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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 562 |
| AccB1I | GGYRCC | 1 cut(s) | 562 |
| AccII | CGCG | 1 cut(s) | 492 |
| AciI | CCGC | 3 cut(s) | 36, 161, 299 |
| AclWI | GGATC | 5 cut(s) | 87, 100, 115, 171, 211 |
| AcsI | RAATTY | 2 cut(s) | 713, 942 |
| AcuI | CTGAAG | 1 cut(s) | 897 |
| AcyI | GRCGYC | 1 cut(s) | 578 |
| AfaI | GTAC | 4 cut(s) | 234, 538, 564, 778 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 13, 102, 559 |
| AgsI | TTSAA | 4 cut(s) | 182, 211, 592, 743 |
| AhlI | ACTAGT | 1 cut(s) | 539 |
| AjnI | CCWGG | 1 cut(s) | 309 |
| AluBI | AGCT | 8 cut(s) | 26, 128, 257, 515, 557, 640, 688, 910 |
| AluI | AGCT | 8 cut(s) | 26, 128, 257, 515, 557, 640, 688, 910 |
| AlwI | GGATC | 5 cut(s) | 87, 100, 115, 171, 211 |
| AoxI | GGCC | 4 cut(s) | 3, 476, 602, 824 |
| ApeKI | GCWGC | 2 cut(s) | 287, 515 |
| ApoI | RAATTY | 2 cut(s) | 713, 942 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 428, 460 |
| Asp718I | GGTACC | 1 cut(s) | 562 |
| AspLEI | GCGC | 1 cut(s) | 597 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuC2I | CCSGG | 2 cut(s) | 417, 698 |
| AsuHPI | GGTGA | 4 cut(s) | 71, 473, 586, 662 |
| AsuII | TTCGAA | 1 cut(s) | 447 |
| AsuNHI | GCTAGC | 1 cut(s) | 124 |
| BamHI | GGATCC | 1 cut(s) | 92 |
| BanI | GGYRCC | 1 cut(s) | 562 |
| BbvI | GCAGC | 2 cut(s) | 274, 502 |
| BccI | CCATC | 3 cut(s) | 17, 194, 284 |
| BceAI | ACGGC | 1 cut(s) | 114 |
| BciT130I | CCWGG | 1 cut(s) | 311 |
| BcnI | CCSGG | 2 cut(s) | 417, 698 |
| BcuI | ACTAGT | 1 cut(s) | 539 |
| BfaI | CTAG | 8 cut(s) | 125, 471, 498, 540, 554, 749, 903, 921 |
| BfmI | CTRYAG | 1 cut(s) | 480 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 296 |
| BisI | GCNGC | 3 cut(s) | 36, 288, 516 |
| BlsI | GCNGC | 3 cut(s) | 37, 289, 517 |
| Bme1390I | CCNGG | 3 cut(s) | 311, 417, 698 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmiI | GGNNCC | 3 cut(s) | 6, 94, 564 |
| BmrFI | CCNGG | 3 cut(s) | 311, 417, 698 |
| BmrI | ACTGGG | 1 cut(s) | 681 |
| BmsI | GCATC | 4 cut(s) | 47, 484, 538, 665 |
| BmtI | GCTAGC | 1 cut(s) | 128 |
| BmuI | ACTGGG | 1 cut(s) | 681 |
| Bpu14I | TTCGAA | 1 cut(s) | 447 |
| BpuEI | CTTGAG | 1 cut(s) | 620 |
| BpuMI | CCSGG | 2 cut(s) | 417, 698 |
| BsaHI | GRCGYC | 1 cut(s) | 578 |
| BsaJI | CCNNGG | 1 cut(s) | 96 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 13, 102, 559 |
| Bse1I | ACTGG | 1 cut(s) | 676 |
| BseBI | CCWGG | 1 cut(s) | 311 |
| BseDI | CCNNGG | 1 cut(s) | 96 |
| BseGI | GGATG | 4 cut(s) | 22, 205, 246, 553 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 13, 102, 559 |
| BseMII | CTCAG | 3 cut(s) | 125, 420, 878 |
| BseNI | ACTGG | 1 cut(s) | 676 |
| BseRI | GAGGAG | 1 cut(s) | 610 |
| BseXI | GCAGC | 2 cut(s) | 274, 502 |
| BseYI | CCCAGC | 1 cut(s) | 53 |
| Bsh1236I | CGCG | 1 cut(s) | 492 |
| BshFI | GGCC | 4 cut(s) | 5, 478, 604, 826 |
| BshNI | GGYRCC | 1 cut(s) | 562 |
| BsiSI | CCGG | 2 cut(s) | 417, 698 |
| BslFI | GGGAC | 1 cut(s) | 680 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 13, 102, 559 |
| BsmFI | GGGAC | 1 cut(s) | 680 |
| BsmI | GAATGC | 1 cut(s) | 289 |
| BsnI | GGCC | 4 cut(s) | 5, 478, 604, 826 |
| Bsp119I | TTCGAA | 1 cut(s) | 447 |
| Bsp143I | GATC | 8 cut(s) | 70, 92, 107, 163, 203, 319, 456, 894 |
| Bsp68I | TCGCGA | 1 cut(s) | 492 |
| BspACI | CCGC | 3 cut(s) | 36, 161, 299 |
| BspANI | GGCC | 4 cut(s) | 5, 478, 604, 826 |
| BspCNI | CTCAG | 3 cut(s) | 124, 421, 879 |
| BspFNI | CGCG | 1 cut(s) | 492 |
| BspHI | TCATGA | 1 cut(s) | 279 |
| BspLI | GGNNCC | 3 cut(s) | 6, 94, 564 |
| BspOI | GCTAGC | 1 cut(s) | 128 |
| BspPI | GGATC | 5 cut(s) | 87, 100, 115, 171, 211 |
| BspQI | GCTCTTC | 1 cut(s) | 258 |
| BspT104I | TTCGAA | 1 cut(s) | 447 |
| BspT107I | GGYRCC | 1 cut(s) | 562 |
| BsrI | ACTGG | 1 cut(s) | 676 |
| BssECI | CCNNGG | 1 cut(s) | 96 |
| BssMI | GATC | 8 cut(s) | 70, 92, 107, 163, 203, 319, 456, 894 |
| BssNI | GRCGYC | 1 cut(s) | 578 |
| Bst2UI | CCWGG | 1 cut(s) | 311 |
| Bst4CI | ACNGT | 1 cut(s) | 158 |
| Bst6I | CTCTTC | 1 cut(s) | 258 |
| BstACI | GRCGYC | 1 cut(s) | 578 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 44 |
| BstBI | TTCGAA | 1 cut(s) | 447 |
| BstC8I | GCNNGC | 4 cut(s) | 45, 126, 151, 908 |
| BstDEI | CTNAG | 5 cut(s) | 111, 429, 731, 861, 887 |
| BstDSI | CCRYGG | 1 cut(s) | 96 |
| BstF5I | GGATG | 4 cut(s) | 22, 205, 246, 553 |
| BstFNI | CGCG | 1 cut(s) | 492 |
| BstHHI | GCGC | 1 cut(s) | 597 |
| BstKTI | GATC | 8 cut(s) | 73, 95, 110, 166, 206, 322, 459, 897 |
| BstMBI | GATC | 8 cut(s) | 70, 92, 107, 163, 203, 319, 456, 894 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 32, 44, 296, 601 |
| BstNI | CCWGG | 1 cut(s) | 311 |
| BstNSI | RCATGY | 1 cut(s) | 153 |
| BstSCI | CCNGG | 3 cut(s) | 309, 415, 696 |
| BstSFI | CTRYAG | 1 cut(s) | 480 |
| BstUI | CGCG | 1 cut(s) | 492 |
| BstV1I | GCAGC | 2 cut(s) | 274, 502 |
| BstX2I | RGATCY | 3 cut(s) | 92, 107, 163 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 86 |
| BstYI | RGATCY | 3 cut(s) | 92, 107, 163 |
| BsuRI | GGCC | 4 cut(s) | 5, 478, 604, 826 |
| BtgI | CCRYGG | 1 cut(s) | 96 |
| BtgZI | GCGATG | 2 cut(s) | 24, 507 |
| BtsCI | GGATG | 4 cut(s) | 22, 205, 246, 553 |
| BtsI | GCAGTG | 1 cut(s) | 797 |
| BtsIMutI | CAGTG | 2 cut(s) | 163, 797 |
| BtuMI | TCGCGA | 1 cut(s) | 492 |
| Cac8I | GCNNGC | 4 cut(s) | 45, 126, 151, 908 |
| CciI | TCATGA | 1 cut(s) | 279 |
| CfoI | GCGC | 1 cut(s) | 597 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| CseI | GACGC | 1 cut(s) | 586 |
| Csp6I | GTAC | 4 cut(s) | 233, 537, 563, 777 |
| CviAII | CATG | 3 cut(s) | 82, 150, 280 |
| CviQI | GTAC | 4 cut(s) | 233, 537, 563, 777 |
| DdeI | CTNAG | 5 cut(s) | 111, 429, 731, 861, 887 |
| DpnI | GATC | 8 cut(s) | 72, 94, 109, 165, 205, 321, 458, 896 |
| DpnII | GATC | 8 cut(s) | 70, 92, 107, 163, 203, 319, 456, 894 |
| Eam1104I | CTCTTC | 1 cut(s) | 258 |
| EarI | CTCTTC | 1 cut(s) | 258 |
| Eco147I | AGGCCT | 2 cut(s) | 478, 826 |
| Eco57I | CTGAAG | 1 cut(s) | 897 |
| EcoRII | CCWGG | 1 cut(s) | 309 |
| FaeI | CATG | 3 cut(s) | 85, 153, 283 |
| FaqI | GGGAC | 1 cut(s) | 680 |
| FatI | CATG | 3 cut(s) | 81, 149, 279 |
| FauI | CCCGC | 1 cut(s) | 292 |
| Fnu4HI | GCNGC | 3 cut(s) | 36, 288, 516 |
| FokI | GGATG | 4 cut(s) | 29, 212, 233, 560 |
| Fsp4HI | GCNGC | 3 cut(s) | 36, 288, 516 |
| FspBI | CTAG | 8 cut(s) | 125, 471, 498, 540, 554, 749, 903, 921 |
| GlaI | GCGC | 1 cut(s) | 596 |
| GluI | GCNGC | 3 cut(s) | 36, 288, 516 |
| GsaI | CCCAGC | 1 cut(s) | 57 |
| HaeIII | GGCC | 4 cut(s) | 5, 478, 604, 826 |
| HapII | CCGG | 2 cut(s) | 417, 698 |
| HgaI | GACGC | 1 cut(s) | 586 |
| HhaI | GCGC | 1 cut(s) | 597 |
| Hin1I | GRCGYC | 1 cut(s) | 578 |
| Hin1II | CATG | 3 cut(s) | 85, 153, 283 |
| Hin6I | GCGC | 1 cut(s) | 595 |
| HinP1I | GCGC | 1 cut(s) | 595 |
| HindIII | AAGCTT | 2 cut(s) | 638, 908 |
| HinfI | GANTC | 4 cut(s) | 400, 676, 743, 794 |
| HpaII | CCGG | 2 cut(s) | 417, 698 |
| HphI | GGTGA | 4 cut(s) | 71, 473, 586, 662 |
| Hpy166II | GTNNAC | 1 cut(s) | 235 |
| Hpy188I | TCNGA | 2 cut(s) | 405, 661 |
| Hpy188III | TCNNGA | 4 cut(s) | 280, 391, 471, 491 |
| Hpy8I | GTNNAC | 1 cut(s) | 235 |
| HpyAV | CCTTC | 6 cut(s) | 468, 618, 625, 767, 781, 859 |
| HpyCH4III | ACNGT | 1 cut(s) | 158 |
| HpyCH4IV | ACGT | 1 cut(s) | 184 |
| HpyCH4V | TGCA | 2 cut(s) | 153, 518 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 32, 44, 296, 601 |
| HpyF3I | CTNAG | 5 cut(s) | 111, 429, 731, 861, 887 |
| HpySE526I | ACGT | 1 cut(s) | 184 |
| Hsp92I | GRCGYC | 1 cut(s) | 578 |
| Hsp92II | CATG | 3 cut(s) | 85, 153, 283 |
| HspAI | GCGC | 1 cut(s) | 595 |
| KpnI | GGTACC | 1 cut(s) | 566 |
| Kzo9I | GATC | 8 cut(s) | 70, 92, 107, 163, 203, 319, 456, 894 |
| LguI | GCTCTTC | 1 cut(s) | 258 |
| LmnI | GCTCC | 1 cut(s) | 418 |
| Lsp1109I | GCAGC | 2 cut(s) | 274, 502 |
| LweI | GCATC | 4 cut(s) | 47, 484, 538, 665 |
| MaeI | CTAG | 8 cut(s) | 125, 471, 498, 540, 554, 749, 903, 921 |
| MaeII | ACGT | 1 cut(s) | 184 |
| MaeIII | GTNAC | 3 cut(s) | 19, 574, 763 |
| MalI | GATC | 8 cut(s) | 72, 94, 109, 165, 205, 321, 458, 896 |
| MboI | GATC | 8 cut(s) | 70, 92, 107, 163, 203, 319, 456, 894 |
| MboII | GAAGA | 6 cut(s) | 275, 406, 433, 436, 826, 890 |
| MflI | RGATCY | 3 cut(s) | 92, 107, 163 |
| MluCI | AATT | 2 cut(s) | 713, 942 |
| MlyI | GAGTC | 1 cut(s) | 394 |
| MnlI | CCTC | 8 cut(s) | 7, 135, 230, 301, 526, 631, 746, 784 |
| MseI | TTAA | 3 cut(s) | 333, 570, 927 |
| MspI | CCGG | 2 cut(s) | 417, 698 |
| MspR9I | CCNGG | 3 cut(s) | 311, 417, 698 |
| Mva1269I | GAATGC | 1 cut(s) | 289 |
| MvaI | CCWGG | 1 cut(s) | 311 |
| MvnI | CGCG | 1 cut(s) | 492 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 32, 44, 296, 601 |
| NciI | CCSGG | 2 cut(s) | 417, 698 |
| NdeII | GATC | 8 cut(s) | 70, 92, 107, 163, 203, 319, 456, 894 |
| NheI | GCTAGC | 1 cut(s) | 124 |
| NlaIII | CATG | 3 cut(s) | 85, 153, 283 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 94, 564 |
| NmuCI | GTSAC | 2 cut(s) | 19, 574 |
| NruI | TCGCGA | 1 cut(s) | 492 |
| NspI | RCATGY | 1 cut(s) | 153 |
| NspV | TTCGAA | 1 cut(s) | 447 |
| PaeI | GCATGC | 1 cut(s) | 153 |
| PagI | TCATGA | 1 cut(s) | 279 |
| PceI | AGGCCT | 2 cut(s) | 478, 826 |
| PciSI | GCTCTTC | 1 cut(s) | 258 |
| PctI | GAATGC | 1 cut(s) | 289 |
| PfeI | GAWTC | 3 cut(s) | 676, 743, 794 |
| PfoI | TCCNGGA | 2 cut(s) | 415, 696 |
| PkrI | GCNGC | 3 cut(s) | 37, 289, 517 |
| PleI | GAGTC | 1 cut(s) | 394 |
| PpsI | GAGTC | 1 cut(s) | 394 |
| Psp6I | CCWGG | 1 cut(s) | 309 |
| PspFI | CCCAGC | 1 cut(s) | 53 |
| PspGI | CCWGG | 1 cut(s) | 309 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 94, 564 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 520, 552 |
| PsuI | RGATCY | 3 cut(s) | 92, 107, 163 |
| RruI | TCGCGA | 1 cut(s) | 492 |
| RsaI | GTAC | 4 cut(s) | 234, 538, 564, 778 |
| RsaNI | GTAC | 4 cut(s) | 233, 537, 563, 777 |
| SapI | GCTCTTC | 1 cut(s) | 258 |
| SaqAI | TTAA | 3 cut(s) | 333, 570, 927 |
| SatI | GCNGC | 3 cut(s) | 36, 288, 516 |
| Sau3AI | GATC | 8 cut(s) | 70, 92, 107, 163, 203, 319, 456, 894 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| SchI | GAGTC | 1 cut(s) | 394 |
| ScrFI | CCNGG | 3 cut(s) | 311, 417, 698 |
| SfaNI | GCATC | 4 cut(s) | 47, 484, 538, 665 |
| SfcI | CTRYAG | 1 cut(s) | 480 |
| SfuI | TTCGAA | 1 cut(s) | 447 |
| SmlI | CTYRAG | 1 cut(s) | 635 |
| SmoI | CTYRAG | 1 cut(s) | 635 |
| SpeI | ACTAGT | 1 cut(s) | 539 |
| SphI | GCATGC | 1 cut(s) | 153 |
| Sse9I | AATT | 2 cut(s) | 713, 942 |
| SseBI | AGGCCT | 2 cut(s) | 478, 826 |
| SsiI | CCGC | 3 cut(s) | 36, 161, 299 |
| SspMI | CTAG | 8 cut(s) | 125, 471, 498, 540, 554, 749, 903, 921 |
| StuI | AGGCCT | 2 cut(s) | 478, 826 |
| StyD4I | CCNGG | 3 cut(s) | 309, 415, 696 |
| TaaI | ACNGT | 1 cut(s) | 158 |
| TaiI | ACGT | 1 cut(s) | 187 |
| TaqI | TCGA | 4 cut(s) | 12, 447, 526, 836 |
| TasI | AATT | 2 cut(s) | 713, 942 |
| TauI | GCSGC | 1 cut(s) | 38 |
| TfiI | GAWTC | 3 cut(s) | 676, 743, 794 |
| Tru1I | TTAA | 3 cut(s) | 333, 570, 927 |
| Tru9I | TTAA | 3 cut(s) | 333, 570, 927 |
| TscAI | CASTG | 2 cut(s) | 163, 804 |
| TseFI | GTSAC | 2 cut(s) | 19, 574 |
| TseI | GCWGC | 2 cut(s) | 287, 515 |
| Tsp45I | GTSAC | 2 cut(s) | 19, 574 |
| TspDTI | ATGAA | 1 cut(s) | 296 |
| TspGWI | ACGGA | 1 cut(s) | 545 |
| TspRI | CASTG | 2 cut(s) | 163, 804 |
| XapI | RAATTY | 2 cut(s) | 713, 942 |
| XbaI | TCTAGA | 1 cut(s) | 470 |
| XceI | RCATGY | 1 cut(s) | 153 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 86 |
| XspI | CTAG | 8 cut(s) | 125, 471, 498, 540, 554, 749, 903, 921 |