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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 745 |
| AccB1I | GGYRCC | 1 cut(s) | 745 |
| AciI | CCGC | 2 cut(s) | 530, 632 |
| AclWI | GGATC | 2 cut(s) | 240, 562 |
| AcsI | RAATTY | 3 cut(s) | 163, 186, 302 |
| AfaI | GTAC | 3 cut(s) | 279, 678, 747 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 190, 526, 638 |
| AflIII | ACRYGT | 1 cut(s) | 449 |
| AgsI | TTSAA | 5 cut(s) | 169, 218, 311, 425, 586 |
| AluBI | AGCT | 4 cut(s) | 30, 325, 547, 662 |
| AluI | AGCT | 4 cut(s) | 30, 325, 547, 662 |
| Alw21I | GWGCWC | 2 cut(s) | 100, 549 |
| Alw26I | GTCTC | 1 cut(s) | 617 |
| AlwI | GGATC | 2 cut(s) | 240, 562 |
| AoxI | GGCC | 2 cut(s) | 126, 131 |
| ApeKI | GCWGC | 1 cut(s) | 158 |
| ApoI | RAATTY | 3 cut(s) | 163, 186, 302 |
| Asp718I | GGTACC | 1 cut(s) | 745 |
| AspS9I | GGNCC | 3 cut(s) | 127, 290, 316 |
| AsuC2I | CCSGG | 1 cut(s) | 130 |
| AsuHPI | GGTGA | 2 cut(s) | 500, 516 |
| AsuII | TTCGAA | 1 cut(s) | 374 |
| AvaII | GGWCC | 2 cut(s) | 290, 316 |
| BanI | GGYRCC | 1 cut(s) | 745 |
| BanII | GRGCYC | 1 cut(s) | 549 |
| BauI | CACGAG | 1 cut(s) | 431 |
| Bbv12I | GWGCWC | 2 cut(s) | 100, 549 |
| BbvI | GCAGC | 1 cut(s) | 145 |
| BccI | CCATC | 3 cut(s) | 277, 529, 584 |
| BceAI | ACGGC | 2 cut(s) | 188, 742 |
| BcnI | CCSGG | 1 cut(s) | 130 |
| BcoDI | GTCTC | 1 cut(s) | 617 |
| BfaI | CTAG | 1 cut(s) | 542 |
| BisI | GCNGC | 2 cut(s) | 159, 531 |
| BlsI | GCNGC | 2 cut(s) | 160, 532 |
| Bme1390I | CCNGG | 1 cut(s) | 130 |
| Bme18I | GGWCC | 2 cut(s) | 290, 316 |
| BmgT120I | GGNCC | 3 cut(s) | 127, 290, 316 |
| BmiI | GGNNCC | 1 cut(s) | 747 |
| BmrFI | CCNGG | 1 cut(s) | 130 |
| BmrI | ACTGGG | 1 cut(s) | 106 |
| BmsI | GCATC | 1 cut(s) | 322 |
| BmuI | ACTGGG | 1 cut(s) | 106 |
| BpmI | CTGGAG | 1 cut(s) | 360 |
| Bpu14I | TTCGAA | 1 cut(s) | 374 |
| BpuMI | CCSGG | 1 cut(s) | 130 |
| BsaI | GGTCTC | 1 cut(s) | 617 |
| BsaJI | CCNNGG | 5 cut(s) | 81, 259, 293, 607, 750 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 190, 526, 638 |
| Bse118I | RCCGGY | 2 cut(s) | 526, 634 |
| Bse1I | ACTGG | 4 cut(s) | 112, 318, 343, 510 |
| Bse3DI | GCAATG | 1 cut(s) | 736 |
| BseDI | CCNNGG | 5 cut(s) | 81, 259, 293, 607, 750 |
| BseGI | GGATG | 1 cut(s) | 595 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 190, 526, 638 |
| BseMI | GCAATG | 1 cut(s) | 736 |
| BseNI | ACTGG | 4 cut(s) | 112, 318, 343, 510 |
| BseRI | GAGGAG | 2 cut(s) | 276, 672 |
| BseXI | GCAGC | 1 cut(s) | 145 |
| BsgI | GTGCAG | 1 cut(s) | 723 |
| BshFI | GGCC | 2 cut(s) | 128, 133 |
| BshNI | GGYRCC | 1 cut(s) | 745 |
| BsiHKAI | GWGCWC | 2 cut(s) | 100, 549 |
| BsiSI | CCGG | 3 cut(s) | 130, 527, 635 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 190, 526, 638 |
| BsmAI | GTCTC | 1 cut(s) | 617 |
| BsmI | GAATGC | 1 cut(s) | 160 |
| BsnI | GGCC | 2 cut(s) | 128, 133 |
| Bso31I | GGTCTC | 1 cut(s) | 617 |
| Bsp119I | TTCGAA | 1 cut(s) | 374 |
| Bsp1286I | GDGCHC | 2 cut(s) | 100, 549 |
| Bsp143I | GATC | 3 cut(s) | 224, 232, 554 |
| Bsp19I | CCATGG | 2 cut(s) | 81, 293 |
| BspACI | CCGC | 2 cut(s) | 530, 632 |
| BspANI | GGCC | 2 cut(s) | 128, 133 |
| BspLI | GGNNCC | 1 cut(s) | 747 |
| BspPI | GGATC | 2 cut(s) | 240, 562 |
| BspT104I | TTCGAA | 1 cut(s) | 374 |
| BspT107I | GGYRCC | 1 cut(s) | 745 |
| BspTNI | GGTCTC | 1 cut(s) | 617 |
| BsrDI | GCAATG | 1 cut(s) | 736 |
| BsrFI | RCCGGY | 2 cut(s) | 526, 634 |
| BsrI | ACTGG | 4 cut(s) | 112, 318, 343, 510 |
| BssAI | RCCGGY | 2 cut(s) | 526, 634 |
| BssECI | CCNNGG | 5 cut(s) | 81, 259, 293, 607, 750 |
| BssMI | GATC | 3 cut(s) | 224, 232, 554 |
| BssSI | CACGAG | 1 cut(s) | 431 |
| BssT1I | CCWWGG | 3 cut(s) | 81, 293, 607 |
| Bst2BI | CACGAG | 1 cut(s) | 431 |
| Bst6I | CTCTTC | 1 cut(s) | 82 |
| BstBI | TTCGAA | 1 cut(s) | 374 |
| BstDEI | CTNAG | 1 cut(s) | 663 |
| BstDSI | CCRYGG | 3 cut(s) | 81, 293, 750 |
| BstF5I | GGATG | 1 cut(s) | 595 |
| BstKTI | GATC | 3 cut(s) | 227, 235, 557 |
| BstMAI | GTCTC | 1 cut(s) | 617 |
| BstMBI | GATC | 3 cut(s) | 224, 232, 554 |
| BstNSI | RCATGY | 2 cut(s) | 368, 453 |
| BstSCI | CCNGG | 1 cut(s) | 128 |
| BstV1I | GCAGC | 1 cut(s) | 145 |
| BsuRI | GGCC | 2 cut(s) | 128, 133 |
| BtgI | CCRYGG | 3 cut(s) | 81, 293, 750 |
| BtsCI | GGATG | 1 cut(s) | 595 |
| BtsI | GCAGTG | 1 cut(s) | 510 |
| BtsIMutI | CAGTG | 1 cut(s) | 510 |
| Cfr10I | RCCGGY | 2 cut(s) | 526, 634 |
| Cfr13I | GGNCC | 3 cut(s) | 127, 290, 316 |
| Csp6I | GTAC | 3 cut(s) | 278, 677, 746 |
| CviAII | CATG | 4 cut(s) | 82, 294, 365, 450 |
| CviQI | GTAC | 3 cut(s) | 278, 677, 746 |
| DdeI | CTNAG | 1 cut(s) | 663 |
| DpnI | GATC | 3 cut(s) | 226, 234, 556 |
| DpnII | GATC | 3 cut(s) | 224, 232, 554 |
| Eam1104I | CTCTTC | 1 cut(s) | 82 |
| EarI | CTCTTC | 1 cut(s) | 82 |
| EciI | GGCGGA | 1 cut(s) | 621 |
| Ecl136II | GAGCTC | 1 cut(s) | 547 |
| Eco130I | CCWWGG | 3 cut(s) | 81, 293, 607 |
| Eco24I | GRGCYC | 1 cut(s) | 549 |
| Eco31I | GGTCTC | 1 cut(s) | 617 |
| Eco47I | GGWCC | 2 cut(s) | 290, 316 |
| Eco53kI | GAGCTC | 1 cut(s) | 547 |
| EcoICRI | GAGCTC | 1 cut(s) | 547 |
| EcoT14I | CCWWGG | 3 cut(s) | 81, 293, 607 |
| EcoT38I | GRGCYC | 1 cut(s) | 549 |
| ErhI | CCWWGG | 3 cut(s) | 81, 293, 607 |
| FaeI | CATG | 4 cut(s) | 85, 297, 368, 453 |
| FaiI | YATR | 7 cut(s) | 83, 295, 350, 366, 451, 468, 481 |
| FatI | CATG | 4 cut(s) | 81, 293, 364, 449 |
| Fnu4HI | GCNGC | 2 cut(s) | 159, 531 |
| FokI | GGATG | 1 cut(s) | 602 |
| FriOI | GRGCYC | 1 cut(s) | 549 |
| Fsp4HI | GCNGC | 2 cut(s) | 159, 531 |
| FspBI | CTAG | 1 cut(s) | 542 |
| GluI | GCNGC | 2 cut(s) | 159, 531 |
| GsuI | CTGGAG | 1 cut(s) | 360 |
| HaeIII | GGCC | 2 cut(s) | 128, 133 |
| HapII | CCGG | 3 cut(s) | 130, 527, 635 |
| Hin1II | CATG | 4 cut(s) | 85, 297, 368, 453 |
| HindIII | AAGCTT | 2 cut(s) | 28, 323 |
| HpaII | CCGG | 3 cut(s) | 130, 527, 635 |
| HphI | GGTGA | 2 cut(s) | 500, 516 |
| Hpy166II | GTNNAC | 3 cut(s) | 70, 412, 754 |
| Hpy188I | TCNGA | 2 cut(s) | 138, 260 |
| Hpy188III | TCNNGA | 2 cut(s) | 230, 573 |
| Hpy8I | GTNNAC | 3 cut(s) | 70, 412, 754 |
| HpyAV | CCTTC | 1 cut(s) | 636 |
| HpyCH4V | TGCA | 6 cut(s) | 161, 335, 368, 444, 497, 704 |
| HpyF3I | CTNAG | 1 cut(s) | 663 |
| Hsp92II | CATG | 4 cut(s) | 85, 297, 368, 453 |
| KpnI | GGTACC | 1 cut(s) | 749 |
| Kzo9I | GATC | 3 cut(s) | 224, 232, 554 |
| LmnI | GCTCC | 3 cut(s) | 40, 95, 659 |
| Lsp1109I | GCAGC | 1 cut(s) | 145 |
| LweI | GCATC | 1 cut(s) | 322 |
| MaeI | CTAG | 1 cut(s) | 542 |
| MaeIII | GTNAC | 2 cut(s) | 19, 508 |
| MalI | GATC | 3 cut(s) | 226, 234, 556 |
| MboI | GATC | 3 cut(s) | 224, 232, 554 |
| MboII | GAAGA | 4 cut(s) | 69, 113, 409, 620 |
| MhlI | GDGCHC | 2 cut(s) | 100, 549 |
| MluCI | AATT | 5 cut(s) | 163, 186, 302, 369, 581 |
| MmeI | TCCRAC | 2 cut(s) | 30, 619 |
| MnlI | CCTC | 8 cut(s) | 49, 55, 144, 254, 266, 400, 440, 650 |
| MseI | TTAA | 3 cut(s) | 210, 252, 300 |
| MspI | CCGG | 3 cut(s) | 130, 527, 635 |
| MspR9I | CCNGG | 1 cut(s) | 130 |
| Mva1269I | GAATGC | 1 cut(s) | 160 |
| NciI | CCSGG | 1 cut(s) | 130 |
| NcoI | CCATGG | 2 cut(s) | 81, 293 |
| NdeII | GATC | 3 cut(s) | 224, 232, 554 |
| NlaIII | CATG | 4 cut(s) | 85, 297, 368, 453 |
| NlaIV | GGNNCC | 1 cut(s) | 747 |
| NmuCI | GTSAC | 1 cut(s) | 508 |
| NspI | RCATGY | 2 cut(s) | 368, 453 |
| NspV | TTCGAA | 1 cut(s) | 374 |
| PciI | ACATGT | 1 cut(s) | 449 |
| PctI | GAATGC | 1 cut(s) | 160 |
| PkrI | GCNGC | 2 cut(s) | 160, 532 |
| PscI | ACATGT | 1 cut(s) | 449 |
| Psp124BI | GAGCTC | 1 cut(s) | 549 |
| PspN4I | GGNNCC | 1 cut(s) | 747 |
| PspPI | GGNCC | 3 cut(s) | 127, 290, 316 |
| RsaI | GTAC | 3 cut(s) | 279, 678, 747 |
| RsaNI | GTAC | 3 cut(s) | 278, 677, 746 |
| SacI | GAGCTC | 1 cut(s) | 549 |
| SaqAI | TTAA | 3 cut(s) | 210, 252, 300 |
| SatI | GCNGC | 2 cut(s) | 159, 531 |
| Sau3AI | GATC | 3 cut(s) | 224, 232, 554 |
| Sau96I | GGNCC | 3 cut(s) | 127, 290, 316 |
| ScrFI | CCNGG | 1 cut(s) | 130 |
| SduI | GDGCHC | 2 cut(s) | 100, 549 |
| SfaNI | GCATC | 1 cut(s) | 322 |
| SfuI | TTCGAA | 1 cut(s) | 374 |
| SgrAI | CRCCGGYG | 1 cut(s) | 526 |
| SinI | GGWCC | 2 cut(s) | 290, 316 |
| Sse9I | AATT | 5 cut(s) | 163, 186, 302, 369, 581 |
| SsiI | CCGC | 2 cut(s) | 530, 632 |
| SspMI | CTAG | 1 cut(s) | 542 |
| SstI | GAGCTC | 1 cut(s) | 549 |
| StyD4I | CCNGG | 1 cut(s) | 128 |
| StyI | CCWWGG | 3 cut(s) | 81, 293, 607 |
| TaqI | TCGA | 2 cut(s) | 374, 759 |
| TasI | AATT | 5 cut(s) | 163, 186, 302, 369, 581 |
| TauI | GCSGC | 1 cut(s) | 533 |
| Tru1I | TTAA | 3 cut(s) | 210, 252, 300 |
| Tru9I | TTAA | 3 cut(s) | 210, 252, 300 |
| TscAI | CASTG | 1 cut(s) | 517 |
| TseFI | GTSAC | 1 cut(s) | 508 |
| TseI | GCWGC | 1 cut(s) | 158 |
| Tsp45I | GTSAC | 1 cut(s) | 508 |
| TspDTI | ATGAA | 2 cut(s) | 167, 295 |
| TspRI | CASTG | 1 cut(s) | 517 |
| VpaK11BI | GGWCC | 2 cut(s) | 290, 316 |
| XapI | RAATTY | 3 cut(s) | 163, 186, 302 |
| XceI | RCATGY | 2 cut(s) | 368, 453 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 64 |
| XspI | CTAG | 1 cut(s) | 542 |