ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF4283 | PF14111 | 40 - 108 | 3.8e-10 | Domain of unknown function (DUF4283) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 380 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 234 |
| Acc36I | ACCTGC | 1 cut(s) | 380 |
| AccB1I | GGYRCC | 1 cut(s) | 313 |
| AciI | CCGC | 2 cut(s) | 27, 103 |
| AclWI | GGATC | 1 cut(s) | 932 |
| AcoI | YGGCCR | 1 cut(s) | 54 |
| AcsI | RAATTY | 3 cut(s) | 189, 209, 424 |
| AcuI | CTGAAG | 1 cut(s) | 719 |
| AfaI | GTAC | 1 cut(s) | 492 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 52 |
| AflII | CTTAAG | 1 cut(s) | 494 |
| AflIII | ACRYGT | 1 cut(s) | 403 |
| AgeI | ACCGGT | 1 cut(s) | 826 |
| AgsI | TTSAA | 7 cut(s) | 221, 371, 429, 485, 653, 756, 821 |
| AhlI | ACTAGT | 1 cut(s) | 658 |
| AluBI | AGCT | 6 cut(s) | 499, 564, 760, 836, 904, 944 |
| AluI | AGCT | 6 cut(s) | 499, 564, 760, 836, 904, 944 |
| Alw26I | GTCTC | 3 cut(s) | 82, 220, 347 |
| AlwI | GGATC | 1 cut(s) | 932 |
| AoxI | GGCC | 2 cut(s) | 54, 292 |
| ApeKI | GCWGC | 5 cut(s) | 564, 760, 799, 904, 907 |
| ApoI | RAATTY | 3 cut(s) | 189, 209, 424 |
| AseI | ATTAAT | 1 cut(s) | 572 |
| AsiGI | ACCGGT | 1 cut(s) | 826 |
| AspLEI | GCGC | 1 cut(s) | 198 |
| AspS9I | GGNCC | 2 cut(s) | 67, 293 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 404 |
| AsuNHI | GCTAGC | 2 cut(s) | 560, 832 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BaeGI | GKGCMC | 1 cut(s) | 316 |
| BanI | GGYRCC | 1 cut(s) | 313 |
| BbvI | GCAGC | 5 cut(s) | 551, 747, 786, 891, 894 |
| BccI | CCATC | 3 cut(s) | 197, 581, 588 |
| BceAI | ACGGC | 1 cut(s) | 90 |
| BcoDI | GTCTC | 3 cut(s) | 82, 220, 347 |
| BcuI | ACTAGT | 1 cut(s) | 658 |
| BfaI | CTAG | 5 cut(s) | 345, 561, 584, 659, 833 |
| BfmI | CTRYAG | 1 cut(s) | 618 |
| BfrI | CTTAAG | 1 cut(s) | 494 |
| BfuAI | ACCTGC | 1 cut(s) | 380 |
| BisI | GCNGC | 5 cut(s) | 565, 761, 800, 905, 908 |
| BlsI | GCNGC | 5 cut(s) | 566, 762, 801, 906, 909 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 293 |
| BmiI | GGNNCC | 5 cut(s) | 94, 315, 712, 808, 954 |
| BmtI | GCTAGC | 2 cut(s) | 564, 836 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 84, 116 |
| BpuEI | CTTGAG | 2 cut(s) | 216, 350 |
| BsaBI | GATNNNNATC | 2 cut(s) | 273, 414 |
| BsaI | GGTCTC | 1 cut(s) | 220 |
| BsaJI | CCNNGG | 1 cut(s) | 296 |
| BsaWI | WCCGGW | 1 cut(s) | 826 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 52 |
| Bse118I | RCCGGY | 2 cut(s) | 56, 826 |
| Bse1I | ACTGG | 4 cut(s) | 30, 57, 359, 863 |
| Bse8I | GATNNNNATC | 2 cut(s) | 273, 414 |
| BseDI | CCNNGG | 1 cut(s) | 296 |
| BseJI | GATNNNNATC | 2 cut(s) | 273, 414 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BseMII | CTCAG | 1 cut(s) | 647 |
| BseNI | ACTGG | 4 cut(s) | 30, 57, 359, 863 |
| BseSI | GKGCMC | 1 cut(s) | 316 |
| BseXI | GCAGC | 5 cut(s) | 551, 747, 786, 891, 894 |
| BsgI | GTGCAG | 1 cut(s) | 644 |
| Bsh1285I | CGRYCG | 1 cut(s) | 89 |
| BshFI | GGCC | 2 cut(s) | 56, 294 |
| BshNI | GGYRCC | 1 cut(s) | 313 |
| BshTI | ACCGGT | 1 cut(s) | 826 |
| BsiEI | CGRYCG | 1 cut(s) | 89 |
| BsiSI | CCGG | 2 cut(s) | 57, 827 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BsmAI | GTCTC | 3 cut(s) | 82, 220, 347 |
| BsnI | GGCC | 2 cut(s) | 56, 294 |
| Bso31I | GGTCTC | 1 cut(s) | 220 |
| Bsp1286I | GDGCHC | 1 cut(s) | 316 |
| Bsp143I | GATC | 5 cut(s) | 86, 268, 409, 896, 937 |
| Bsp19I | CCATGG | 1 cut(s) | 296 |
| BspACI | CCGC | 2 cut(s) | 27, 103 |
| BspANI | GGCC | 2 cut(s) | 56, 294 |
| BspCNI | CTCAG | 1 cut(s) | 646 |
| BspLI | GGNNCC | 5 cut(s) | 94, 315, 712, 808, 954 |
| BspMI | ACCTGC | 1 cut(s) | 380 |
| BspOI | GCTAGC | 2 cut(s) | 564, 836 |
| BspPI | GGATC | 1 cut(s) | 932 |
| BspT107I | GGYRCC | 1 cut(s) | 313 |
| BspTI | CTTAAG | 1 cut(s) | 494 |
| BspTNI | GGTCTC | 1 cut(s) | 220 |
| BsrFI | RCCGGY | 2 cut(s) | 56, 826 |
| BsrI | ACTGG | 4 cut(s) | 30, 57, 359, 863 |
| BssAI | RCCGGY | 2 cut(s) | 56, 826 |
| BssECI | CCNNGG | 1 cut(s) | 296 |
| BssMI | GATC | 5 cut(s) | 86, 268, 409, 896, 937 |
| BssT1I | CCWWGG | 1 cut(s) | 296 |
| Bst4CI | ACNGT | 2 cut(s) | 622, 922 |
| Bst6I | CTCTTC | 1 cut(s) | 257 |
| BstAFI | CTTAAG | 1 cut(s) | 494 |
| BstC8I | GCNNGC | 5 cut(s) | 58, 117, 501, 562, 834 |
| BstDEI | CTNAG | 1 cut(s) | 633 |
| BstDSI | CCRYGG | 1 cut(s) | 296 |
| BstHHI | GCGC | 1 cut(s) | 198 |
| BstKTI | GATC | 5 cut(s) | 89, 271, 412, 899, 940 |
| BstMAI | GTCTC | 3 cut(s) | 82, 220, 347 |
| BstMBI | GATC | 5 cut(s) | 86, 268, 409, 896, 937 |
| BstMCI | CGRYCG | 1 cut(s) | 89 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 35, 739, 748, 757 |
| BstNSI | RCATGY | 1 cut(s) | 407 |
| BstSFI | CTRYAG | 1 cut(s) | 618 |
| BstSLI | GKGCMC | 1 cut(s) | 316 |
| BstV1I | GCAGC | 5 cut(s) | 551, 747, 786, 891, 894 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 587 |
| BsuRI | GGCC | 2 cut(s) | 56, 294 |
| BtgI | CCRYGG | 1 cut(s) | 296 |
| BtgZI | GCGATG | 1 cut(s) | 75 |
| BtsIMutI | CAGTG | 4 cut(s) | 50, 198, 366, 627 |
| BveI | ACCTGC | 1 cut(s) | 380 |
| Cac8I | GCNNGC | 5 cut(s) | 58, 117, 501, 562, 834 |
| CfoI | GCGC | 1 cut(s) | 198 |
| Cfr10I | RCCGGY | 2 cut(s) | 56, 826 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 293 |
| Csp6I | GTAC | 1 cut(s) | 491 |
| CspAI | ACCGGT | 1 cut(s) | 826 |
| CviAII | CATG | 5 cut(s) | 297, 404, 458, 715, 887 |
| CviQI | GTAC | 1 cut(s) | 491 |
| DdeI | CTNAG | 1 cut(s) | 633 |
| DpnI | GATC | 5 cut(s) | 88, 270, 411, 898, 939 |
| DpnII | GATC | 5 cut(s) | 86, 268, 409, 896, 937 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 234 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 234 |
| EaeI | YGGCCR | 1 cut(s) | 54 |
| Eam1104I | CTCTTC | 1 cut(s) | 257 |
| EarI | CTCTTC | 1 cut(s) | 257 |
| EciI | GGCGGA | 1 cut(s) | 92 |
| Eco130I | CCWWGG | 1 cut(s) | 296 |
| Eco31I | GGTCTC | 1 cut(s) | 220 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 1 cut(s) | 719 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoRI | GAATTC | 1 cut(s) | 424 |
| EcoT14I | CCWWGG | 1 cut(s) | 296 |
| ErhI | CCWWGG | 1 cut(s) | 296 |
| FaeI | CATG | 5 cut(s) | 300, 407, 461, 718, 890 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 108, 140 |
| FatI | CATG | 5 cut(s) | 296, 403, 457, 714, 886 |
| Fnu4HI | GCNGC | 5 cut(s) | 565, 761, 800, 905, 908 |
| Fsp4HI | GCNGC | 5 cut(s) | 565, 761, 800, 905, 908 |
| FspBI | CTAG | 5 cut(s) | 345, 561, 584, 659, 833 |
| GlaI | GCGC | 1 cut(s) | 197 |
| GluI | GCNGC | 5 cut(s) | 565, 761, 800, 905, 908 |
| HaeIII | GGCC | 2 cut(s) | 56, 294 |
| HapII | CCGG | 2 cut(s) | 57, 827 |
| HhaI | GCGC | 1 cut(s) | 198 |
| Hin1II | CATG | 5 cut(s) | 300, 407, 461, 718, 890 |
| Hin6I | GCGC | 1 cut(s) | 196 |
| HinP1I | GCGC | 1 cut(s) | 196 |
| HincII | GTYRAC | 1 cut(s) | 157 |
| HindII | GTYRAC | 1 cut(s) | 157 |
| HindIII | AAGCTT | 1 cut(s) | 497 |
| HinfI | GANTC | 5 cut(s) | 142, 415, 541, 629, 643 |
| HpaI | GTTAAC | 1 cut(s) | 157 |
| HpaII | CCGG | 2 cut(s) | 57, 827 |
| HphI | GGTGA | 2 cut(s) | 16, 404 |
| Hpy166II | GTNNAC | 3 cut(s) | 157, 705, 776 |
| Hpy188I | TCNGA | 7 cut(s) | 141, 147, 414, 423, 465, 636, 901 |
| Hpy188III | TCNNGA | 4 cut(s) | 90, 517, 584, 790 |
| Hpy8I | GTNNAC | 3 cut(s) | 157, 705, 776 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 87 |
| HpyAV | CCTTC | 3 cut(s) | 262, 729, 762 |
| HpyCH4III | ACNGT | 2 cut(s) | 622, 922 |
| HpyCH4V | TGCA | 8 cut(s) | 50, 164, 172, 389, 567, 625, 949, 993 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 35, 739, 748, 757 |
| HpyF3I | CTNAG | 1 cut(s) | 633 |
| Hsp92II | CATG | 5 cut(s) | 300, 407, 461, 718, 890 |
| HspAI | GCGC | 1 cut(s) | 196 |
| KroI | GCCGGC | 1 cut(s) | 56 |
| KroNI | GCCGGC | 1 cut(s) | 58 |
| KspAI | GTTAAC | 1 cut(s) | 157 |
| Kzo9I | GATC | 5 cut(s) | 86, 268, 409, 896, 937 |
| LmnI | GCTCC | 2 cut(s) | 92, 710 |
| Lsp1109I | GCAGC | 5 cut(s) | 551, 747, 786, 891, 894 |
| MaeI | CTAG | 5 cut(s) | 345, 561, 584, 659, 833 |
| MaeIII | GTNAC | 3 cut(s) | 22, 107, 376 |
| MalI | GATC | 5 cut(s) | 88, 270, 411, 898, 939 |
| MboI | GATC | 5 cut(s) | 86, 268, 409, 896, 937 |
| MboII | GAAGA | 5 cut(s) | 274, 299, 383, 410, 613 |
| MfeI | CAATTG | 2 cut(s) | 780, 933 |
| MhlI | GDGCHC | 1 cut(s) | 316 |
| MlyI | GAGTC | 1 cut(s) | 136 |
| MmeI | TCCRAC | 1 cut(s) | 862 |
| MnlI | CCTC | 6 cut(s) | 58, 147, 240, 284, 351, 430 |
| MroNI | GCCGGC | 1 cut(s) | 56 |
| MseI | TTAA | 5 cut(s) | 156, 213, 495, 572, 767 |
| MslI | CAYNNNNRTG | 1 cut(s) | 585 |
| MspCI | CTTAAG | 1 cut(s) | 494 |
| MspI | CCGG | 2 cut(s) | 57, 827 |
| MunI | CAATTG | 2 cut(s) | 780, 933 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 35, 739, 748, 757 |
| NaeI | GCCGGC | 1 cut(s) | 58 |
| NcoI | CCATGG | 1 cut(s) | 296 |
| NdeII | GATC | 5 cut(s) | 86, 268, 409, 896, 937 |
| NgoMIV | GCCGGC | 1 cut(s) | 56 |
| NheI | GCTAGC | 2 cut(s) | 560, 832 |
| NlaIII | CATG | 5 cut(s) | 300, 407, 461, 718, 890 |
| NlaIV | GGNNCC | 5 cut(s) | 94, 315, 712, 808, 954 |
| NmuCI | GTSAC | 1 cut(s) | 22 |
| NspI | RCATGY | 1 cut(s) | 407 |
| PaqCI | CACCTGC | 1 cut(s) | 380 |
| PciI | ACATGT | 1 cut(s) | 403 |
| PdiI | GCCGGC | 1 cut(s) | 58 |
| PfeI | GAWTC | 4 cut(s) | 415, 541, 629, 643 |
| PflFI | GACNNNGTC | 1 cut(s) | 20 |
| PinAI | ACCGGT | 1 cut(s) | 826 |
| PkrI | GCNGC | 5 cut(s) | 566, 762, 801, 906, 909 |
| Ple19I | CGATCG | 1 cut(s) | 89 |
| PleI | GAGTC | 1 cut(s) | 136 |
| PpsI | GAGTC | 1 cut(s) | 136 |
| PpuMI | RGGWCCY | 1 cut(s) | 67 |
| PscI | ACATGT | 1 cut(s) | 403 |
| PshBI | ATTAAT | 1 cut(s) | 572 |
| Psp5II | RGGWCCY | 1 cut(s) | 67 |
| PspN4I | GGNNCC | 5 cut(s) | 94, 315, 712, 808, 954 |
| PspPI | GGNCC | 2 cut(s) | 67, 293 |
| PspPPI | RGGWCCY | 1 cut(s) | 67 |
| PsyI | GACNNNGTC | 1 cut(s) | 20 |
| PvuI | CGATCG | 1 cut(s) | 89 |
| RsaI | GTAC | 1 cut(s) | 492 |
| RsaNI | GTAC | 1 cut(s) | 491 |
| RseI | CAYNNNNRTG | 1 cut(s) | 585 |
| SaqAI | TTAA | 5 cut(s) | 156, 213, 495, 572, 767 |
| SatI | GCNGC | 5 cut(s) | 565, 761, 800, 905, 908 |
| Sau3AI | GATC | 5 cut(s) | 86, 268, 409, 896, 937 |
| Sau96I | GGNCC | 2 cut(s) | 67, 293 |
| SchI | GAGTC | 1 cut(s) | 136 |
| SduI | GDGCHC | 1 cut(s) | 316 |
| SfcI | CTRYAG | 1 cut(s) | 618 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 585 |
| SmlI | CTYRAG | 3 cut(s) | 231, 329, 494 |
| SmoI | CTYRAG | 3 cut(s) | 231, 329, 494 |
| SpeI | ACTAGT | 1 cut(s) | 658 |
| SsiI | CCGC | 2 cut(s) | 27, 103 |
| SspMI | CTAG | 5 cut(s) | 345, 561, 584, 659, 833 |
| StyI | CCWWGG | 1 cut(s) | 296 |
| TaaI | ACNGT | 2 cut(s) | 622, 922 |
| TaqI | TCGA | 7 cut(s) | 5, 15, 85, 255, 271, 325, 722 |
| TfiI | GAWTC | 4 cut(s) | 415, 541, 629, 643 |
| Tru1I | TTAA | 5 cut(s) | 156, 213, 495, 572, 767 |
| Tru9I | TTAA | 5 cut(s) | 156, 213, 495, 572, 767 |
| TscAI | CASTG | 4 cut(s) | 57, 205, 366, 627 |
| TseFI | GTSAC | 1 cut(s) | 22 |
| TseI | GCWGC | 5 cut(s) | 564, 760, 799, 904, 907 |
| Tsp45I | GTSAC | 1 cut(s) | 22 |
| TspDTI | ATGAA | 3 cut(s) | 275, 466, 743 |
| TspRI | CASTG | 4 cut(s) | 57, 205, 366, 627 |
| Tth111I | GACNNNGTC | 1 cut(s) | 20 |
| Vha464I | CTTAAG | 1 cut(s) | 494 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| VspI | ATTAAT | 1 cut(s) | 572 |
| XapI | RAATTY | 3 cut(s) | 189, 209, 424 |
| XbaI | TCTAGA | 1 cut(s) | 583 |
| XceI | RCATGY | 1 cut(s) | 407 |
| XspI | CTAG | 5 cut(s) | 345, 561, 584, 659, 833 |