Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 192, 220, 423 |
| AccB1I | GGYRCC | 1 cut(s) | 5 |
| AccBSI | CCGCTC | 1 cut(s) | 199 |
| AccII | CGCG | 2 cut(s) | 98, 149 |
| AciI | CCGC | 5 cut(s) | 98, 147, 197, 323, 1019 |
| AclWI | GGATC | 4 cut(s) | 138, 178, 638, 772 |
| AcoI | YGGCCR | 2 cut(s) | 194, 826 |
| AcuI | CTGAAG | 1 cut(s) | 542 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 73 |
| AgsI | TTSAA | 3 cut(s) | 304, 392, 917 |
| AjiI | CACGTC | 1 cut(s) | 164 |
| AjnI | CCWGG | 1 cut(s) | 759 |
| AleI | CACNNNNGTG | 1 cut(s) | 51 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 335, 367 |
| AluBI | AGCT | 4 cut(s) | 457, 720, 976, 1034 |
| AluI | AGCT | 4 cut(s) | 457, 720, 976, 1034 |
| AlwI | GGATC | 4 cut(s) | 138, 178, 638, 772 |
| Ama87I | CYCGRG | 1 cut(s) | 544 |
| AoxI | GGCC | 5 cut(s) | 87, 194, 287, 540, 826 |
| ApeKI | GCWGC | 3 cut(s) | 158, 419, 946 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 225, 257 |
| AspS9I | GGNCC | 4 cut(s) | 226, 541, 707, 907 |
| AsuC2I | CCSGG | 3 cut(s) | 545, 546, 992 |
| AsuHPI | GGTGA | 4 cut(s) | 193, 461, 800, 1042 |
| AvaI | CYCGRG | 1 cut(s) | 544 |
| AvaII | GGWCC | 3 cut(s) | 226, 707, 907 |
| BanI | GGYRCC | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 928 |
| BbvI | GCAGC | 3 cut(s) | 145, 406, 958 |
| BccI | CCATC | 1 cut(s) | 413 |
| BceAI | ACGGC | 2 cut(s) | 102, 813 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 212, 246 |
| BciT130I | CCWGG | 1 cut(s) | 761 |
| BcnI | CCSGG | 3 cut(s) | 545, 546, 992 |
| BfaI | CTAG | 3 cut(s) | 714, 1062, 1068 |
| BfmI | CTRYAG | 1 cut(s) | 221 |
| BfuAI | ACCTGC | 3 cut(s) | 192, 220, 423 |
| BglII | AGATCT | 1 cut(s) | 797 |
| BisI | GCNGC | 5 cut(s) | 99, 159, 197, 420, 947 |
| BlsI | GCNGC | 5 cut(s) | 100, 160, 198, 421, 948 |
| Bme1390I | CCNGG | 4 cut(s) | 545, 546, 761, 992 |
| Bme18I | GGWCC | 3 cut(s) | 226, 707, 907 |
| BmeT110I | CYCGRG | 1 cut(s) | 544 |
| BmgBI | CACGTC | 1 cut(s) | 164 |
| BmgT120I | GGNCC | 4 cut(s) | 226, 541, 707, 907 |
| BmiI | GGNNCC | 6 cut(s) | 7, 543, 708, 891, 909, 927 |
| BmrFI | CCNGG | 4 cut(s) | 545, 546, 761, 992 |
| BmrI | ACTGGG | 2 cut(s) | 782, 905 |
| BmsI | GCATC | 4 cut(s) | 110, 334, 774, 1012 |
| BmuI | ACTGGG | 2 cut(s) | 782, 905 |
| BpmI | CTGGAG | 1 cut(s) | 716 |
| BpuEI | CTTGAG | 1 cut(s) | 962 |
| BpuMI | CCSGG | 3 cut(s) | 545, 546, 992 |
| BsaBI | GATNNNNATC | 1 cut(s) | 675 |
| BsaJI | CCNNGG | 5 cut(s) | 72, 339, 543, 544, 760 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1042, 1072 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 73 |
| Bse1I | ACTGG | 2 cut(s) | 788, 911 |
| Bse3DI | GCAATG | 1 cut(s) | 423 |
| Bse8I | GATNNNNATC | 1 cut(s) | 675 |
| BseBI | CCWGG | 1 cut(s) | 761 |
| BseDI | CCNNGG | 5 cut(s) | 72, 339, 543, 544, 760 |
| BseGI | GGATG | 7 cut(s) | 85, 101, 349, 658, 765, 866, 1027 |
| BseJI | GATNNNNATC | 1 cut(s) | 675 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 73 |
| BseMI | GCAATG | 1 cut(s) | 423 |
| BseMII | CTCAG | 3 cut(s) | 839, 886, 945 |
| BseNI | ACTGG | 2 cut(s) | 788, 911 |
| BseRI | GAGGAG | 1 cut(s) | 899 |
| BseXI | GCAGC | 3 cut(s) | 145, 406, 958 |
| BsgI | GTGCAG | 1 cut(s) | 144 |
| Bsh1236I | CGCG | 2 cut(s) | 98, 149 |
| BshFI | GGCC | 5 cut(s) | 89, 196, 289, 542, 828 |
| BshNI | GGYRCC | 1 cut(s) | 5 |
| BsiHKCI | CYCGRG | 1 cut(s) | 544 |
| BsiSI | CCGG | 3 cut(s) | 290, 545, 992 |
| BslFI | GGGAC | 2 cut(s) | 893, 949 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 73 |
| BsmFI | GGGAC | 2 cut(s) | 893, 949 |
| BsnI | GGCC | 5 cut(s) | 89, 196, 289, 542, 828 |
| BsoBI | CYCGRG | 1 cut(s) | 544 |
| Bsp1286I | GDGCHC | 1 cut(s) | 928 |
| Bsp143I | GATC | 8 cut(s) | 133, 143, 170, 630, 699, 777, 797, 863 |
| Bsp19I | CCATGG | 1 cut(s) | 72 |
| BspACI | CCGC | 5 cut(s) | 98, 147, 197, 323, 1019 |
| BspANI | GGCC | 5 cut(s) | 89, 196, 289, 542, 828 |
| BspCNI | CTCAG | 3 cut(s) | 840, 885, 946 |
| BspFNI | CGCG | 2 cut(s) | 98, 149 |
| BspLI | GGNNCC | 6 cut(s) | 7, 543, 708, 891, 909, 927 |
| BspMAI | CTGCAG | 1 cut(s) | 225 |
| BspMI | ACCTGC | 3 cut(s) | 192, 220, 423 |
| BspPI | GGATC | 4 cut(s) | 138, 178, 638, 772 |
| BspT107I | GGYRCC | 1 cut(s) | 5 |
| BsrBI | CCGCTC | 1 cut(s) | 199 |
| BsrDI | GCAATG | 1 cut(s) | 423 |
| BsrI | ACTGG | 2 cut(s) | 788, 911 |
| BssECI | CCNNGG | 5 cut(s) | 72, 339, 543, 544, 760 |
| BssMI | GATC | 8 cut(s) | 133, 143, 170, 630, 699, 777, 797, 863 |
| BssT1I | CCWWGG | 2 cut(s) | 72, 339 |
| Bst2UI | CCWGG | 1 cut(s) | 761 |
| Bst6I | CTCTTC | 1 cut(s) | 552 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 107 |
| BstC8I | GCNNGC | 4 cut(s) | 189, 430, 944, 1036 |
| BstDEI | CTNAG | 3 cut(s) | 848, 872, 954 |
| BstDSI | CCRYGG | 1 cut(s) | 72 |
| BstF5I | GGATG | 7 cut(s) | 85, 101, 349, 658, 765, 866, 1027 |
| BstFNI | CGCG | 2 cut(s) | 98, 149 |
| BstKTI | GATC | 8 cut(s) | 136, 146, 173, 633, 702, 780, 800, 866 |
| BstMBI | GATC | 8 cut(s) | 133, 143, 170, 630, 699, 777, 797, 863 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 95, 107, 155, 193, 344, 425, 691, 943, 1031 |
| BstNI | CCWGG | 1 cut(s) | 761 |
| BstNSI | RCATGY | 1 cut(s) | 500 |
| BstSCI | CCNGG | 4 cut(s) | 543, 544, 759, 990 |
| BstSFI | CTRYAG | 1 cut(s) | 221 |
| BstUI | CGCG | 2 cut(s) | 98, 149 |
| BstV1I | GCAGC | 3 cut(s) | 145, 406, 958 |
| BstX2I | RGATCY | 2 cut(s) | 630, 797 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 626 |
| BstYI | RGATCY | 2 cut(s) | 630, 797 |
| BsuRI | GGCC | 5 cut(s) | 89, 196, 289, 542, 828 |
| BtgI | CCRYGG | 1 cut(s) | 72 |
| BtrI | CACGTC | 1 cut(s) | 164 |
| BtsCI | GGATG | 7 cut(s) | 85, 101, 349, 658, 765, 866, 1027 |
| BtsI | GCAGTG | 1 cut(s) | 218 |
| BtsIMutI | CAGTG | 1 cut(s) | 218 |
| BveI | ACCTGC | 3 cut(s) | 192, 220, 423 |
| Cac8I | GCNNGC | 4 cut(s) | 189, 430, 944, 1036 |
| Cfr13I | GGNCC | 4 cut(s) | 226, 541, 707, 907 |
| Cfr9I | CCCGGG | 1 cut(s) | 544 |
| CviAII | CATG | 4 cut(s) | 73, 415, 497, 620 |
| DdeI | CTNAG | 3 cut(s) | 848, 872, 954 |
| DpnI | GATC | 8 cut(s) | 135, 145, 172, 632, 701, 779, 799, 865 |
| DpnII | GATC | 8 cut(s) | 133, 143, 170, 630, 699, 777, 797, 863 |
| DraI | TTTAAA | 1 cut(s) | 274 |
| EaeI | YGGCCR | 2 cut(s) | 194, 826 |
| Eam1104I | CTCTTC | 1 cut(s) | 552 |
| EarI | CTCTTC | 1 cut(s) | 552 |
| Eco130I | CCWWGG | 2 cut(s) | 72, 339 |
| Eco24I | GRGCYC | 1 cut(s) | 928 |
| Eco47I | GGWCC | 3 cut(s) | 226, 707, 907 |
| Eco57I | CTGAAG | 1 cut(s) | 542 |
| Eco88I | CYCGRG | 1 cut(s) | 544 |
| EcoO109I | RGGNCCY | 2 cut(s) | 226, 707 |
| EcoRII | CCWGG | 1 cut(s) | 759 |
| EcoT14I | CCWWGG | 2 cut(s) | 72, 339 |
| EcoT38I | GRGCYC | 1 cut(s) | 928 |
| ErhI | CCWWGG | 2 cut(s) | 72, 339 |
| FaeI | CATG | 4 cut(s) | 76, 418, 500, 623 |
| FaqI | GGGAC | 2 cut(s) | 893, 949 |
| FatI | CATG | 4 cut(s) | 72, 414, 496, 619 |
| Fnu4HI | GCNGC | 5 cut(s) | 99, 159, 197, 420, 947 |
| FokI | GGATG | 7 cut(s) | 88, 92, 356, 645, 752, 853, 1034 |
| FriOI | GRGCYC | 1 cut(s) | 928 |
| Fsp4HI | GCNGC | 5 cut(s) | 99, 159, 197, 420, 947 |
| FspBI | CTAG | 3 cut(s) | 714, 1062, 1068 |
| GluI | GCNGC | 5 cut(s) | 99, 159, 197, 420, 947 |
| GsuI | CTGGAG | 1 cut(s) | 716 |
| HaeIII | GGCC | 5 cut(s) | 89, 196, 289, 542, 828 |
| HapII | CCGG | 3 cut(s) | 290, 545, 992 |
| Hin1II | CATG | 4 cut(s) | 76, 418, 500, 623 |
| HindIII | AAGCTT | 1 cut(s) | 1032 |
| HinfI | GANTC | 2 cut(s) | 676, 730 |
| HpaII | CCGG | 3 cut(s) | 290, 545, 992 |
| HphI | GGTGA | 4 cut(s) | 193, 461, 800, 1042 |
| Hpy188I | TCNGA | 3 cut(s) | 522, 856, 955 |
| Hpy188III | TCNNGA | 5 cut(s) | 141, 260, 769, 878, 979 |
| Hpy99I | CGWCG | 2 cut(s) | 168, 237 |
| HpyAV | CCTTC | 7 cut(s) | 103, 239, 523, 684, 720, 939, 960 |
| HpyCH4IV | ACGT | 2 cut(s) | 163, 235 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 95, 107, 155, 193, 344, 425, 691, 943, 1031 |
| HpyF3I | CTNAG | 3 cut(s) | 848, 872, 954 |
| HpySE526I | ACGT | 2 cut(s) | 163, 235 |
| Hsp92II | CATG | 4 cut(s) | 76, 418, 500, 623 |
| Kzo9I | GATC | 8 cut(s) | 133, 143, 170, 630, 699, 777, 797, 863 |
| LmnI | GCTCC | 4 cut(s) | 220, 717, 895, 931 |
| Lsp1109I | GCAGC | 3 cut(s) | 145, 406, 958 |
| LweI | GCATC | 4 cut(s) | 110, 334, 774, 1012 |
| MaeI | CTAG | 3 cut(s) | 714, 1062, 1068 |
| MaeII | ACGT | 2 cut(s) | 163, 235 |
| MaeIII | GTNAC | 1 cut(s) | 82 |
| MalI | GATC | 8 cut(s) | 135, 145, 172, 632, 701, 779, 799, 865 |
| MbiI | CCGCTC | 1 cut(s) | 199 |
| MboI | GATC | 8 cut(s) | 133, 143, 170, 630, 699, 777, 797, 863 |
| MboII | GAAGA | 4 cut(s) | 346, 535, 562, 569 |
| MflI | RGATCY | 2 cut(s) | 630, 797 |
| MhlI | GDGCHC | 1 cut(s) | 928 |
| MluCI | AATT | 2 cut(s) | 443, 607 |
| MlyI | GAGTC | 1 cut(s) | 739 |
| MseI | TTAA | 2 cut(s) | 273, 441 |
| MslI | CAYNNNNRTG | 2 cut(s) | 51, 624 |
| MspI | CCGG | 3 cut(s) | 290, 545, 992 |
| MspR9I | CCNGG | 4 cut(s) | 545, 546, 761, 992 |
| MvaI | CCWGG | 1 cut(s) | 761 |
| MvnI | CGCG | 2 cut(s) | 98, 149 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 95, 107, 155, 193, 344, 425, 691, 943, 1031 |
| NciI | CCSGG | 3 cut(s) | 545, 546, 992 |
| NcoI | CCATGG | 1 cut(s) | 72 |
| NdeII | GATC | 8 cut(s) | 133, 143, 170, 630, 699, 777, 797, 863 |
| NlaIII | CATG | 4 cut(s) | 76, 418, 500, 623 |
| NlaIV | GGNNCC | 6 cut(s) | 7, 543, 708, 891, 909, 927 |
| NmuCI | GTSAC | 1 cut(s) | 82 |
| NspI | RCATGY | 1 cut(s) | 500 |
| OliI | CACNNNNGTG | 1 cut(s) | 51 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 241 |
| PfeI | GAWTC | 1 cut(s) | 676 |
| PfoI | TCCNGGA | 1 cut(s) | 990 |
| PkrI | GCNGC | 5 cut(s) | 100, 160, 198, 421, 948 |
| PleI | GAGTC | 1 cut(s) | 738 |
| PpsI | GAGTC | 1 cut(s) | 738 |
| PpuMI | RGGWCCY | 2 cut(s) | 226, 707 |
| Psp5II | RGGWCCY | 2 cut(s) | 226, 707 |
| Psp6I | CCWGG | 1 cut(s) | 759 |
| PspGI | CCWGG | 1 cut(s) | 759 |
| PspN4I | GGNNCC | 6 cut(s) | 7, 543, 708, 891, 909, 927 |
| PspPI | GGNCC | 4 cut(s) | 226, 541, 707, 907 |
| PspPPI | RGGWCCY | 2 cut(s) | 226, 707 |
| PstI | CTGCAG | 1 cut(s) | 225 |
| PsuI | RGATCY | 2 cut(s) | 630, 797 |
| RseI | CAYNNNNRTG | 2 cut(s) | 51, 624 |
| SaqAI | TTAA | 2 cut(s) | 273, 441 |
| SatI | GCNGC | 5 cut(s) | 99, 159, 197, 420, 947 |
| Sau3AI | GATC | 8 cut(s) | 133, 143, 170, 630, 699, 777, 797, 863 |
| Sau96I | GGNCC | 4 cut(s) | 226, 541, 707, 907 |
| SchI | GAGTC | 1 cut(s) | 739 |
| ScrFI | CCNGG | 4 cut(s) | 545, 546, 761, 992 |
| SduI | GDGCHC | 1 cut(s) | 928 |
| SfaNI | GCATC | 4 cut(s) | 110, 334, 774, 1012 |
| SfcI | CTRYAG | 1 cut(s) | 221 |
| SinI | GGWCC | 3 cut(s) | 226, 707, 907 |
| SmaI | CCCGGG | 1 cut(s) | 546 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 51, 624 |
| SmlI | CTYRAG | 1 cut(s) | 977 |
| SmoI | CTYRAG | 1 cut(s) | 977 |
| Sse9I | AATT | 2 cut(s) | 443, 607 |
| SsiI | CCGC | 5 cut(s) | 98, 147, 197, 323, 1019 |
| SspI | AATATT | 1 cut(s) | 478 |
| SspMI | CTAG | 3 cut(s) | 714, 1062, 1068 |
| StyD4I | CCNGG | 4 cut(s) | 543, 544, 759, 990 |
| StyI | CCWWGG | 2 cut(s) | 72, 339 |
| TaiI | ACGT | 2 cut(s) | 166, 238 |
| TaqI | TCGA | 5 cut(s) | 142, 166, 232, 776, 1041 |
| TasI | AATT | 2 cut(s) | 443, 607 |
| TauI | GCSGC | 2 cut(s) | 101, 199 |
| TfiI | GAWTC | 1 cut(s) | 676 |
| Tru1I | TTAA | 2 cut(s) | 273, 441 |
| Tru9I | TTAA | 2 cut(s) | 273, 441 |
| TscAI | CASTG | 1 cut(s) | 225 |
| TseFI | GTSAC | 1 cut(s) | 82 |
| TseI | GCWGC | 3 cut(s) | 158, 419, 946 |
| Tsp45I | GTSAC | 1 cut(s) | 82 |
| TspDTI | ATGAA | 3 cut(s) | 636, 647, 689 |
| TspGWI | ACGGA | 1 cut(s) | 723 |
| TspMI | CCCGGG | 1 cut(s) | 544 |
| TspRI | CASTG | 1 cut(s) | 225 |
| VpaK11BI | GGWCC | 3 cut(s) | 226, 707, 907 |
| XceI | RCATGY | 1 cut(s) | 500 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 412, 901 |
| XmaI | CCCGGG | 1 cut(s) | 544 |
| XspI | CTAG | 3 cut(s) | 714, 1062, 1068 |