | 3 cut(s) | 329, 468, 704 |
| HhaI | GCGC | 4 cut(s) | 145, 147, 405, 849 |
| Hin1I | GRCGYC | 1 cut(s) | 847 |
| Hin1II | CATG | 5 cut(s) | 539, 625, 662, 763, 923 |
| Hin6I | GCGC | 4 cut(s) | 143, 145, 403, 847 |
| HinP1I | GCGC | 4 cut(s) | 143, 145, 403, 847 |
| HincII | GTYRAC | 1 cut(s) | 84 |
| HindII | GTYRAC | 1 cut(s) | 84 |
| HindIII | AAGCTT | 1 cut(s) | 187 |
| HinfI | GANTC | 8 cut(s) | 247, 789, 829, 890, 988, 1019, 1046, 1073 |
| HpaII | CCGG | 3 cut(s) | 329, 468, 704 |
| HphI | GGTGA | 2 cut(s) | 217, 1076 |
| Hpy166II | GTNNAC | 2 cut(s) | 84, 638 |
| Hpy188I | TCNGA | 5 cut(s) | 183, 285, 561, 651, 861 |
| Hpy188III | TCNNGA | 9 cut(s) | 105, 197, 274, 376, 536, 878, 957, 992, 1159 |
| Hpy8I | GTNNAC | 2 cut(s) | 84, 638 |
| HpyAV | CCTTC | 6 cut(s) | 209, 271, 508, 589, 729, 928 |
| HpyCH4V | TGCA | 6 cut(s) | 167, 545, 574, 712, 899, 1057 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 945 |
| HpyF3I | CTNAG | 6 cut(s) | 40, 56, 103, 260, 908, 955 |
| Hsp92I | GRCGYC | 1 cut(s) | 847 |
| Hsp92II | CATG | 5 cut(s) | 539, 625, 662, 763, 923 |
| HspAI | GCGC | 4 cut(s) | 143, 145, 403, 847 |
| KasI | GGCGCC | 1 cut(s) | 846 |
| Ksp22I | TGATCA | 1 cut(s) | 444 |
| Kzo9I | GATC | 7 cut(s) | 34, 91, 280, 354, 372, 444, 667 |
| LmnI | GCTCC | 4 cut(s) | 107, 331, 706, 1141 |
| Lsp1109I | GCAGC | 1 cut(s) | 558 |
| LweI | GCATC | 3 cut(s) | 414, 635, 1017 |
| MaeI | CTAG | 4 cut(s) | 24, 519, 843, 951 |
| MaeIII | GTNAC | 1 cut(s) | 730 |
| MalI | GATC | 7 cut(s) | 36, 93, 282, 356, 374, 446, 669 |
| MboI | GATC | 7 cut(s) | 34, 91, 280, 354, 372, 444, 667 |
| MboII | GAAGA | 6 cut(s) | 248, 254, 874, 877, 893, 1162 |
| MfeI | CAATTG | 1 cut(s) | 575 |
| MflI | RGATCY | 2 cut(s) | 34, 372 |
| MhlI | GDGCHC | 1 cut(s) | 941 |
| MluCI | AATT | 9 cut(s) | 221, 313, 494, 575, 600, 630, 769, 852, 869 |
| Mly113I | GGCGCC | 1 cut(s) | 847 |
| MlyI | GAGTC | 3 cut(s) | 783, 823, 884 |
| MseI | TTAA | 1 cut(s) | 47 |
| MslI | CAYNNNNRTG | 2 cut(s) | 461, 924 |
| MspI | CCGG | 3 cut(s) | 329, 468, 704 |
| MspR9I | CCNGG | 1 cut(s) | 705 |
| MunI | CAATTG | 1 cut(s) | 575 |
| MvnI | CGCG | 1 cut(s) | 145 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 945 |
| NarI | GGCGCC | 1 cut(s) | 847 |
| NciI | CCSGG | 1 cut(s) | 705 |
| NdeII | GATC | 7 cut(s) | 34, 91, 280, 354, 372, 444, 667 |
| NlaIII | CATG | 5 cut(s) | 539, 625, 662, 763, 923 |
| NlaIV | GGNNCC | 4 cut(s) | 109, 848, 961, 1083 |
| NmeAIII | GCCGAG | 1 cut(s) | 155 |
| NsbI | TGCGCA | 1 cut(s) | 404 |
| NspI | RCATGY | 1 cut(s) | 923 |
| OliI | CACNNNNGTG | 1 cut(s) | 461 |
| PagI | TCATGA | 1 cut(s) | 535 |
| PalAI | GGCGCGCC | 1 cut(s) | 143 |
| PauI | GCGCGC | 1 cut(s) | 143 |
| PfeI | GAWTC | 5 cut(s) | 247, 988, 1019, 1046, 1073 |
| PkrI | GCNGC | 1 cut(s) | 573 |
| PleI | GAGTC | 3 cut(s) | 783, 823, 884 |
| PluTI | GGCGCC | 1 cut(s) | 850 |
| PpsI | GAGTC | 3 cut(s) | 783, 823, 884 |
| PpuMI | RGGWCCY | 2 cut(s) | 305, 959 |
| Psp5II | RGGWCCY | 2 cut(s) | 305, 959 |
| PspN4I | GGNNCC | 4 cut(s) | 109, 848, 961, 1083 |
| PspPI | GGNCC | 2 cut(s) | 305, 959 |
| PspPPI | RGGWCCY | 2 cut(s) | 305, 959 |
| PstI | CTGCAG | 1 cut(s) | 901 |
| PsuI | RGATCY | 2 cut(s) | 34, 372 |
| PteI | GCGCGC | 1 cut(s) | 143 |
| RsaI | GTAC | 4 cut(s) | 30, 392, 428, 476 |
| RsaNI | GTAC | 4 cut(s) | 29, 391, 427, 475 |
| RseI | CAYNNNNRTG | 2 cut(s) | 461, 924 |
| SaqAI | TTAA | 1 cut(s) | 47 |
| SatI | GCNGC | 1 cut(s) | 572 |
| Sau3AI | GATC | 7 cut(s) | 34, 91, 280, 354, 372, 444, 667 |
| Sau96I | GGNCC | 2 cut(s) | 305, 959 |
| SchI | GAGTC | 3 cut(s) | 783, 823, 884 |
| ScrFI | CCNGG | 1 cut(s) | 705 |
| SduI | GDGCHC | 1 cut(s) | 941 |
| SfaNI | GCATC | 3 cut(s) | 414, 635, 1017 |
| SfcI | CTRYAG | 1 cut(s) | 897 |
| SfoI | GGCGCC | 1 cut(s) | 848 |
| SgsI | GGCGCGCC | 1 cut(s) | 143 |
| SinI | GGWCC | 2 cut(s) | 305, 959 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 461, 924 |
| SmlI | CTYRAG | 2 cut(s) | 272, 992 |
| SmoI | CTYRAG | 2 cut(s) | 272, 992 |
| Sse9I | AATT | 9 cut(s) | 221, 313, 494, 575, 600, 630, 769, 852, 869 |
| SsiI | CCGC | 3 cut(s) | 821, 887, 963 |
| SspDI | GGCGCC | 1 cut(s) | 846 |
| SspMI | CTAG | 4 cut(s) | 24, 519, 843, 951 |
| StyD4I | CCNGG | 1 cut(s) | 703 |
| StyI | CCWWGG | 2 cut(s) | 308, 1119 |
| TaqI | TCGA | 2 cut(s) | 196, 480 |
| TasI | AATT | 9 cut(s) | 221, 313, 494, 575, 600, 630, 769, 852, 869 |
| TatI | WGTACW | 4 cut(s) | 28, 390, 426, 474 |
| TfiI | GAWTC | 5 cut(s) | 247, 988, 1019, 1046, 1073 |
| Tru1I | TTAA | 1 cut(s) | 47 |
| Tru9I | TTAA | 1 cut(s) | 47 |
| TscAI | CASTG | 1 cut(s) | 490 |
| TseI | GCWGC | 1 cut(s) | 571 |
| TspDTI | ATGAA | 5 cut(s) | 6, 308, 630, 1014, 1053 |
| TspRI | CASTG | 1 cut(s) | 490 |
| VpaK11BI | GGWCC | 2 cut(s) | 305, 959 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 275, 741, 954 |
| XapI | RAATTY | 4 cut(s) | 221, 313, 600, 769 |
| XceI | RCATGY | 1 cut(s) | 923 |
| XspI | CTAG | 4 cut(s) | 24, 519, 843, 951 |