Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 814, 887 |
| Acc36I | ACCTGC | 3 cut(s) | 658, 814, 887 |
| AccIII | TCCGGA | 1 cut(s) | 111 |
| AciI | CCGC | 4 cut(s) | 122, 307, 401, 810 |
| AclWI | GGATC | 1 cut(s) | 198 |
| AcoI | YGGCCR | 1 cut(s) | 402 |
| AcsI | RAATTY | 2 cut(s) | 176, 836 |
| AfaI | GTAC | 2 cut(s) | 612, 681 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 587, 819, 847 |
| AflIII | ACRYGT | 1 cut(s) | 344 |
| AgeI | ACCGGT | 1 cut(s) | 847 |
| AgsI | TTSAA | 3 cut(s) | 22, 320, 520 |
| AluBI | AGCT | 4 cut(s) | 18, 389, 493, 596 |
| AluI | AGCT | 4 cut(s) | 18, 389, 493, 596 |
| Alw26I | GTCTC | 1 cut(s) | 593 |
| AlwI | GGATC | 1 cut(s) | 198 |
| Aor13HI | TCCGGA | 1 cut(s) | 111 |
| AoxI | GGCC | 5 cut(s) | 372, 402, 578, 716, 821 |
| ApeKI | GCWGC | 5 cut(s) | 40, 43, 389, 392, 476 |
| ApoI | RAATTY | 2 cut(s) | 176, 836 |
| AsiGI | ACCGGT | 1 cut(s) | 847 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 254, 515, 531 |
| AspS9I | GGNCC | 2 cut(s) | 304, 717 |
| AsuHPI | GGTGA | 3 cut(s) | 795, 837, 858 |
| AsuII | TTCGAA | 1 cut(s) | 248 |
| AvaII | GGWCC | 1 cut(s) | 304 |
| BauI | CACGAG | 2 cut(s) | 10, 237 |
| BbvI | GCAGC | 5 cut(s) | 27, 55, 376, 404, 488 |
| BccI | CCATC | 2 cut(s) | 359, 664 |
| BceAI | ACGGC | 1 cut(s) | 797 |
| BciVI | GTATCC | 1 cut(s) | 119 |
| BcoDI | GTCTC | 1 cut(s) | 593 |
| BfaI | CTAG | 3 cut(s) | 326, 677, 901 |
| BfmI | CTRYAG | 3 cut(s) | 41, 75, 390 |
| BfuAI | ACCTGC | 3 cut(s) | 658, 814, 887 |
| BfuI | GTATCC | 1 cut(s) | 119 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 473 |
| BisI | GCNGC | 8 cut(s) | 41, 44, 122, 390, 393, 402, 477, 810 |
| BlsI | GCNGC | 8 cut(s) | 42, 45, 123, 391, 394, 403, 478, 811 |
| Bme18I | GGWCC | 1 cut(s) | 304 |
| BmgT120I | GGNCC | 2 cut(s) | 304, 717 |
| BmsI | GCATC | 1 cut(s) | 196 |
| BpmI | CTGGAG | 1 cut(s) | 234 |
| Bpu14I | TTCGAA | 1 cut(s) | 248 |
| BsaBI | GATNNNNATC | 1 cut(s) | 189 |
| BsaWI | WCCGGW | 2 cut(s) | 111, 847 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 397, 427 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 587, 819, 847 |
| Bse118I | RCCGGY | 3 cut(s) | 124, 397, 847 |
| Bse1I | ACTGG | 4 cut(s) | 217, 426, 477, 768 |
| Bse3DI | GCAATG | 1 cut(s) | 147 |
| Bse8I | GATNNNNATC | 1 cut(s) | 189 |
| BseAI | TCCGGA | 1 cut(s) | 111 |
| BseGI | GGATG | 1 cut(s) | 529 |
| BseJI | GATNNNNATC | 1 cut(s) | 189 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 587, 819, 847 |
| BseMI | GCAATG | 1 cut(s) | 147 |
| BseMII | CTCAG | 1 cut(s) | 588 |
| BseNI | ACTGG | 4 cut(s) | 217, 426, 477, 768 |
| BseRI | GAGGAG | 1 cut(s) | 606 |
| BseXI | GCAGC | 5 cut(s) | 27, 55, 376, 404, 488 |
| BsgI | GTGCAG | 1 cut(s) | 657 |
| BshFI | GGCC | 5 cut(s) | 374, 404, 580, 718, 823 |
| BshTI | ACCGGT | 1 cut(s) | 847 |
| BsiSI | CCGG | 4 cut(s) | 112, 125, 398, 848 |
| BslFI | GGGAC | 1 cut(s) | 49 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 587, 819, 847 |
| BsmAI | GTCTC | 1 cut(s) | 593 |
| BsmFI | GGGAC | 1 cut(s) | 49 |
| BsnI | GGCC | 5 cut(s) | 374, 404, 580, 718, 823 |
| Bsp119I | TTCGAA | 1 cut(s) | 248 |
| Bsp13I | TCCGGA | 1 cut(s) | 111 |
| Bsp143I | GATC | 3 cut(s) | 184, 190, 863 |
| BspACI | CCGC | 4 cut(s) | 122, 307, 401, 810 |
| BspANI | GGCC | 5 cut(s) | 374, 404, 580, 718, 823 |
| BspCNI | CTCAG | 1 cut(s) | 589 |
| BspEI | TCCGGA | 1 cut(s) | 111 |
| BspHI | TCATGA | 1 cut(s) | 361 |
| BspMAI | CTGCAG | 2 cut(s) | 45, 394 |
| BspMI | ACCTGC | 3 cut(s) | 658, 814, 887 |
| BspPI | GGATC | 1 cut(s) | 198 |
| BspT104I | TTCGAA | 1 cut(s) | 248 |
| BsrDI | GCAATG | 1 cut(s) | 147 |
| BsrFI | RCCGGY | 3 cut(s) | 124, 397, 847 |
| BsrI | ACTGG | 4 cut(s) | 217, 426, 477, 768 |
| BssAI | RCCGGY | 3 cut(s) | 124, 397, 847 |
| BssMI | GATC | 3 cut(s) | 184, 190, 863 |
| BssSI | CACGAG | 2 cut(s) | 10, 237 |
| Bst2BI | CACGAG | 2 cut(s) | 10, 237 |
| BstBI | TTCGAA | 1 cut(s) | 248 |
| BstC8I | GCNNGC | 4 cut(s) | 126, 376, 481, 485 |
| BstDEI | CTNAG | 1 cut(s) | 597 |
| BstF5I | GGATG | 1 cut(s) | 529 |
| BstKTI | GATC | 3 cut(s) | 187, 193, 866 |
| BstMAI | GTCTC | 1 cut(s) | 593 |
| BstMBI | GATC | 3 cut(s) | 184, 190, 863 |
| BstNSI | RCATGY | 1 cut(s) | 348 |
| BstSFI | CTRYAG | 3 cut(s) | 41, 75, 390 |
| BstV1I | GCAGC | 5 cut(s) | 27, 55, 376, 404, 488 |
| BsuI | GTATCC | 1 cut(s) | 119 |
| BsuRI | GGCC | 5 cut(s) | 374, 404, 580, 718, 823 |
| BtsCI | GGATG | 1 cut(s) | 529 |
| BtsIMutI | CAGTG | 1 cut(s) | 419 |
| BveI | ACCTGC | 3 cut(s) | 658, 814, 887 |
| Cac8I | GCNNGC | 4 cut(s) | 126, 376, 481, 485 |
| CciI | TCATGA | 1 cut(s) | 361 |
| Cfr10I | RCCGGY | 3 cut(s) | 124, 397, 847 |
| Cfr13I | GGNCC | 2 cut(s) | 304, 717 |
| Csp6I | GTAC | 2 cut(s) | 611, 680 |
| CspAI | ACCGGT | 1 cut(s) | 847 |
| CviAII | CATG | 5 cut(s) | 50, 262, 345, 362, 438 |
| CviQI | GTAC | 2 cut(s) | 611, 680 |
| DdeI | CTNAG | 1 cut(s) | 597 |
| DpnI | GATC | 3 cut(s) | 186, 192, 865 |
| DpnII | GATC | 3 cut(s) | 184, 190, 863 |
| EaeI | YGGCCR | 1 cut(s) | 402 |
| Eco147I | AGGCCT | 2 cut(s) | 374, 580 |
| Eco47I | GGWCC | 1 cut(s) | 304 |
| EcoO109I | RGGNCCY | 1 cut(s) | 717 |
| FaeI | CATG | 5 cut(s) | 53, 265, 348, 365, 441 |
| FaqI | GGGAC | 1 cut(s) | 49 |
| FatI | CATG | 5 cut(s) | 49, 261, 344, 361, 437 |
| Fnu4HI | GCNGC | 8 cut(s) | 41, 44, 122, 390, 393, 402, 477, 810 |
| FokI | GGATG | 1 cut(s) | 536 |
| Fsp4HI | GCNGC | 8 cut(s) | 41, 44, 122, 390, 393, 402, 477, 810 |
| FspBI | CTAG | 3 cut(s) | 326, 677, 901 |
| GluI | GCNGC | 8 cut(s) | 41, 44, 122, 390, 393, 402, 477, 810 |
| GsuI | CTGGAG | 1 cut(s) | 234 |
| HaeIII | GGCC | 5 cut(s) | 374, 404, 580, 718, 823 |
| HapII | CCGG | 4 cut(s) | 112, 125, 398, 848 |
| Hin1II | CATG | 5 cut(s) | 53, 265, 348, 365, 441 |
| HinfI | GANTC | 1 cut(s) | 511 |
| HpaII | CCGG | 4 cut(s) | 112, 125, 398, 848 |
| HphI | GGTGA | 3 cut(s) | 795, 837, 858 |
| Hpy166II | GTNNAC | 1 cut(s) | 688 |
| Hpy188I | TCNGA | 3 cut(s) | 195, 863, 894 |
| Hpy188III | TCNNGA | 6 cut(s) | 112, 182, 188, 362, 506, 748 |
| Hpy8I | GTNNAC | 1 cut(s) | 688 |
| HpyAV | CCTTC | 5 cut(s) | 190, 570, 730, 735, 761 |
| HpyF3I | CTNAG | 1 cut(s) | 597 |
| Hsp92II | CATG | 5 cut(s) | 53, 265, 348, 365, 441 |
| Kpn2I | TCCGGA | 1 cut(s) | 111 |
| KroI | GCCGGC | 1 cut(s) | 124 |
| KroNI | GCCGGC | 1 cut(s) | 126 |
| Kzo9I | GATC | 3 cut(s) | 184, 190, 863 |
| LmnI | GCTCC | 3 cut(s) | 15, 418, 593 |
| Lsp1109I | GCAGC | 5 cut(s) | 27, 55, 376, 404, 488 |
| LweI | GCATC | 1 cut(s) | 196 |
| MaeI | CTAG | 3 cut(s) | 326, 677, 901 |
| MaeIII | GTNAC | 3 cut(s) | 738, 801, 843 |
| MalI | GATC | 3 cut(s) | 186, 192, 865 |
| MboI | GATC | 3 cut(s) | 184, 190, 863 |
| MboII | GAAGA | 1 cut(s) | 304 |
| MluCI | AATT | 7 cut(s) | 176, 243, 458, 515, 664, 743, 836 |
| MmeI | TCCRAC | 2 cut(s) | 435, 553 |
| MnlI | CCTC | 8 cut(s) | 132, 295, 364, 584, 591, 652, 702, 802 |
| MroI | TCCGGA | 1 cut(s) | 111 |
| MroNI | GCCGGC | 1 cut(s) | 124 |
| MroXI | GAANNNNTTC | 3 cut(s) | 254, 515, 531 |
| MseI | TTAA | 1 cut(s) | 818 |
| MspI | CCGG | 4 cut(s) | 112, 125, 398, 848 |
| NaeI | GCCGGC | 1 cut(s) | 126 |
| NdeII | GATC | 3 cut(s) | 184, 190, 863 |
| NgoMIV | GCCGGC | 1 cut(s) | 124 |
| NlaIII | CATG | 5 cut(s) | 53, 265, 348, 365, 441 |
| NmuCI | GTSAC | 2 cut(s) | 801, 843 |
| NspI | RCATGY | 1 cut(s) | 348 |
| NspV | TTCGAA | 1 cut(s) | 248 |
| PagI | TCATGA | 1 cut(s) | 361 |
| PaqCI | CACCTGC | 2 cut(s) | 814, 887 |
| PceI | AGGCCT | 2 cut(s) | 374, 580 |
| PciI | ACATGT | 1 cut(s) | 344 |
| PdiI | GCCGGC | 1 cut(s) | 126 |
| PdmI | GAANNNNTTC | 3 cut(s) | 254, 515, 531 |
| PfeI | GAWTC | 1 cut(s) | 511 |
| PinAI | ACCGGT | 1 cut(s) | 847 |
| PkrI | GCNGC | 8 cut(s) | 42, 45, 123, 391, 394, 403, 478, 811 |
| PscI | ACATGT | 1 cut(s) | 344 |
| PspPI | GGNCC | 2 cut(s) | 304, 717 |
| PstI | CTGCAG | 2 cut(s) | 45, 394 |
| RsaI | GTAC | 2 cut(s) | 612, 681 |
| RsaNI | GTAC | 2 cut(s) | 611, 680 |
| SaqAI | TTAA | 1 cut(s) | 818 |
| SatI | GCNGC | 8 cut(s) | 41, 44, 122, 390, 393, 402, 477, 810 |
| Sau3AI | GATC | 3 cut(s) | 184, 190, 863 |
| Sau96I | GGNCC | 2 cut(s) | 304, 717 |
| SfaNI | GCATC | 1 cut(s) | 196 |
| SfcI | CTRYAG | 3 cut(s) | 41, 75, 390 |
| SfuI | TTCGAA | 1 cut(s) | 248 |
| SgrAI | CRCCGGYG | 1 cut(s) | 397 |
| SinI | GGWCC | 1 cut(s) | 304 |
| Sse9I | AATT | 7 cut(s) | 176, 243, 458, 515, 664, 743, 836 |
| SseBI | AGGCCT | 2 cut(s) | 374, 580 |
| SsiI | CCGC | 4 cut(s) | 122, 307, 401, 810 |
| SspMI | CTAG | 3 cut(s) | 326, 677, 901 |
| StuI | AGGCCT | 2 cut(s) | 374, 580 |
| TaqI | TCGA | 2 cut(s) | 248, 668 |
| TasI | AATT | 7 cut(s) | 176, 243, 458, 515, 664, 743, 836 |
| TauI | GCSGC | 3 cut(s) | 124, 404, 812 |
| TfiI | GAWTC | 1 cut(s) | 511 |
| Tru1I | TTAA | 1 cut(s) | 818 |
| Tru9I | TTAA | 1 cut(s) | 818 |
| TscAI | CASTG | 1 cut(s) | 426 |
| TseFI | GTSAC | 2 cut(s) | 801, 843 |
| TseI | GCWGC | 5 cut(s) | 40, 43, 389, 392, 476 |
| Tsp45I | GTSAC | 2 cut(s) | 801, 843 |
| TspDTI | ATGAA | 4 cut(s) | 98, 426, 540, 620 |
| TspRI | CASTG | 1 cut(s) | 426 |
| VpaK11BI | GGWCC | 1 cut(s) | 304 |
| XapI | RAATTY | 2 cut(s) | 176, 836 |
| XceI | RCATGY | 1 cut(s) | 348 |
| XmnI | GAANNNNTTC | 3 cut(s) | 254, 515, 531 |
| XspI | CTAG | 3 cut(s) | 326, 677, 901 |