ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 388 |
| Acc16I | TGCGCA | 1 cut(s) | 396 |
| Acc36I | ACCTGC | 1 cut(s) | 388 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 53 |
| AccIII | TCCGGA | 1 cut(s) | 466 |
| AciI | CCGC | 4 cut(s) | 122, 170, 425, 659 |
| AclWI | GGATC | 2 cut(s) | 96, 198 |
| AcsI | RAATTY | 4 cut(s) | 176, 278, 776, 788 |
| AdeI | CACNNNGTG | 1 cut(s) | 827 |
| AfaI | GTAC | 1 cut(s) | 573 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 53, 458, 459, 532, 533, 848 |
| AgsI | TTSAA | 4 cut(s) | 22, 439, 481, 793 |
| AhlI | ACTAGT | 1 cut(s) | 563 |
| AjnI | CCWGG | 2 cut(s) | 823, 883 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 461, 493 |
| AluBI | AGCT | 5 cut(s) | 62, 199, 374, 413, 880 |
| AluI | AGCT | 5 cut(s) | 62, 199, 374, 413, 880 |
| Alw26I | GTCTC | 3 cut(s) | 74, 546, 554 |
| AlwI | GGATC | 2 cut(s) | 96, 198 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 345 |
| Ama87I | CYCGRG | 1 cut(s) | 213 |
| Aor13HI | TCCGGA | 1 cut(s) | 466 |
| AoxI | GGCC | 2 cut(s) | 448, 909 |
| ApeKI | GCWGC | 1 cut(s) | 43 |
| ApoI | RAATTY | 4 cut(s) | 176, 278, 776, 788 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 254 |
| AspLEI | GCGC | 1 cut(s) | 397 |
| AspS9I | GGNCC | 4 cut(s) | 8, 449, 536, 678 |
| AsuII | TTCGAA | 1 cut(s) | 248 |
| AvaI | CYCGRG | 1 cut(s) | 213 |
| AvaII | GGWCC | 3 cut(s) | 8, 536, 678 |
| BbvI | GCAGC | 1 cut(s) | 55 |
| BccI | CCATC | 4 cut(s) | 47, 479, 590, 694 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 644, 678 |
| BciT130I | CCWGG | 2 cut(s) | 825, 885 |
| BciVI | GTATCC | 1 cut(s) | 643 |
| BcoDI | GTCTC | 3 cut(s) | 74, 546, 554 |
| BcuI | ACTAGT | 1 cut(s) | 563 |
| BfaI | CTAG | 2 cut(s) | 564, 836 |
| BfmI | CTRYAG | 1 cut(s) | 843 |
| BfuAI | ACCTGC | 1 cut(s) | 388 |
| BfuI | GTATCC | 1 cut(s) | 643 |
| BisI | GCNGC | 3 cut(s) | 44, 122, 426 |
| BlsI | GCNGC | 3 cut(s) | 45, 123, 427 |
| Bme1390I | CCNGG | 2 cut(s) | 825, 885 |
| Bme18I | GGWCC | 3 cut(s) | 8, 536, 678 |
| BmeT110I | CYCGRG | 1 cut(s) | 213 |
| BmgT120I | GGNCC | 4 cut(s) | 8, 449, 536, 678 |
| BmiI | GGNNCC | 3 cut(s) | 451, 537, 955 |
| BmrFI | CCNGG | 2 cut(s) | 825, 885 |
| BmsI | GCATC | 3 cut(s) | 117, 196, 846 |
| BpmI | CTGGAG | 1 cut(s) | 746 |
| Bpu14I | TTCGAA | 1 cut(s) | 248 |
| BsaAI | YACGTR | 1 cut(s) | 575 |
| BsaJI | CCNNGG | 3 cut(s) | 11, 502, 645 |
| BsaWI | WCCGGW | 1 cut(s) | 466 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 53, 458, 459, 532, 533, 848 |
| Bse118I | RCCGGY | 1 cut(s) | 421 |
| Bse1I | ACTGG | 1 cut(s) | 451 |
| BseAI | TCCGGA | 1 cut(s) | 466 |
| BseBI | CCWGG | 2 cut(s) | 825, 885 |
| BseDI | CCNNGG | 3 cut(s) | 11, 502, 645 |
| BseGI | GGATG | 1 cut(s) | 490 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 53, 458, 459, 532, 533, 848 |
| BseMII | CTCAG | 1 cut(s) | 549 |
| BseNI | ACTGG | 1 cut(s) | 451 |
| BseXI | GCAGC | 1 cut(s) | 55 |
| BshFI | GGCC | 2 cut(s) | 450, 911 |
| BsiHKCI | CYCGRG | 1 cut(s) | 213 |
| BsiSI | CCGG | 2 cut(s) | 422, 467 |
| BslFI | GGGAC | 1 cut(s) | 549 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 53, 458, 459, 532, 533, 848 |
| BsmAI | GTCTC | 3 cut(s) | 74, 546, 554 |
| BsmBI | CGTCTC | 2 cut(s) | 74, 546 |
| BsmFI | GGGAC | 1 cut(s) | 549 |
| BsnI | GGCC | 2 cut(s) | 450, 911 |
| BsoBI | CYCGRG | 1 cut(s) | 213 |
| Bsp119I | TTCGAA | 1 cut(s) | 248 |
| Bsp13I | TCCGGA | 1 cut(s) | 466 |
| Bsp143I | GATC | 3 cut(s) | 88, 190, 673 |
| BspACI | CCGC | 4 cut(s) | 122, 170, 425, 659 |
| BspANI | GGCC | 2 cut(s) | 450, 911 |
| BspCNI | CTCAG | 1 cut(s) | 550 |
| BspEI | TCCGGA | 1 cut(s) | 466 |
| BspLI | GGNNCC | 3 cut(s) | 451, 537, 955 |
| BspMAI | CTGCAG | 1 cut(s) | 847 |
| BspMI | ACCTGC | 1 cut(s) | 388 |
| BspPI | GGATC | 2 cut(s) | 96, 198 |
| BspT104I | TTCGAA | 1 cut(s) | 248 |
| BsrFI | RCCGGY | 1 cut(s) | 421 |
| BsrI | ACTGG | 1 cut(s) | 451 |
| BssAI | RCCGGY | 1 cut(s) | 421 |
| BssECI | CCNNGG | 3 cut(s) | 11, 502, 645 |
| BssMI | GATC | 3 cut(s) | 88, 190, 673 |
| BssT1I | CCWWGG | 1 cut(s) | 502 |
| Bst2UI | CCWGG | 2 cut(s) | 825, 885 |
| Bst4CI | ACNGT | 2 cut(s) | 12, 540 |
| Bst6I | CTCTTC | 1 cut(s) | 894 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 345 |
| BstBAI | YACGTR | 1 cut(s) | 575 |
| BstBI | TTCGAA | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 3 cut(s) | 126, 663, 843 |
| BstDEI | CTNAG | 3 cut(s) | 457, 558, 666 |
| BstDSI | CCRYGG | 2 cut(s) | 11, 645 |
| BstF5I | GGATG | 1 cut(s) | 490 |
| BstHHI | GCGC | 1 cut(s) | 397 |
| BstKTI | GATC | 3 cut(s) | 91, 193, 676 |
| BstMAI | GTCTC | 3 cut(s) | 74, 546, 554 |
| BstMBI | GATC | 3 cut(s) | 88, 190, 673 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 158, 167, 345, 380 |
| BstNI | CCWGG | 2 cut(s) | 825, 885 |
| BstNSI | RCATGY | 1 cut(s) | 121 |
| BstSCI | CCNGG | 2 cut(s) | 823, 883 |
| BstSFI | CTRYAG | 1 cut(s) | 843 |
| BstSNI | TACGTA | 1 cut(s) | 575 |
| BstV1I | GCAGC | 1 cut(s) | 55 |
| BstX2I | RGATCY | 1 cut(s) | 88 |
| BstYI | RGATCY | 1 cut(s) | 88 |
| BsuI | GTATCC | 1 cut(s) | 643 |
| BsuRI | GGCC | 2 cut(s) | 450, 911 |
| BtgI | CCRYGG | 2 cut(s) | 11, 645 |
| BtsCI | GGATG | 1 cut(s) | 490 |
| BtsIMutI | CAGTG | 2 cut(s) | 111, 444 |
| BveI | ACCTGC | 1 cut(s) | 388 |
| Cac8I | GCNNGC | 3 cut(s) | 126, 663, 843 |
| CaiI | CAGNNNCTG | 1 cut(s) | 345 |
| CfoI | GCGC | 1 cut(s) | 397 |
| Cfr10I | RCCGGY | 1 cut(s) | 421 |
| Cfr13I | GGNCC | 4 cut(s) | 8, 449, 536, 678 |
| CsiI | ACCWGGT | 1 cut(s) | 823 |
| Csp6I | GTAC | 1 cut(s) | 572 |
| CviAII | CATG | 6 cut(s) | 26, 40, 118, 239, 262, 596 |
| CviQI | GTAC | 1 cut(s) | 572 |
| DdeI | CTNAG | 3 cut(s) | 457, 558, 666 |
| DpnI | GATC | 3 cut(s) | 90, 192, 675 |
| DpnII | GATC | 3 cut(s) | 88, 190, 673 |
| DraIII | CACNNNGTG | 1 cut(s) | 827 |
| Eam1104I | CTCTTC | 1 cut(s) | 894 |
| EarI | CTCTTC | 1 cut(s) | 894 |
| Eco105I | TACGTA | 1 cut(s) | 575 |
| Eco130I | CCWWGG | 1 cut(s) | 502 |
| Eco32I | GATATC | 1 cut(s) | 642 |
| Eco47I | GGWCC | 3 cut(s) | 8, 536, 678 |
| Eco88I | CYCGRG | 1 cut(s) | 213 |
| EcoRII | CCWGG | 2 cut(s) | 823, 883 |
| EcoRV | GATATC | 1 cut(s) | 642 |
| EcoT14I | CCWWGG | 1 cut(s) | 502 |
| EcoT22I | ATGCAT | 1 cut(s) | 631 |
| ErhI | CCWWGG | 1 cut(s) | 502 |
| Esp3I | CGTCTC | 2 cut(s) | 74, 546 |
| FaeI | CATG | 6 cut(s) | 29, 43, 121, 242, 265, 599 |
| FaqI | GGGAC | 1 cut(s) | 549 |
| FatI | CATG | 6 cut(s) | 25, 39, 117, 238, 261, 595 |
| FauI | CCCGC | 2 cut(s) | 163, 666 |
| FauNDI | CATATG | 2 cut(s) | 49, 130 |
| Fnu4HI | GCNGC | 3 cut(s) | 44, 122, 426 |
| FokI | GGATG | 1 cut(s) | 497 |
| Fsp4HI | GCNGC | 3 cut(s) | 44, 122, 426 |
| FspBI | CTAG | 2 cut(s) | 564, 836 |
| FspI | TGCGCA | 1 cut(s) | 396 |
| GlaI | GCGC | 1 cut(s) | 396 |
| GluI | GCNGC | 3 cut(s) | 44, 122, 426 |
| GsuI | CTGGAG | 1 cut(s) | 746 |
| HaeIII | GGCC | 2 cut(s) | 450, 911 |
| HapII | CCGG | 2 cut(s) | 422, 467 |
| HhaI | GCGC | 1 cut(s) | 397 |
| Hin1II | CATG | 6 cut(s) | 29, 43, 121, 242, 265, 599 |
| Hin6I | GCGC | 1 cut(s) | 395 |
| HinP1I | GCGC | 1 cut(s) | 395 |
| HindIII | AAGCTT | 1 cut(s) | 372 |
| HinfI | GANTC | 2 cut(s) | 322, 439 |
| HpaII | CCGG | 2 cut(s) | 422, 467 |
| Hpy166II | GTNNAC | 3 cut(s) | 8, 307, 578 |
| Hpy188I | TCNGA | 1 cut(s) | 718 |
| Hpy188III | TCNNGA | 2 cut(s) | 215, 467 |
| Hpy8I | GTNNAC | 3 cut(s) | 8, 307, 578 |
| HpyAV | CCTTC | 3 cut(s) | 265, 463, 754 |
| HpyCH4III | ACNGT | 2 cut(s) | 12, 540 |
| HpyCH4IV | ACGT | 1 cut(s) | 574 |
| HpyCH4V | TGCA | 9 cut(s) | 43, 209, 242, 265, 339, 629, 703, 797, 845 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 158, 167, 345, 380 |
| HpyF3I | CTNAG | 3 cut(s) | 457, 558, 666 |
| HpySE526I | ACGT | 1 cut(s) | 574 |
| Hsp92II | CATG | 6 cut(s) | 29, 43, 121, 242, 265, 599 |
| HspAI | GCGC | 1 cut(s) | 395 |
| Kpn2I | TCCGGA | 1 cut(s) | 466 |
| Kzo9I | GATC | 3 cut(s) | 88, 190, 673 |
| LmnI | GCTCC | 2 cut(s) | 418, 918 |
| Lsp1109I | GCAGC | 1 cut(s) | 55 |
| LweI | GCATC | 3 cut(s) | 117, 196, 846 |
| MabI | ACCWGGT | 1 cut(s) | 823 |
| MaeI | CTAG | 2 cut(s) | 564, 836 |
| MaeII | ACGT | 1 cut(s) | 574 |
| MalI | GATC | 3 cut(s) | 90, 192, 675 |
| MboI | GATC | 3 cut(s) | 88, 190, 673 |
| MboII | GAAGA | 4 cut(s) | 173, 250, 581, 911 |
| MflI | RGATCY | 1 cut(s) | 88 |
| MluCI | AATT | 9 cut(s) | 176, 219, 243, 278, 434, 704, 776, 788, 872 |
| MnlI | CCTC | 8 cut(s) | 79, 172, 295, 545, 721, 763, 841, 897 |
| Mph1103I | ATGCAT | 1 cut(s) | 631 |
| MroI | TCCGGA | 1 cut(s) | 466 |
| MroXI | GAANNNNTTC | 1 cut(s) | 254 |
| MslI | CAYNNNNRTG | 2 cut(s) | 116, 615 |
| MspI | CCGG | 2 cut(s) | 422, 467 |
| MspR9I | CCNGG | 2 cut(s) | 825, 885 |
| MvaI | CCWGG | 2 cut(s) | 825, 885 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 158, 167, 345, 380 |
| NdeI | CATATG | 2 cut(s) | 49, 130 |
| NdeII | GATC | 3 cut(s) | 88, 190, 673 |
| NlaIII | CATG | 6 cut(s) | 29, 43, 121, 242, 265, 599 |
| NlaIV | GGNNCC | 3 cut(s) | 451, 537, 955 |
| NsbI | TGCGCA | 1 cut(s) | 396 |
| NsiI | ATGCAT | 1 cut(s) | 631 |
| NspI | RCATGY | 1 cut(s) | 121 |
| NspV | TTCGAA | 1 cut(s) | 248 |
| PaqCI | CACCTGC | 1 cut(s) | 388 |
| PdmI | GAANNNNTTC | 1 cut(s) | 254 |
| PfeI | GAWTC | 2 cut(s) | 322, 439 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 53 |
| PkrI | GCNGC | 3 cut(s) | 45, 123, 427 |
| Ppu21I | YACGTR | 1 cut(s) | 575 |
| Psp6I | CCWGG | 2 cut(s) | 823, 883 |
| PspGI | CCWGG | 2 cut(s) | 823, 883 |
| PspN4I | GGNNCC | 3 cut(s) | 451, 537, 955 |
| PspPI | GGNCC | 4 cut(s) | 8, 449, 536, 678 |
| PstI | CTGCAG | 1 cut(s) | 847 |
| PstNI | CAGNNNCTG | 1 cut(s) | 345 |
| PsuI | RGATCY | 1 cut(s) | 88 |
| RsaI | GTAC | 1 cut(s) | 573 |
| RsaNI | GTAC | 1 cut(s) | 572 |
| RseI | CAYNNNNRTG | 2 cut(s) | 116, 615 |
| SatI | GCNGC | 3 cut(s) | 44, 122, 426 |
| Sau3AI | GATC | 3 cut(s) | 88, 190, 673 |
| Sau96I | GGNCC | 4 cut(s) | 8, 449, 536, 678 |
| ScrFI | CCNGG | 2 cut(s) | 825, 885 |
| SexAI | ACCWGGT | 1 cut(s) | 823 |
| SfaNI | GCATC | 3 cut(s) | 117, 196, 846 |
| SfcI | CTRYAG | 1 cut(s) | 843 |
| SfuI | TTCGAA | 1 cut(s) | 248 |
| SinI | GGWCC | 3 cut(s) | 8, 536, 678 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 116, 615 |
| SnaBI | TACGTA | 1 cut(s) | 575 |
| SpeI | ACTAGT | 1 cut(s) | 563 |
| Sse9I | AATT | 9 cut(s) | 176, 219, 243, 278, 434, 704, 776, 788, 872 |
| SsiI | CCGC | 4 cut(s) | 122, 170, 425, 659 |
| SspMI | CTAG | 2 cut(s) | 564, 836 |
| StyD4I | CCNGG | 2 cut(s) | 823, 883 |
| StyI | CCWWGG | 1 cut(s) | 502 |
| TaaI | ACNGT | 2 cut(s) | 12, 540 |
| TaiI | ACGT | 1 cut(s) | 577 |
| TaqI | TCGA | 1 cut(s) | 248 |
| TaqII | GACCGA | 1 cut(s) | 666 |
| TasI | AATT | 9 cut(s) | 176, 219, 243, 278, 434, 704, 776, 788, 872 |
| TauI | GCSGC | 2 cut(s) | 124, 428 |
| TfiI | GAWTC | 2 cut(s) | 322, 439 |
| TscAI | CASTG | 2 cut(s) | 118, 451 |
| TseI | GCWGC | 1 cut(s) | 43 |
| TspDTI | ATGAA | 3 cut(s) | 173, 250, 581 |
| TspGWI | ACGGA | 2 cut(s) | 98, 634 |
| TspRI | CASTG | 2 cut(s) | 118, 451 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 53 |
| VpaK11BI | GGWCC | 3 cut(s) | 8, 536, 678 |
| XapI | RAATTY | 4 cut(s) | 176, 278, 776, 788 |
| XceI | RCATGY | 1 cut(s) | 121 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 397 |
| XmnI | GAANNNNTTC | 1 cut(s) | 254 |
| XspI | CTAG | 2 cut(s) | 564, 836 |
| Zsp2I | ATGCAT | 1 cut(s) | 631 |