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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 49 |
| AccB1I | GGYRCC | 1 cut(s) | 49 |
| AccBSI | CCGCTC | 1 cut(s) | 216 |
| AciI | CCGC | 5 cut(s) | 57, 216, 236, 369, 376 |
| AclWI | GGATC | 1 cut(s) | 203 |
| AcoI | YGGCCR | 1 cut(s) | 217 |
| AfaI | GTAC | 2 cut(s) | 51, 154 |
| AfeI | AGCGCT | 1 cut(s) | 162 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 97, 299 |
| AflIII | ACRYGT | 1 cut(s) | 149 |
| AgsI | TTSAA | 1 cut(s) | 170 |
| AjiI | CACGTC | 1 cut(s) | 384 |
| AjnI | CCWGG | 3 cut(s) | 42, 267, 339 |
| AluBI | AGCT | 2 cut(s) | 35, 137 |
| AluI | AGCT | 2 cut(s) | 35, 137 |
| Alw26I | GTCTC | 1 cut(s) | 182 |
| AlwI | GGATC | 1 cut(s) | 203 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 59, 340 |
| Ama87I | CYCGRG | 1 cut(s) | 185 |
| Aor51HI | AGCGCT | 1 cut(s) | 162 |
| AoxI | GGCC | 2 cut(s) | 217, 265 |
| ApeKI | GCWGC | 1 cut(s) | 59 |
| Asp718I | GGTACC | 1 cut(s) | 49 |
| AspLEI | GCGC | 2 cut(s) | 163, 292 |
| AspS9I | GGNCC | 3 cut(s) | 40, 88, 337 |
| AsuHPI | GGTGA | 1 cut(s) | 296 |
| AvaI | CYCGRG | 1 cut(s) | 185 |
| AvaII | GGWCC | 3 cut(s) | 40, 88, 337 |
| BanI | GGYRCC | 1 cut(s) | 49 |
| BbvI | GCAGC | 1 cut(s) | 46 |
| BccI | CCATC | 1 cut(s) | 359 |
| BceAI | ACGGC | 1 cut(s) | 240 |
| BciT130I | CCWGG | 3 cut(s) | 44, 269, 341 |
| BcoDI | GTCTC | 1 cut(s) | 182 |
| BfaI | CTAG | 1 cut(s) | 314 |
| BfoI | RGCGCY | 2 cut(s) | 164, 293 |
| BisI | GCNGC | 3 cut(s) | 57, 60, 217 |
| BlsI | GCNGC | 3 cut(s) | 58, 61, 218 |
| Bme1390I | CCNGG | 3 cut(s) | 44, 269, 341 |
| Bme18I | GGWCC | 3 cut(s) | 40, 88, 337 |
| BmeT110I | CYCGRG | 1 cut(s) | 185 |
| BmgBI | CACGTC | 1 cut(s) | 384 |
| BmgT120I | GGNCC | 3 cut(s) | 40, 88, 337 |
| BmiI | GGNNCC | 1 cut(s) | 51 |
| BmrFI | CCNGG | 3 cut(s) | 44, 269, 341 |
| BmsI | GCATC | 1 cut(s) | 13 |
| BpmI | CTGGAG | 1 cut(s) | 65 |
| BpuEI | CTTGAG | 1 cut(s) | 113 |
| BsaI | GGTCTC | 1 cut(s) | 182 |
| BsaJI | CCNNGG | 2 cut(s) | 12, 184 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 97, 299 |
| Bse118I | RCCGGY | 1 cut(s) | 292 |
| BseBI | CCWGG | 3 cut(s) | 44, 269, 341 |
| BseDI | CCNNGG | 2 cut(s) | 12, 184 |
| BseGI | GGATG | 1 cut(s) | 370 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 97, 299 |
| BseX3I | CGGCCG | 1 cut(s) | 217 |
| BseXI | GCAGC | 1 cut(s) | 46 |
| BseYI | CCCAGC | 2 cut(s) | 298, 319 |
| BsgI | GTGCAG | 1 cut(s) | 45 |
| Bsh1285I | CGRYCG | 1 cut(s) | 220 |
| BshFI | GGCC | 2 cut(s) | 219, 267 |
| BshNI | GGYRCC | 1 cut(s) | 49 |
| BsiEI | CGRYCG | 1 cut(s) | 220 |
| BsiHKCI | CYCGRG | 1 cut(s) | 185 |
| BsiSI | CCGG | 2 cut(s) | 220, 293 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 97, 299 |
| BsmAI | GTCTC | 1 cut(s) | 182 |
| BsmI | GAATGC | 2 cut(s) | 86, 350 |
| BsnI | GGCC | 2 cut(s) | 219, 267 |
| Bso31I | GGTCTC | 1 cut(s) | 182 |
| BsoBI | CYCGRG | 1 cut(s) | 185 |
| Bsp1407I | TGTACA | 1 cut(s) | 152 |
| Bsp143I | GATC | 1 cut(s) | 208 |
| BspACI | CCGC | 5 cut(s) | 57, 216, 236, 369, 376 |
| BspANI | GGCC | 2 cut(s) | 219, 267 |
| BspLI | GGNNCC | 1 cut(s) | 51 |
| BspPI | GGATC | 1 cut(s) | 203 |
| BspT107I | GGYRCC | 1 cut(s) | 49 |
| BspTNI | GGTCTC | 1 cut(s) | 182 |
| BsrBI | CCGCTC | 1 cut(s) | 216 |
| BsrFI | RCCGGY | 1 cut(s) | 292 |
| BsrGI | TGTACA | 1 cut(s) | 152 |
| BssAI | RCCGGY | 1 cut(s) | 292 |
| BssECI | CCNNGG | 2 cut(s) | 12, 184 |
| BssMI | GATC | 1 cut(s) | 208 |
| BssT1I | CCWWGG | 1 cut(s) | 12 |
| Bst2UI | CCWGG | 3 cut(s) | 44, 269, 341 |
| Bst4CI | ACNGT | 2 cut(s) | 157, 284 |
| BstAUI | TGTACA | 1 cut(s) | 152 |
| BstC8I | GCNNGC | 1 cut(s) | 378 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 95 |
| BstF5I | GGATG | 1 cut(s) | 370 |
| BstH2I | RGCGCY | 2 cut(s) | 164, 293 |
| BstHHI | GCGC | 2 cut(s) | 163, 292 |
| BstKTI | GATC | 1 cut(s) | 211 |
| BstMAI | GTCTC | 1 cut(s) | 182 |
| BstMBI | GATC | 1 cut(s) | 208 |
| BstMCI | CGRYCG | 1 cut(s) | 220 |
| BstNI | CCWGG | 3 cut(s) | 44, 269, 341 |
| BstNSI | RCATGY | 1 cut(s) | 153 |
| BstSCI | CCNGG | 3 cut(s) | 42, 267, 339 |
| BstV1I | GCAGC | 1 cut(s) | 46 |
| BstX2I | RGATCY | 1 cut(s) | 208 |
| BstYI | RGATCY | 1 cut(s) | 208 |
| BstZI | CGGCCG | 1 cut(s) | 217 |
| BsuRI | GGCC | 2 cut(s) | 219, 267 |
| BtrI | CACGTC | 1 cut(s) | 384 |
| BtsCI | GGATG | 1 cut(s) | 370 |
| BtsI | GCAGTG | 1 cut(s) | 30 |
| BtsIMutI | CAGTG | 2 cut(s) | 30, 204 |
| Cac8I | GCNNGC | 1 cut(s) | 378 |
| CaiI | CAGNNNCTG | 2 cut(s) | 59, 340 |
| CfoI | GCGC | 2 cut(s) | 163, 292 |
| Cfr10I | RCCGGY | 1 cut(s) | 292 |
| Cfr13I | GGNCC | 3 cut(s) | 40, 88, 337 |
| Csp6I | GTAC | 2 cut(s) | 50, 153 |
| CviAII | CATG | 2 cut(s) | 85, 150 |
| CviJI | RGCY | 7 cut(s) | 10, 35, 56, 129, 137, 219, 267 |
| CviKI_1 | RGCY | 7 cut(s) | 10, 35, 56, 129, 137, 219, 267 |
| CviQI | GTAC | 2 cut(s) | 50, 153 |
| DpnI | GATC | 1 cut(s) | 210 |
| DpnII | GATC | 1 cut(s) | 208 |
| EaeI | YGGCCR | 1 cut(s) | 217 |
| EagI | CGGCCG | 1 cut(s) | 217 |
| EciI | GGCGGA | 1 cut(s) | 384 |
| EclXI | CGGCCG | 1 cut(s) | 217 |
| Eco130I | CCWWGG | 1 cut(s) | 12 |
| Eco31I | GGTCTC | 1 cut(s) | 182 |
| Eco47I | GGWCC | 3 cut(s) | 40, 88, 337 |
| Eco47III | AGCGCT | 1 cut(s) | 162 |
| Eco52I | CGGCCG | 1 cut(s) | 217 |
| Eco88I | CYCGRG | 1 cut(s) | 185 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 95 |
| EcoO109I | RGGNCCY | 1 cut(s) | 337 |
| EcoRII | CCWGG | 3 cut(s) | 42, 267, 339 |
| EcoT14I | CCWWGG | 1 cut(s) | 12 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 86 |
| ErhI | CCWWGG | 1 cut(s) | 12 |
| FaeI | CATG | 2 cut(s) | 88, 153 |
| FaiI | YATR | 2 cut(s) | 86, 151 |
| FatI | CATG | 2 cut(s) | 84, 149 |
| FauI | CCCGC | 1 cut(s) | 369 |
| Fnu4HI | GCNGC | 3 cut(s) | 57, 60, 217 |
| FokI | GGATG | 1 cut(s) | 377 |
| Fsp4HI | GCNGC | 3 cut(s) | 57, 60, 217 |
| FspBI | CTAG | 1 cut(s) | 314 |
| GlaI | GCGC | 2 cut(s) | 162, 291 |
| GluI | GCNGC | 3 cut(s) | 57, 60, 217 |
| GsaI | CCCAGC | 2 cut(s) | 302, 323 |
| GsuI | CTGGAG | 1 cut(s) | 65 |
| HaeII | RGCGCY | 2 cut(s) | 164, 293 |
| HaeIII | GGCC | 2 cut(s) | 219, 267 |
| HapII | CCGG | 2 cut(s) | 220, 293 |
| HhaI | GCGC | 2 cut(s) | 163, 292 |
| Hin1II | CATG | 2 cut(s) | 88, 153 |
| Hin6I | GCGC | 2 cut(s) | 161, 290 |
| HinP1I | GCGC | 2 cut(s) | 161, 290 |
| HindIII | AAGCTT | 1 cut(s) | 135 |
| HinfI | GANTC | 2 cut(s) | 245, 250 |
| HpaII | CCGG | 2 cut(s) | 220, 293 |
| HphI | GGTGA | 1 cut(s) | 296 |
| Hpy188I | TCNGA | 1 cut(s) | 213 |
| Hpy188III | TCNNGA | 1 cut(s) | 38 |
| Hpy99I | CGWCG | 1 cut(s) | 385 |
| HpyAV | CCTTC | 3 cut(s) | 91, 167, 366 |
| HpyCH4III | ACNGT | 2 cut(s) | 157, 284 |
| HpyCH4IV | ACGT | 1 cut(s) | 383 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 62, 84, 113, 348 |
| HpySE526I | ACGT | 1 cut(s) | 383 |
| Hsp92II | CATG | 2 cut(s) | 88, 153 |
| HspAI | GCGC | 2 cut(s) | 161, 290 |
| KpnI | GGTACC | 1 cut(s) | 53 |
| Kzo9I | GATC | 1 cut(s) | 208 |
| Lsp1109I | GCAGC | 1 cut(s) | 46 |
| LweI | GCATC | 1 cut(s) | 13 |
| MaeI | CTAG | 1 cut(s) | 314 |
| MaeII | ACGT | 1 cut(s) | 383 |
| MaeIII | GTNAC | 2 cut(s) | 122, 278 |
| MalI | GATC | 1 cut(s) | 210 |
| MbiI | CCGCTC | 1 cut(s) | 216 |
| MboI | GATC | 1 cut(s) | 208 |
| MboII | GAAGA | 1 cut(s) | 182 |
| MflI | RGATCY | 1 cut(s) | 208 |
| MlyI | GAGTC | 1 cut(s) | 244 |
| MnlI | CCTC | 3 cut(s) | 40, 194, 344 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 86 |
| MspA1I | CMGCKG | 1 cut(s) | 59 |
| MspI | CCGG | 2 cut(s) | 220, 293 |
| MspR9I | CCNGG | 3 cut(s) | 44, 269, 341 |
| Mva1269I | GAATGC | 2 cut(s) | 86, 350 |
| MvaI | CCWGG | 3 cut(s) | 44, 269, 341 |
| NdeII | GATC | 1 cut(s) | 208 |
| NlaIII | CATG | 2 cut(s) | 88, 153 |
| NlaIV | GGNNCC | 1 cut(s) | 51 |
| NmuCI | GTSAC | 1 cut(s) | 278 |
| NsiI | ATGCAT | 2 cut(s) | 6, 86 |
| NspI | RCATGY | 1 cut(s) | 153 |
| PciI | ACATGT | 1 cut(s) | 149 |
| PctI | GAATGC | 2 cut(s) | 86, 350 |
| PfeI | GAWTC | 1 cut(s) | 245 |
| PfoI | TCCNGGA | 1 cut(s) | 339 |
| PkrI | GCNGC | 3 cut(s) | 58, 61, 218 |
| PleI | GAGTC | 1 cut(s) | 244 |
| PpsI | GAGTC | 1 cut(s) | 244 |
| PpuMI | RGGWCCY | 1 cut(s) | 337 |
| PscI | ACATGT | 1 cut(s) | 149 |
| Psp5II | RGGWCCY | 1 cut(s) | 337 |
| Psp6I | CCWGG | 3 cut(s) | 42, 267, 339 |
| PspFI | CCCAGC | 2 cut(s) | 298, 319 |
| PspGI | CCWGG | 3 cut(s) | 42, 267, 339 |
| PspN4I | GGNNCC | 1 cut(s) | 51 |
| PspPI | GGNCC | 3 cut(s) | 40, 88, 337 |
| PspPPI | RGGWCCY | 1 cut(s) | 337 |
| PstNI | CAGNNNCTG | 2 cut(s) | 59, 340 |
| PsuI | RGATCY | 1 cut(s) | 208 |
| RsaI | GTAC | 2 cut(s) | 51, 154 |
| RsaNI | GTAC | 2 cut(s) | 50, 153 |
| SatI | GCNGC | 3 cut(s) | 57, 60, 217 |
| Sau3AI | GATC | 1 cut(s) | 208 |
| Sau96I | GGNCC | 3 cut(s) | 40, 88, 337 |
| SchI | GAGTC | 1 cut(s) | 244 |
| ScrFI | CCNGG | 3 cut(s) | 44, 269, 341 |
| SfaNI | GCATC | 1 cut(s) | 13 |
| SgrAI | CRCCGGYG | 1 cut(s) | 292 |
| SinI | GGWCC | 3 cut(s) | 40, 88, 337 |
| SmlI | CTYRAG | 1 cut(s) | 92 |
| SmoI | CTYRAG | 1 cut(s) | 92 |
| SsiI | CCGC | 5 cut(s) | 57, 216, 236, 369, 376 |
| SspMI | CTAG | 1 cut(s) | 314 |
| StyD4I | CCNGG | 3 cut(s) | 42, 267, 339 |
| StyI | CCWWGG | 1 cut(s) | 12 |
| TaaI | ACNGT | 2 cut(s) | 157, 284 |
| TaiI | ACGT | 1 cut(s) | 386 |
| TaqI | TCGA | 1 cut(s) | 248 |
| TatI | WGTACW | 1 cut(s) | 152 |
| TauI | GCSGC | 2 cut(s) | 59, 219 |
| TfiI | GAWTC | 1 cut(s) | 245 |
| TscAI | CASTG | 2 cut(s) | 30, 204 |
| TseFI | GTSAC | 1 cut(s) | 278 |
| TseI | GCWGC | 1 cut(s) | 59 |
| Tsp45I | GTSAC | 1 cut(s) | 278 |
| TspRI | CASTG | 2 cut(s) | 30, 204 |
| VpaK11BI | GGWCC | 3 cut(s) | 40, 88, 337 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 95 |
| XceI | RCATGY | 1 cut(s) | 153 |
| XspI | CTAG | 1 cut(s) | 314 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 86 |