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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 14 |
| AccB1I | GGYRCC | 1 cut(s) | 487 |
| AccII | CGCG | 1 cut(s) | 95 |
| AciI | CCGC | 3 cut(s) | 80, 93, 416 |
| AclWI | GGATC | 1 cut(s) | 228 |
| AfaI | GTAC | 1 cut(s) | 199 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 56 |
| AgsI | TTSAA | 3 cut(s) | 30, 361, 382 |
| AjnI | CCWGG | 1 cut(s) | 162 |
| AluBI | AGCT | 1 cut(s) | 311 |
| AluI | AGCT | 1 cut(s) | 311 |
| Alw21I | GWGCWC | 2 cut(s) | 313, 368 |
| Alw26I | GTCTC | 1 cut(s) | 293 |
| AlwI | GGATC | 1 cut(s) | 228 |
| AoxI | GGCC | 1 cut(s) | 543 |
| ApeKI | GCWGC | 1 cut(s) | 521 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 329, 361 |
| AspLEI | GCGC | 1 cut(s) | 15 |
| AspS9I | GGNCC | 1 cut(s) | 543 |
| AsuHPI | GGTGA | 1 cut(s) | 38 |
| BanI | GGYRCC | 1 cut(s) | 487 |
| BanII | GRGCYC | 1 cut(s) | 313 |
| BbsI | GAAGAC | 2 cut(s) | 133, 509 |
| Bbv12I | GWGCWC | 2 cut(s) | 313, 368 |
| BbvI | GCAGC | 1 cut(s) | 533 |
| BccI | CCATC | 2 cut(s) | 127, 436 |
| BceAI | ACGGC | 1 cut(s) | 509 |
| BciT130I | CCWGG | 1 cut(s) | 164 |
| BciVI | GTATCC | 1 cut(s) | 254 |
| BcoDI | GTCTC | 1 cut(s) | 293 |
| BfaI | CTAG | 2 cut(s) | 56, 296 |
| BfuI | GTATCC | 1 cut(s) | 254 |
| BisI | GCNGC | 2 cut(s) | 93, 522 |
| BlsI | GCNGC | 2 cut(s) | 94, 523 |
| Bme1390I | CCNGG | 1 cut(s) | 164 |
| BmgT120I | GGNCC | 1 cut(s) | 543 |
| BmiI | GGNNCC | 1 cut(s) | 489 |
| BmrFI | CCNGG | 1 cut(s) | 164 |
| BmsI | GCATC | 2 cut(s) | 67, 508 |
| BpiI | GAAGAC | 2 cut(s) | 133, 509 |
| BpmI | CTGGAG | 1 cut(s) | 458 |
| Bpu10I | CCTNAGC | 2 cut(s) | 101, 387 |
| BsaI | GGTCTC | 1 cut(s) | 293 |
| BsaJI | CCNNGG | 3 cut(s) | 50, 162, 303 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 56 |
| Bse118I | RCCGGY | 1 cut(s) | 391 |
| BseBI | CCWGG | 1 cut(s) | 164 |
| BseDI | CCNNGG | 3 cut(s) | 50, 162, 303 |
| BseGI | GGATG | 2 cut(s) | 82, 192 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BseRI | GAGGAG | 1 cut(s) | 399 |
| BseXI | GCAGC | 1 cut(s) | 533 |
| Bsh1236I | CGCG | 1 cut(s) | 95 |
| BshFI | GGCC | 1 cut(s) | 545 |
| BshNI | GGYRCC | 1 cut(s) | 487 |
| BsiHKAI | GWGCWC | 2 cut(s) | 313, 368 |
| BsiSI | CCGG | 2 cut(s) | 392, 546 |
| BslFI | GGGAC | 1 cut(s) | 146 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 56 |
| BsmAI | GTCTC | 1 cut(s) | 293 |
| BsmFI | GGGAC | 1 cut(s) | 146 |
| BsmI | GAATGC | 1 cut(s) | 105 |
| BsnI | GGCC | 1 cut(s) | 545 |
| Bso31I | GGTCTC | 1 cut(s) | 293 |
| Bsp1286I | GDGCHC | 2 cut(s) | 313, 368 |
| Bsp143I | GATC | 1 cut(s) | 233 |
| Bsp19I | CCATGG | 1 cut(s) | 50 |
| BspACI | CCGC | 3 cut(s) | 80, 93, 416 |
| BspANI | GGCC | 1 cut(s) | 545 |
| BspFNI | CGCG | 1 cut(s) | 95 |
| BspLI | GGNNCC | 1 cut(s) | 489 |
| BspPI | GGATC | 1 cut(s) | 228 |
| BspT107I | GGYRCC | 1 cut(s) | 487 |
| BspTNI | GGTCTC | 1 cut(s) | 293 |
| BsrFI | RCCGGY | 1 cut(s) | 391 |
| BssAI | RCCGGY | 1 cut(s) | 391 |
| BssECI | CCNNGG | 3 cut(s) | 50, 162, 303 |
| BssMI | GATC | 1 cut(s) | 233 |
| BssT1I | CCWWGG | 2 cut(s) | 50, 303 |
| Bst2UI | CCWGG | 1 cut(s) | 164 |
| Bst4CI | ACNGT | 3 cut(s) | 202, 252, 532 |
| BstDEI | CTNAG | 2 cut(s) | 101, 387 |
| BstDSI | CCRYGG | 1 cut(s) | 50 |
| BstEII | GGTNACC | 1 cut(s) | 44 |
| BstF5I | GGATG | 2 cut(s) | 82, 192 |
| BstFNI | CGCG | 1 cut(s) | 95 |
| BstHHI | GCGC | 1 cut(s) | 15 |
| BstKTI | GATC | 1 cut(s) | 236 |
| BstMAI | GTCTC | 1 cut(s) | 293 |
| BstMBI | GATC | 1 cut(s) | 233 |
| BstNI | CCWGG | 1 cut(s) | 164 |
| BstPI | GGTNACC | 1 cut(s) | 44 |
| BstSCI | CCNGG | 1 cut(s) | 162 |
| BstUI | CGCG | 1 cut(s) | 95 |
| BstV1I | GCAGC | 1 cut(s) | 533 |
| BstV2I | GAAGAC | 2 cut(s) | 133, 509 |
| BsuI | GTATCC | 1 cut(s) | 254 |
| BsuRI | GGCC | 1 cut(s) | 545 |
| BtgI | CCRYGG | 1 cut(s) | 50 |
| BtsCI | GGATG | 2 cut(s) | 82, 192 |
| CfoI | GCGC | 1 cut(s) | 15 |
| Cfr10I | RCCGGY | 1 cut(s) | 391 |
| Cfr13I | GGNCC | 1 cut(s) | 543 |
| CseI | GACGC | 1 cut(s) | 462 |
| Csp6I | GTAC | 1 cut(s) | 198 |
| CviAII | CATG | 1 cut(s) | 51 |
| CviJI | RGCY | 9 cut(s) | 55, 155, 311, 330, 385, 391, 446, 524, 545 |
| CviKI_1 | RGCY | 9 cut(s) | 55, 155, 311, 330, 385, 391, 446, 524, 545 |
| CviQI | GTAC | 1 cut(s) | 198 |
| DdeI | CTNAG | 2 cut(s) | 101, 387 |
| DpnI | GATC | 1 cut(s) | 235 |
| DpnII | GATC | 1 cut(s) | 233 |
| Ecl136II | GAGCTC | 1 cut(s) | 311 |
| Eco130I | CCWWGG | 2 cut(s) | 50, 303 |
| Eco24I | GRGCYC | 1 cut(s) | 313 |
| Eco31I | GGTCTC | 1 cut(s) | 293 |
| Eco53kI | GAGCTC | 1 cut(s) | 311 |
| Eco91I | GGTNACC | 1 cut(s) | 44 |
| EcoICRI | GAGCTC | 1 cut(s) | 311 |
| EcoO65I | GGTNACC | 1 cut(s) | 44 |
| EcoRII | CCWGG | 1 cut(s) | 162 |
| EcoT14I | CCWWGG | 2 cut(s) | 50, 303 |
| EcoT38I | GRGCYC | 1 cut(s) | 313 |
| ErhI | CCWWGG | 2 cut(s) | 50, 303 |
| FaeI | CATG | 1 cut(s) | 54 |
| FaiI | YATR | 7 cut(s) | 39, 41, 52, 276, 420, 422, 455 |
| FaqI | GGGAC | 1 cut(s) | 146 |
| FatI | CATG | 1 cut(s) | 50 |
| FauNDI | CATATG | 1 cut(s) | 420 |
| Fnu4HI | GCNGC | 2 cut(s) | 93, 522 |
| FokI | GGATG | 2 cut(s) | 89, 199 |
| FriOI | GRGCYC | 1 cut(s) | 313 |
| Fsp4HI | GCNGC | 2 cut(s) | 93, 522 |
| FspBI | CTAG | 2 cut(s) | 56, 296 |
| FspI | TGCGCA | 1 cut(s) | 14 |
| GlaI | GCGC | 1 cut(s) | 14 |
| GluI | GCNGC | 2 cut(s) | 93, 522 |
| GsuI | CTGGAG | 1 cut(s) | 458 |
| HaeIII | GGCC | 1 cut(s) | 545 |
| HapII | CCGG | 2 cut(s) | 392, 546 |
| HgaI | GACGC | 1 cut(s) | 462 |
| HhaI | GCGC | 1 cut(s) | 15 |
| Hin1II | CATG | 1 cut(s) | 54 |
| Hin6I | GCGC | 1 cut(s) | 13 |
| HinP1I | GCGC | 1 cut(s) | 13 |
| HinfI | GANTC | 1 cut(s) | 23 |
| HpaII | CCGG | 2 cut(s) | 392, 546 |
| HphI | GGTGA | 1 cut(s) | 38 |
| Hpy188I | TCNGA | 3 cut(s) | 175, 248, 317 |
| Hpy188III | TCNNGA | 3 cut(s) | 224, 296, 437 |
| HpyAV | CCTTC | 2 cut(s) | 97, 501 |
| HpyCH4III | ACNGT | 3 cut(s) | 202, 252, 532 |
| HpyCH4V | TGCA | 1 cut(s) | 521 |
| HpyF3I | CTNAG | 2 cut(s) | 101, 387 |
| Hsp92II | CATG | 1 cut(s) | 54 |
| HspAI | GCGC | 1 cut(s) | 13 |
| Kzo9I | GATC | 1 cut(s) | 233 |
| LmnI | GCTCC | 1 cut(s) | 308 |
| LpnPI | CCDG | 4 cut(s) | 149, 176, 405, 422 |
| Lsp1109I | GCAGC | 1 cut(s) | 533 |
| LweI | GCATC | 2 cut(s) | 67, 508 |
| MaeI | CTAG | 2 cut(s) | 56, 296 |
| MaeIII | GTNAC | 2 cut(s) | 44, 526 |
| MalI | GATC | 1 cut(s) | 235 |
| MboI | GATC | 1 cut(s) | 233 |
| MboII | GAAGA | 4 cut(s) | 18, 133, 337, 514 |
| MhlI | GDGCHC | 2 cut(s) | 313, 368 |
| MluCI | AATT | 2 cut(s) | 211, 482 |
| MmeI | TCCRAC | 2 cut(s) | 271, 351 |
| MnlI | CCTC | 7 cut(s) | 169, 177, 311, 391, 420, 459, 534 |
| MseI | TTAA | 2 cut(s) | 255, 462 |
| MspI | CCGG | 2 cut(s) | 392, 546 |
| MspR9I | CCNGG | 1 cut(s) | 164 |
| Mva1269I | GAATGC | 1 cut(s) | 105 |
| MvaI | CCWGG | 1 cut(s) | 164 |
| MvnI | CGCG | 1 cut(s) | 95 |
| NcoI | CCATGG | 1 cut(s) | 50 |
| NdeI | CATATG | 1 cut(s) | 420 |
| NdeII | GATC | 1 cut(s) | 233 |
| NlaIII | CATG | 1 cut(s) | 54 |
| NlaIV | GGNNCC | 1 cut(s) | 489 |
| NmuCI | GTSAC | 2 cut(s) | 44, 526 |
| NsbI | TGCGCA | 1 cut(s) | 14 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 222 |
| PctI | GAATGC | 1 cut(s) | 105 |
| PfeI | GAWTC | 1 cut(s) | 23 |
| PflFI | GACNNNGTC | 2 cut(s) | 137, 472 |
| PkrI | GCNGC | 2 cut(s) | 94, 523 |
| Psp124BI | GAGCTC | 1 cut(s) | 313 |
| Psp6I | CCWGG | 1 cut(s) | 162 |
| PspEI | GGTNACC | 1 cut(s) | 44 |
| PspGI | CCWGG | 1 cut(s) | 162 |
| PspN4I | GGNNCC | 1 cut(s) | 489 |
| PspPI | GGNCC | 1 cut(s) | 543 |
| PsyI | GACNNNGTC | 2 cut(s) | 137, 472 |
| RsaI | GTAC | 1 cut(s) | 199 |
| RsaNI | GTAC | 1 cut(s) | 198 |
| SacI | GAGCTC | 1 cut(s) | 313 |
| SaqAI | TTAA | 2 cut(s) | 255, 462 |
| SatI | GCNGC | 2 cut(s) | 93, 522 |
| Sau3AI | GATC | 1 cut(s) | 233 |
| Sau96I | GGNCC | 1 cut(s) | 543 |
| ScrFI | CCNGG | 1 cut(s) | 164 |
| SduI | GDGCHC | 2 cut(s) | 313, 368 |
| SetI | ASST | 8 cut(s) | 141, 152, 161, 305, 313, 380, 402, 433 |
| SfaNI | GCATC | 2 cut(s) | 67, 508 |
| Sse9I | AATT | 2 cut(s) | 211, 482 |
| SsiI | CCGC | 3 cut(s) | 80, 93, 416 |
| SspMI | CTAG | 2 cut(s) | 56, 296 |
| SstI | GAGCTC | 1 cut(s) | 313 |
| StyD4I | CCNGG | 1 cut(s) | 162 |
| StyI | CCWWGG | 2 cut(s) | 50, 303 |
| TaaI | ACNGT | 3 cut(s) | 202, 252, 532 |
| TaqI | TCGA | 5 cut(s) | 216, 225, 232, 259, 332 |
| TasI | AATT | 2 cut(s) | 211, 482 |
| TauI | GCSGC | 1 cut(s) | 95 |
| TfiI | GAWTC | 1 cut(s) | 23 |
| Tru1I | TTAA | 2 cut(s) | 255, 462 |
| Tru9I | TTAA | 2 cut(s) | 255, 462 |
| TseFI | GTSAC | 2 cut(s) | 44, 526 |
| TseI | GCWGC | 1 cut(s) | 521 |
| Tsp45I | GTSAC | 2 cut(s) | 44, 526 |
| TspDTI | ATGAA | 1 cut(s) | 36 |
| TspGWI | ACGGA | 2 cut(s) | 197, 226 |
| Tth111I | GACNNNGTC | 2 cut(s) | 137, 472 |
| XbaI | TCTAGA | 1 cut(s) | 295 |
| XspI | CTAG | 2 cut(s) | 56, 296 |